diff options
| -rwxr-xr-x | R Scripts/analyze-cascades.R | 1 | ||||
| -rw-r--r-- | R Scripts/fit-background.R | 6 | ||||
| -rw-r--r-- | supplements/.texpadtmp/main.aux | 6 | ||||
| -rw-r--r-- | supplements/.texpadtmp/main.log | 28 | ||||
| -rw-r--r-- | supplements/.texpadtmp/main.synctex.gz | bin | 39580 -> 37982 bytes | |||
| -rw-r--r-- | supplements/background-rate.pdf | bin | 0 -> 145819 bytes | |||
| -rw-r--r-- | supplements/cascade-distribution.pdf | bin | 8587 -> 7915 bytes | |||
| -rw-r--r-- | supplements/main.tex | 2 |
8 files changed, 22 insertions, 21 deletions
diff --git a/R Scripts/analyze-cascades.R b/R Scripts/analyze-cascades.R index 04cb0e3..9a47ece 100755 --- a/R Scripts/analyze-cascades.R +++ b/R Scripts/analyze-cascades.R @@ -13,7 +13,6 @@ counts[data$V1] = data$V2 pl = power.law.fit(counts) plot(sizes,counts,log='xy',pch=20,col='#377EB8', xlab='Size of Cascade', ylab='Number of Cascades', main='') -lines(c(1,1)) sizes_pl = displ$new(counts[counts>1]) est = estimate_xmin(sizes_pl) diff --git a/R Scripts/fit-background.R b/R Scripts/fit-background.R index 73ab6b2..506f6e3 100644 --- a/R Scripts/fit-background.R +++ b/R Scripts/fit-background.R @@ -1,6 +1,6 @@ library(igraph) setwd("~/Documents/Violence Cascades/") -load('Results/hyper-lcc.RData') +load('Raw Data/hyper-lcc.RData') # load data hyp_lcc = upgrade_graph(hyp_lcc) @@ -28,5 +28,7 @@ res = nls(formula=fit_form, data=infs, start=list(lambda=3, A=2, phi=4)) co = coef(res); co plot(t) -plot(days,counts,pch=20,cex=0.4,xlab='Day',ylab='Number of Infections') +plot(days,counts,pch=20,cex=0.9,col='#377EB8', + xlab='Day',ylab='Number of Infections') curve(fit(x, lambda=co["lambda"], A=co["A"], phi=co["phi"]), add=TRUE ,lwd=5, col="steelblue") + diff --git a/supplements/.texpadtmp/main.aux b/supplements/.texpadtmp/main.aux index 7a2a06b..8bdbef2 100644 --- a/supplements/.texpadtmp/main.aux +++ b/supplements/.texpadtmp/main.aux @@ -12,12 +12,12 @@ \newlabel{fig:hawkes-diagram}{{1}{3}} \@writefile{toc}{\contentsline {subsection}{\numberline {1.3}Likelihood}{3}} \newlabel{eq:final-likelihood}{{3}{3}} -\@writefile{lof}{\contentsline {figure}{\numberline {2}{\ignorespaces The background rate $M(t)$ learned to describe the data. Each dot represents the number of infections (fatal and nonfatal) that occurred on a given day.}}{4}} +\@writefile{lof}{\contentsline {figure}{\numberline {2}{\ignorespaces Aggregated number of infections. Each blue dot represents the number of infections (fatal and nonfatal) that occurred on a given day. The green curve is the sinusoidal function fit to the data.}}{4}} \newlabel{fig:background}{{2}{4}} \@writefile{toc}{\contentsline {section}{\numberline {2}Model Inference}{4}} -\@writefile{toc}{\contentsline {subsection}{\numberline {2.1}Background rate}{4}} +\@writefile{toc}{\contentsline {subsection}{\numberline {2.1}Exogenous Intensity}{4}} \newlabel{sec:background}{{2.1}{4}} -\@writefile{toc}{\contentsline {subsection}{\numberline {2.2}Kernel function parameters}{5}} +\@writefile{toc}{\contentsline {subsection}{\numberline {2.2}Kernel Function Parameters}{5}} \@writefile{toc}{\contentsline {section}{\numberline {3}Inferring infections}{5}} \@writefile{toc}{\contentsline {subsection}{\numberline {3.1}Experiments with synthetic data}{5}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {3.1.1}Generating networks}{5}} diff --git a/supplements/.texpadtmp/main.log b/supplements/.texpadtmp/main.log index 9eb6ad6..9dc5482 100644 --- a/supplements/.texpadtmp/main.log +++ b/supplements/.texpadtmp/main.log @@ -1,4 +1,4 @@ -This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdflatex 2014.5.25) 17 SEP 2015 23:42 +This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdflatex 2014.5.25) 18 SEP 2015 23:48 entering extended mode restricted \write18 enabled. file:line:error style messages enabled. @@ -271,22 +271,22 @@ Package pdftex.def Info: hawkes-diagram.png used on input line 164. [3 <./hawkes-diagram.png>] <background.pdf, id=29, 494.28726pt x 223.93506pt> File: background.pdf Graphic file (type pdf) <use background.pdf> -Package pdftex.def Info: background.pdf used on input line 188. +Package pdftex.def Info: background.pdf used on input line 195. (pdftex.def) Requested size: 345.0pt x 156.30241pt. [4 <./background.pdf>] -Overfull \hbox (40.4303pt too wide) detected at line 230 +Overfull \hbox (40.4303pt too wide) detected at line 232 \OML/cmm/m/it/10 ^^U[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 t\OT1/cmr/m/n/10 ) = 1\OML/cmm/m/it/10 :\OT1/cmr/m/n/10 1845 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[] [] + [] []0\OML/cmm/m/it/10 :\OT1/cmr/m/n/10 0039\OML/cmm/m/it/10 e[] [] -<cascade-distribution.pdf, id=65, 794.97pt x 614.295pt> +<cascade-distribution.pdf, id=65, 433.62pt x 289.08pt> File: cascade-distribution.pdf Graphic file (type pdf) <use cascade-distribution.pdf> -Package pdftex.def Info: cascade-distribution.pdf used on input line 241. -(pdftex.def) Requested size: 207.0021pt x 159.95663pt. +Package pdftex.def Info: cascade-distribution.pdf used on input line 243. +(pdftex.def) Requested size: 276.00105pt x 184.00926pt. (/usr/local/texlive/2014/texmf-dist/tex/latex/ucs/data/uni-32.def File: uni-32.def 2013/05/13 UCS: Unicode data U+2000..U+20FF ) [5] -Overfull \hbox (5.30283pt too wide) in paragraph at lines 259--259 +Overfull \hbox (5.30283pt too wide) in paragraph at lines 261--261 []\OT1/cmr/bx/n/14.4 Regarding causal-ity [THIBAUT WRITE THIS [] @@ -297,17 +297,17 @@ LaTeX Warning: There were multiply-defined labels. ) Here is how much of TeX's memory you used: 5329 strings out of 493117 - 78456 string characters out of 6135433 - 181083 words of memory out of 5000000 + 78464 string characters out of 6135433 + 180083 words of memory out of 5000000 8651 multiletter control sequences out of 15000+600000 - 11217 words of font info for 67 fonts, out of 8000000 for 9000 + 11274 words of font info for 67 fonts, out of 8000000 for 9000 1141 hyphenation exceptions out of 8191 38i,16n,35p,664b,545s stack positions out of 5000i,500n,10000p,200000b,80000s -</usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx10.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmex10.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi5.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmr17.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb> -Output written on "/Users/ben/Documents/Violence Cascades/criminal_cascades/supplements/.texpadtmp/main.pdf" (6 pages, 302114 bytes). +</usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx10.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmex10.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi5.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi8.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmr17.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmr6.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb></usr/local/texlive/2014/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb> +Output written on "/Users/ben/Documents/Violence Cascades/criminal_cascades/supplements/.texpadtmp/main.pdf" (6 pages, 327734 bytes). PDF statistics: - 122 PDF objects out of 1000 (max. 8388607) - 68 compressed objects within 1 object stream + 133 PDF objects out of 1000 (max. 8388607) + 76 compressed objects within 1 object stream 0 named destinations out of 1000 (max. 500000) 12304 words of extra memory for PDF output out of 14400 (max. 10000000) diff --git a/supplements/.texpadtmp/main.synctex.gz b/supplements/.texpadtmp/main.synctex.gz Binary files differindex 09335fa..c44c65b 100644 --- a/supplements/.texpadtmp/main.synctex.gz +++ b/supplements/.texpadtmp/main.synctex.gz diff --git a/supplements/background-rate.pdf b/supplements/background-rate.pdf Binary files differnew file mode 100644 index 0000000..97223da --- /dev/null +++ b/supplements/background-rate.pdf diff --git a/supplements/cascade-distribution.pdf b/supplements/cascade-distribution.pdf Binary files differindex 2dc89fc..51a6ea4 100644 --- a/supplements/cascade-distribution.pdf +++ b/supplements/cascade-distribution.pdf diff --git a/supplements/main.tex b/supplements/main.tex index b6cc505..04a306d 100644 --- a/supplements/main.tex +++ b/supplements/main.tex @@ -240,7 +240,7 @@ We take this approach one step further to determine the person most responsible \begin{figure} \centering -\includegraphics[width=.6\textwidth]{cascade-distribution} +\includegraphics[width=.8\textwidth]{cascade-distribution} \caption{The distribution of cascade sizes follows a power-law distribution.} \label{fig:cascade-sizes} \end{figure} |