diff options
Diffstat (limited to 'experiments/ml.c')
| -rw-r--r-- | experiments/ml.c | 449 |
1 files changed, 141 insertions, 308 deletions
diff --git a/experiments/ml.c b/experiments/ml.c index 4c3f024..b350aaf 100644 --- a/experiments/ml.c +++ b/experiments/ml.c @@ -871,13 +871,6 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject static PyObject *__Pyx_GetBuiltinName(PyObject *name); -static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb); -static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb); - -static void __Pyx_WriteUnraisable(const char *name, int clineno, - int lineno, const char *filename, - int full_traceback); - static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact, Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); @@ -992,6 +985,9 @@ static double __Pyx__PyObject_AsDouble(PyObject* obj); static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname); +static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb); +static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb); + static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); #if PY_MAJOR_VERSION >= 3 @@ -1060,14 +1056,6 @@ static Py_ssize_t __Pyx_minusones[] = {-1, -1, -1, -1, -1, -1, -1, -1}; static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); -static int __Pyx_Print(PyObject*, PyObject *, int); -#if CYTHON_COMPILING_IN_PYPY || PY_MAJOR_VERSION >= 3 -static PyObject* __pyx_print = 0; -static PyObject* __pyx_print_kwargs = 0; -#endif - -static int __Pyx_PrintOne(PyObject* stream, PyObject *o); - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value); static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); @@ -1303,14 +1291,12 @@ static char __pyx_k_w1[] = "w1"; static char __pyx_k_w2[] = "w2"; static char __pyx_k_w3[] = "w3"; static char __pyx_k_age[] = "age"; -static char __pyx_k_end[] = "end"; static char __pyx_k_inf[] = "-inf"; static char __pyx_k_max[] = "max"; static char __pyx_k_sum[] = "sum"; static char __pyx_k_args[] = "args"; static char __pyx_k_beta[] = "beta"; static char __pyx_k_dist[] = "dist"; -static char __pyx_k_file[] = "file"; static char __pyx_k_main[] = "__main__"; static char __pyx_k_send[] = "send"; static char __pyx_k_test[] = "__test__"; @@ -1320,12 +1306,12 @@ static char __pyx_k_close[] = "close"; static char __pyx_k_delta[] = "delta"; static char __pyx_k_dtype[] = "dtype"; static char __pyx_k_numpy[] = "numpy"; -static char __pyx_k_print[] = "print"; static char __pyx_k_probs[] = "probs"; static char __pyx_k_range[] = "range"; static char __pyx_k_roots[] = "roots"; static char __pyx_k_throw[] = "throw"; static char __pyx_k_zeros[] = "zeros"; +static char __pyx_k_arange[] = "arange"; static char __pyx_k_import[] = "__import__"; static char __pyx_k_thresh[] = "thresh"; static char __pyx_k_float64[] = "float64"; @@ -1349,7 +1335,6 @@ static char __pyx_k_non_victims[] = "non_victims"; static char __pyx_k_RuntimeError[] = "RuntimeError"; static char __pyx_k_max_beta_add[] = "max_beta_add"; static char __pyx_k_root_victims[] = "root_victims"; -static char __pyx_k_UNDERFLOW_ERROR[] = "UNDERFLOW ERROR"; static char __pyx_k_ml_locals_genexpr[] = "ml.<locals>.genexpr"; static char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous"; static char __pyx_k_Users_ben_Documents_Cascade_Pro[] = "/Users/ben/Documents/Cascade Project/criminal_cascades/experiments/ml.pyx"; @@ -1363,11 +1348,11 @@ static PyObject *__pyx_kp_u_Format_string_allocated_too_shor; static PyObject *__pyx_kp_u_Format_string_allocated_too_shor_2; static PyObject *__pyx_kp_u_Non_native_byte_order_not_suppor; static PyObject *__pyx_n_s_RuntimeError; -static PyObject *__pyx_kp_s_UNDERFLOW_ERROR; static PyObject *__pyx_kp_s_Users_ben_Documents_Cascade_Pro; static PyObject *__pyx_n_s_ValueError; static PyObject *__pyx_n_s_age; static PyObject *__pyx_n_s_alpha; +static PyObject *__pyx_n_s_arange; static PyObject *__pyx_n_s_args; static PyObject *__pyx_n_s_beta; static PyObject *__pyx_n_s_beta_add; @@ -1376,10 +1361,8 @@ static PyObject *__pyx_n_s_delta; static PyObject *__pyx_n_s_dist; static PyObject *__pyx_n_s_dt; static PyObject *__pyx_n_s_dtype; -static PyObject *__pyx_n_s_end; static PyObject *__pyx_n_s_enumerate; static PyObject *__pyx_n_s_failures; -static PyObject *__pyx_n_s_file; static PyObject *__pyx_n_s_float64; static PyObject *__pyx_n_s_genexpr; static PyObject *__pyx_n_s_i; @@ -1404,7 +1387,6 @@ static PyObject *__pyx_n_s_non_victims; static PyObject *__pyx_n_s_np; static PyObject *__pyx_n_s_numpy; static PyObject *__pyx_n_s_parents; -static PyObject *__pyx_n_s_print; static PyObject *__pyx_n_s_probs; static PyObject *__pyx_n_s_probs_fail; static PyObject *__pyx_n_s_probs_nv; @@ -1424,7 +1406,9 @@ static PyObject *__pyx_n_s_w1; static PyObject *__pyx_n_s_w2; static PyObject *__pyx_n_s_w3; static PyObject *__pyx_n_s_zeros; -static PyObject *__pyx_float_0_13; +static PyObject *__pyx_float__2; +static PyObject *__pyx_float__002; +static PyObject *__pyx_float_0_001; static PyObject *__pyx_tuple_; static PyObject *__pyx_tuple__2; static PyObject *__pyx_tuple__3; @@ -1486,10 +1470,6 @@ static __pyx_t_2ml_DTYPE_t __pyx_f_2ml_weight_success(int __pyx_v_dist, int __py __pyx_t_2ml_DTYPE_t __pyx_v_result; __pyx_t_2ml_DTYPE_t __pyx_r; __Pyx_RefNannyDeclarations - int __pyx_t_1; - int __pyx_lineno = 0; - const char *__pyx_filename = NULL; - int __pyx_clineno = 0; __Pyx_RefNannySetupContext("weight_success", 0); /* "ml.pyx":16 @@ -1506,26 +1486,12 @@ static __pyx_t_2ml_DTYPE_t __pyx_f_2ml_weight_success(int __pyx_v_dist, int __py * # structural = plogis(w1,delta) * plogis(w2,delta) * plogis(w3,delta) * temporal = exp(-alpha*dt) * (exp(alpha)-1.) # <<<<<<<<<<<<<< * # temporal = 1 - exp(-alpha*dt) - * if exp(-alpha*dt)==0.: print 'UNDERFLOW ERROR' + * # if exp(-alpha*dt)==0.: print 'UNDERFLOW ERROR' */ __pyx_v_temporal = (exp(((-__pyx_v_alpha) * __pyx_v_dt)) * (exp(__pyx_v_alpha) - 1.)); - /* "ml.pyx":20 - * temporal = exp(-alpha*dt) * (exp(alpha)-1.) - * # temporal = 1 - exp(-alpha*dt) - * if exp(-alpha*dt)==0.: print 'UNDERFLOW ERROR' # <<<<<<<<<<<<<< - * # temporal = 1. / (1. + (dt - 1.)/alpha)**0.01 - 1. / (1. + dt/alpha)**0.01 - * result = log(structural * temporal) - */ - __pyx_t_1 = ((exp(((-__pyx_v_alpha) * __pyx_v_dt)) == 0.) != 0); - if (__pyx_t_1) { - if (__Pyx_PrintOne(0, __pyx_kp_s_UNDERFLOW_ERROR) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 20; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - goto __pyx_L3; - } - __pyx_L3:; - /* "ml.pyx":22 - * if exp(-alpha*dt)==0.: print 'UNDERFLOW ERROR' + * # if exp(-alpha*dt)==0.: print 'UNDERFLOW ERROR' * # temporal = 1. / (1. + (dt - 1.)/alpha)**0.01 - 1. / (1. + dt/alpha)**0.01 * result = log(structural * temporal) # <<<<<<<<<<<<<< * # print 'st', structural, temporal @@ -1552,9 +1518,6 @@ static __pyx_t_2ml_DTYPE_t __pyx_f_2ml_weight_success(int __pyx_v_dist, int __py */ /* function exit code */ - __pyx_L1_error:; - __Pyx_WriteUnraisable("ml.weight_success", __pyx_clineno, __pyx_lineno, __pyx_filename, 0); - __pyx_r = 0; __pyx_L0:; __Pyx_RefNannyFinishContext(); return __pyx_r; @@ -1935,7 +1898,8 @@ static PyObject *__pyx_pf_2ml_ml(CYTHON_UNUSED PyObject *__pyx_self, PyObject *_ int __pyx_t_25; int __pyx_t_26; double __pyx_t_27; - int __pyx_t_28; + PyObject *(*__pyx_t_28)(PyObject *); + int __pyx_t_29; int __pyx_lineno = 0; const char *__pyx_filename = NULL; int __pyx_clineno = 0; @@ -1963,7 +1927,7 @@ static PyObject *__pyx_pf_2ml_ml(CYTHON_UNUSED PyObject *__pyx_self, PyObject *_ * DTYPE_t beta, ll * list parents, failures, successes * n_roots, n_victims = len(root_victims), len(victims) # <<<<<<<<<<<<<< - * n_nodes = 100 + * n_nodes = 148152 * cdef: */ if (unlikely(__pyx_v_root_victims == Py_None)) { @@ -1982,14 +1946,14 @@ static PyObject *__pyx_pf_2ml_ml(CYTHON_UNUSED PyObject *__pyx_self, PyObject *_ /* "ml.pyx":45 * list parents, failures, successes * n_roots, n_victims = len(root_victims), len(victims) - * n_nodes = 100 # <<<<<<<<<<<<<< + * n_nodes = 148152 # <<<<<<<<<<<<<< * cdef: * np.ndarray[DTYPE_t] probs = np.zeros(n_victims, dtype=DTYPE) */ - __pyx_v_n_nodes = 100; + __pyx_v_n_nodes = 148152; /* "ml.pyx":47 - * n_nodes = 100 + * n_nodes = 148152 * cdef: * np.ndarray[DTYPE_t] probs = np.zeros(n_victims, dtype=DTYPE) # <<<<<<<<<<<<<< * np.ndarray[DTYPE_t] probs_fail = np.zeros(n_victims, dtype=DTYPE) @@ -2736,7 +2700,7 @@ static PyObject *__pyx_pf_2ml_ml(CYTHON_UNUSED PyObject *__pyx_self, PyObject *_ * # print 'probs', probs * max_beta_add = float('-inf') # <<<<<<<<<<<<<< * # iterate over all victim nodes to find the optimal threshold - * for beta in [0.13]:#np.arange(0.001, .2, .002): + * for beta in np.arange(0.001, .2, .002): */ __pyx_t_27 = __Pyx_PyObject_AsDouble(__pyx_kp_s_inf); if (unlikely(__pyx_t_27 == ((double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 84; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __pyx_t_5 = PyFloat_FromDouble(__pyx_t_27); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 84; __pyx_clineno = __LINE__; goto __pyx_L1_error;} @@ -2747,47 +2711,85 @@ static PyObject *__pyx_pf_2ml_ml(CYTHON_UNUSED PyObject *__pyx_self, PyObject *_ /* "ml.pyx":86 * max_beta_add = float('-inf') * # iterate over all victim nodes to find the optimal threshold - * for beta in [0.13]:#np.arange(0.001, .2, .002): # <<<<<<<<<<<<<< - * thresh = log(beta/(1.-beta)) + * for beta in np.arange(0.001, .2, .002): # <<<<<<<<<<<<<< + * thresh = log(beta/(3012*(1.-beta))) * # print 'beta:', beta, 'thresh:', thresh, 'infected:', len(probs[probs>=thresh]) */ - __pyx_t_5 = __pyx_tuple_; __Pyx_INCREF(__pyx_t_5); __pyx_t_2 = 0; + __pyx_t_5 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 86; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_5); + __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_n_s_arange); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 86; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; + __pyx_t_5 = __Pyx_PyObject_Call(__pyx_t_4, __pyx_tuple_, NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 86; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_5); + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + if (likely(PyList_CheckExact(__pyx_t_5)) || PyTuple_CheckExact(__pyx_t_5)) { + __pyx_t_4 = __pyx_t_5; __Pyx_INCREF(__pyx_t_4); __pyx_t_2 = 0; + __pyx_t_28 = NULL; + } else { + __pyx_t_2 = -1; __pyx_t_4 = PyObject_GetIter(__pyx_t_5); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 86; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __pyx_t_28 = Py_TYPE(__pyx_t_4)->tp_iternext; if (unlikely(!__pyx_t_28)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 86; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; for (;;) { - if (__pyx_t_2 >= 1) break; - #if CYTHON_COMPILING_IN_CPYTHON - __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_5, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 86; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #else - __pyx_t_4 = PySequence_ITEM(__pyx_t_5, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 86; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #endif - __pyx_t_24 = __pyx_PyFloat_AsDouble(__pyx_t_4); if (unlikely((__pyx_t_24 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 86; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + if (likely(!__pyx_t_28)) { + if (likely(PyList_CheckExact(__pyx_t_4))) { + if (__pyx_t_2 >= PyList_GET_SIZE(__pyx_t_4)) break; + #if CYTHON_COMPILING_IN_CPYTHON + __pyx_t_5 = PyList_GET_ITEM(__pyx_t_4, __pyx_t_2); __Pyx_INCREF(__pyx_t_5); __pyx_t_2++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 86; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #else + __pyx_t_5 = PySequence_ITEM(__pyx_t_4, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 86; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #endif + } else { + if (__pyx_t_2 >= PyTuple_GET_SIZE(__pyx_t_4)) break; + #if CYTHON_COMPILING_IN_CPYTHON + __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_2); __Pyx_INCREF(__pyx_t_5); __pyx_t_2++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 86; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #else + __pyx_t_5 = PySequence_ITEM(__pyx_t_4, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 86; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #endif + } + } else { + __pyx_t_5 = __pyx_t_28(__pyx_t_4); + if (unlikely(!__pyx_t_5)) { + PyObject* exc_type = PyErr_Occurred(); + if (exc_type) { + if (likely(exc_type == PyExc_StopIteration || PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear(); + else {__pyx_filename = __pyx_f[0]; __pyx_lineno = 86; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + break; + } + __Pyx_GOTREF(__pyx_t_5); + } + __pyx_t_24 = __pyx_PyFloat_AsDouble(__pyx_t_5); if (unlikely((__pyx_t_24 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 86; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; __pyx_v_beta = __pyx_t_24; /* "ml.pyx":87 * # iterate over all victim nodes to find the optimal threshold - * for beta in [0.13]:#np.arange(0.001, .2, .002): - * thresh = log(beta/(1.-beta)) # <<<<<<<<<<<<<< + * for beta in np.arange(0.001, .2, .002): + * thresh = log(beta/(3012*(1.-beta))) # <<<<<<<<<<<<<< * # print 'beta:', beta, 'thresh:', thresh, 'infected:', len(probs[probs>=thresh]) * roots = n_roots + len(probs[probs<thresh]) */ - __pyx_v_thresh = log((__pyx_v_beta / (1. - __pyx_v_beta))); + __pyx_v_thresh = log((__pyx_v_beta / (3012.0 * (1. - __pyx_v_beta)))); /* "ml.pyx":89 - * thresh = log(beta/(1.-beta)) + * thresh = log(beta/(3012*(1.-beta))) * # print 'beta:', beta, 'thresh:', thresh, 'infected:', len(probs[probs>=thresh]) * roots = n_roots + len(probs[probs<thresh]) # <<<<<<<<<<<<<< * * # add probability for realized edges and subtract probability these edges fail */ - __pyx_t_4 = PyFloat_FromDouble(__pyx_v_thresh); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 89; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __pyx_t_3 = PyObject_RichCompare(((PyObject *)__pyx_v_probs), __pyx_t_4, Py_LT); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 89; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __pyx_t_4 = PyObject_GetItem(((PyObject *)__pyx_v_probs), __pyx_t_3); if (unlikely(__pyx_t_4 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 89; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; - __Pyx_GOTREF(__pyx_t_4); + __pyx_t_5 = PyFloat_FromDouble(__pyx_v_thresh); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 89; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_5); + __pyx_t_3 = PyObject_RichCompare(((PyObject *)__pyx_v_probs), __pyx_t_5, Py_LT); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 89; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; + __pyx_t_5 = PyObject_GetItem(((PyObject *)__pyx_v_probs), __pyx_t_3); if (unlikely(__pyx_t_5 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 89; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; + __Pyx_GOTREF(__pyx_t_5); __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_1 = PyObject_Length(__pyx_t_4); if (unlikely(__pyx_t_1 == -1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 89; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __pyx_t_1 = PyObject_Length(__pyx_t_5); if (unlikely(__pyx_t_1 == -1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 89; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; __pyx_v_roots = (__pyx_v_n_roots + __pyx_t_1); /* "ml.pyx":92 @@ -2818,15 +2820,15 @@ static PyObject *__pyx_pf_2ml_ml(CYTHON_UNUSED PyObject *__pyx_self, PyObject *_ } } if (__pyx_t_3) { - __pyx_t_4 = __Pyx_PyObject_CallOneArg(__pyx_t_6, __pyx_t_3); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 92; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_5 = __Pyx_PyObject_CallOneArg(__pyx_t_6, __pyx_t_3); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 92; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; } else { - __pyx_t_4 = __Pyx_PyObject_CallNoArg(__pyx_t_6); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 92; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_5 = __Pyx_PyObject_CallNoArg(__pyx_t_6); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 92; __pyx_clineno = __LINE__; goto __pyx_L1_error;} } - __Pyx_GOTREF(__pyx_t_4); + __Pyx_GOTREF(__pyx_t_5); __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; - __Pyx_XDECREF_SET(__pyx_v_beta_add, __pyx_t_4); - __pyx_t_4 = 0; + __Pyx_XDECREF_SET(__pyx_v_beta_add, __pyx_t_5); + __pyx_t_5 = 0; /* "ml.pyx":94 * beta_add = (probs[probs>=thresh]).sum() @@ -2835,11 +2837,11 @@ static PyObject *__pyx_pf_2ml_ml(CYTHON_UNUSED PyObject *__pyx_self, PyObject *_ * * if beta_add > max_beta_add: */ - __pyx_t_4 = PyFloat_FromDouble(((__pyx_v_roots * log(__pyx_v_beta)) + ((__pyx_v_n_nodes - __pyx_v_roots) * log((1. - __pyx_v_beta))))); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 94; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __pyx_t_6 = PyNumber_InPlaceAdd(__pyx_v_beta_add, __pyx_t_4); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 94; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_5 = PyFloat_FromDouble(((__pyx_v_roots * log(__pyx_v_beta)) + ((__pyx_v_n_nodes - __pyx_v_roots) * log((1. - __pyx_v_beta))))); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 94; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_5); + __pyx_t_6 = PyNumber_InPlaceAdd(__pyx_v_beta_add, __pyx_t_5); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 94; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_GOTREF(__pyx_t_6); - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; __Pyx_DECREF_SET(__pyx_v_beta_add, __pyx_t_6); __pyx_t_6 = 0; @@ -2851,9 +2853,9 @@ static PyObject *__pyx_pf_2ml_ml(CYTHON_UNUSED PyObject *__pyx_self, PyObject *_ * max_roots = roots */ __pyx_t_6 = PyObject_RichCompare(__pyx_v_beta_add, __pyx_v_max_beta_add, Py_GT); __Pyx_XGOTREF(__pyx_t_6); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 96; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_t_28 = __Pyx_PyObject_IsTrue(__pyx_t_6); if (unlikely(__pyx_t_28 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 96; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_29 = __Pyx_PyObject_IsTrue(__pyx_t_6); if (unlikely(__pyx_t_29 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 96; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; - if (__pyx_t_28) { + if (__pyx_t_29) { /* "ml.pyx":97 * @@ -2892,12 +2894,12 @@ static PyObject *__pyx_pf_2ml_ml(CYTHON_UNUSED PyObject *__pyx_self, PyObject *_ /* "ml.pyx":86 * max_beta_add = float('-inf') * # iterate over all victim nodes to find the optimal threshold - * for beta in [0.13]:#np.arange(0.001, .2, .002): # <<<<<<<<<<<<<< - * thresh = log(beta/(1.-beta)) + * for beta in np.arange(0.001, .2, .002): # <<<<<<<<<<<<<< + * thresh = log(beta/(3012*(1.-beta))) * # print 'beta:', beta, 'thresh:', thresh, 'infected:', len(probs[probs>=thresh]) */ } - __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; /* "ml.pyx":102 * # print 'beta:', max_beta, 'add:', max_beta_add, 'roots:', max_roots @@ -2906,11 +2908,11 @@ static PyObject *__pyx_pf_2ml_ml(CYTHON_UNUSED PyObject *__pyx_self, PyObject *_ * roots = max_roots * beta = max_beta */ - __pyx_t_5 = PyFloat_FromDouble(__pyx_v_ll); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 102; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_5); - __pyx_t_6 = PyNumber_InPlaceAdd(__pyx_t_5, __pyx_v_max_beta_add); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 102; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_4 = PyFloat_FromDouble(__pyx_v_ll); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 102; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __pyx_t_6 = PyNumber_InPlaceAdd(__pyx_t_4, __pyx_v_max_beta_add); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 102; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_GOTREF(__pyx_t_6); - __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; __pyx_t_24 = __pyx_PyFloat_AsDouble(__pyx_t_6); if (unlikely((__pyx_t_24 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 102; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; __pyx_v_ll = __pyx_t_24; @@ -2943,21 +2945,21 @@ static PyObject *__pyx_pf_2ml_ml(CYTHON_UNUSED PyObject *__pyx_self, PyObject *_ __Pyx_XDECREF(__pyx_r); __pyx_t_6 = PyFloat_FromDouble(__pyx_v_beta); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 106; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_GOTREF(__pyx_t_6); - __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_roots); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 106; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_5); - __pyx_t_4 = PyFloat_FromDouble(__pyx_v_ll); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 106; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_4 = __Pyx_PyInt_From_int(__pyx_v_roots); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 106; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_GOTREF(__pyx_t_4); + __pyx_t_5 = PyFloat_FromDouble(__pyx_v_ll); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 106; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_5); __pyx_t_3 = PyTuple_New(3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 106; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_GOTREF(__pyx_t_3); PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_6); __Pyx_GIVEREF(__pyx_t_6); - PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_t_5); - __Pyx_GIVEREF(__pyx_t_5); - PyTuple_SET_ITEM(__pyx_t_3, 2, __pyx_t_4); + PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_t_4); __Pyx_GIVEREF(__pyx_t_4); + PyTuple_SET_ITEM(__pyx_t_3, 2, __pyx_t_5); + __Pyx_GIVEREF(__pyx_t_5); __pyx_t_6 = 0; - __pyx_t_5 = 0; __pyx_t_4 = 0; + __pyx_t_5 = 0; __pyx_r = __pyx_t_3; __pyx_t_3 = 0; goto __pyx_L0; @@ -5269,11 +5271,11 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_kp_u_Format_string_allocated_too_shor_2, __pyx_k_Format_string_allocated_too_shor_2, sizeof(__pyx_k_Format_string_allocated_too_shor_2), 0, 1, 0, 0}, {&__pyx_kp_u_Non_native_byte_order_not_suppor, __pyx_k_Non_native_byte_order_not_suppor, sizeof(__pyx_k_Non_native_byte_order_not_suppor), 0, 1, 0, 0}, {&__pyx_n_s_RuntimeError, __pyx_k_RuntimeError, sizeof(__pyx_k_RuntimeError), 0, 0, 1, 1}, - {&__pyx_kp_s_UNDERFLOW_ERROR, __pyx_k_UNDERFLOW_ERROR, sizeof(__pyx_k_UNDERFLOW_ERROR), 0, 0, 1, 0}, {&__pyx_kp_s_Users_ben_Documents_Cascade_Pro, __pyx_k_Users_ben_Documents_Cascade_Pro, sizeof(__pyx_k_Users_ben_Documents_Cascade_Pro), 0, 0, 1, 0}, {&__pyx_n_s_ValueError, __pyx_k_ValueError, sizeof(__pyx_k_ValueError), 0, 0, 1, 1}, {&__pyx_n_s_age, __pyx_k_age, sizeof(__pyx_k_age), 0, 0, 1, 1}, {&__pyx_n_s_alpha, __pyx_k_alpha, sizeof(__pyx_k_alpha), 0, 0, 1, 1}, + {&__pyx_n_s_arange, __pyx_k_arange, sizeof(__pyx_k_arange), 0, 0, 1, 1}, {&__pyx_n_s_args, __pyx_k_args, sizeof(__pyx_k_args), 0, 0, 1, 1}, {&__pyx_n_s_beta, __pyx_k_beta, sizeof(__pyx_k_beta), 0, 0, 1, 1}, {&__pyx_n_s_beta_add, __pyx_k_beta_add, sizeof(__pyx_k_beta_add), 0, 0, 1, 1}, @@ -5282,10 +5284,8 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_dist, __pyx_k_dist, sizeof(__pyx_k_dist), 0, 0, 1, 1}, {&__pyx_n_s_dt, __pyx_k_dt, sizeof(__pyx_k_dt), 0, 0, 1, 1}, {&__pyx_n_s_dtype, __pyx_k_dtype, sizeof(__pyx_k_dtype), 0, 0, 1, 1}, - {&__pyx_n_s_end, __pyx_k_end, sizeof(__pyx_k_end), 0, 0, 1, 1}, {&__pyx_n_s_enumerate, __pyx_k_enumerate, sizeof(__pyx_k_enumerate), 0, 0, 1, 1}, {&__pyx_n_s_failures, __pyx_k_failures, sizeof(__pyx_k_failures), 0, 0, 1, 1}, - {&__pyx_n_s_file, __pyx_k_file, sizeof(__pyx_k_file), 0, 0, 1, 1}, {&__pyx_n_s_float64, __pyx_k_float64, sizeof(__pyx_k_float64), 0, 0, 1, 1}, {&__pyx_n_s_genexpr, __pyx_k_genexpr, sizeof(__pyx_k_genexpr), 0, 0, 1, 1}, {&__pyx_n_s_i, __pyx_k_i, sizeof(__pyx_k_i), 0, 0, 1, 1}, @@ -5310,7 +5310,6 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_np, __pyx_k_np, sizeof(__pyx_k_np), 0, 0, 1, 1}, {&__pyx_n_s_numpy, __pyx_k_numpy, sizeof(__pyx_k_numpy), 0, 0, 1, 1}, {&__pyx_n_s_parents, __pyx_k_parents, sizeof(__pyx_k_parents), 0, 0, 1, 1}, - {&__pyx_n_s_print, __pyx_k_print, sizeof(__pyx_k_print), 0, 0, 1, 1}, {&__pyx_n_s_probs, __pyx_k_probs, sizeof(__pyx_k_probs), 0, 0, 1, 1}, {&__pyx_n_s_probs_fail, __pyx_k_probs_fail, sizeof(__pyx_k_probs_fail), 0, 0, 1, 1}, {&__pyx_n_s_probs_nv, __pyx_k_probs_nv, sizeof(__pyx_k_probs_nv), 0, 0, 1, 1}, @@ -5351,11 +5350,11 @@ static int __Pyx_InitCachedConstants(void) { /* "ml.pyx":86 * max_beta_add = float('-inf') * # iterate over all victim nodes to find the optimal threshold - * for beta in [0.13]:#np.arange(0.001, .2, .002): # <<<<<<<<<<<<<< - * thresh = log(beta/(1.-beta)) + * for beta in np.arange(0.001, .2, .002): # <<<<<<<<<<<<<< + * thresh = log(beta/(3012*(1.-beta))) * # print 'beta:', beta, 'thresh:', thresh, 'infected:', len(probs[probs>=thresh]) */ - __pyx_tuple_ = PyTuple_Pack(1, __pyx_float_0_13); if (unlikely(!__pyx_tuple_)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 86; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_tuple_ = PyTuple_Pack(3, __pyx_float_0_001, __pyx_float__2, __pyx_float__002); if (unlikely(!__pyx_tuple_)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 86; __pyx_clineno = __LINE__; goto __pyx_L1_error;} __Pyx_GOTREF(__pyx_tuple_); __Pyx_GIVEREF(__pyx_tuple_); @@ -5445,7 +5444,9 @@ static int __Pyx_InitCachedConstants(void) { static int __Pyx_InitGlobals(void) { if (__Pyx_InitStrings(__pyx_string_tab) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; - __pyx_float_0_13 = PyFloat_FromDouble(0.13); if (unlikely(!__pyx_float_0_13)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_float__2 = PyFloat_FromDouble(.2); if (unlikely(!__pyx_float__2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_float__002 = PyFloat_FromDouble(.002); if (unlikely(!__pyx_float__002)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_float_0_001 = PyFloat_FromDouble(0.001); if (unlikely(!__pyx_float_0_001)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} return 0; __pyx_L1_error:; return -1; @@ -5664,64 +5665,6 @@ static PyObject *__Pyx_GetBuiltinName(PyObject *name) { return result; } -static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb) { -#if CYTHON_COMPILING_IN_CPYTHON - PyObject *tmp_type, *tmp_value, *tmp_tb; - PyThreadState *tstate = PyThreadState_GET(); - tmp_type = tstate->curexc_type; - tmp_value = tstate->curexc_value; - tmp_tb = tstate->curexc_traceback; - tstate->curexc_type = type; - tstate->curexc_value = value; - tstate->curexc_traceback = tb; - Py_XDECREF(tmp_type); - Py_XDECREF(tmp_value); - Py_XDECREF(tmp_tb); -#else - PyErr_Restore(type, value, tb); -#endif -} -static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb) { -#if CYTHON_COMPILING_IN_CPYTHON - PyThreadState *tstate = PyThreadState_GET(); - *type = tstate->curexc_type; - *value = tstate->curexc_value; - *tb = tstate->curexc_traceback; - tstate->curexc_type = 0; - tstate->curexc_value = 0; - tstate->curexc_traceback = 0; -#else - PyErr_Fetch(type, value, tb); -#endif -} - -static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno, - CYTHON_UNUSED int lineno, CYTHON_UNUSED const char *filename, - int full_traceback) { - PyObject *old_exc, *old_val, *old_tb; - PyObject *ctx; - __Pyx_ErrFetch(&old_exc, &old_val, &old_tb); - if (full_traceback) { - Py_XINCREF(old_exc); - Py_XINCREF(old_val); - Py_XINCREF(old_tb); - __Pyx_ErrRestore(old_exc, old_val, old_tb); - PyErr_PrintEx(1); - } - #if PY_MAJOR_VERSION < 3 - ctx = PyString_FromString(name); - #else - ctx = PyUnicode_FromString(name); - #endif - __Pyx_ErrRestore(old_exc, old_val, old_tb); - if (!ctx) { - PyErr_WriteUnraisable(Py_None); - } else { - PyErr_WriteUnraisable(ctx); - Py_DECREF(ctx); - } -} - static void __Pyx_RaiseArgtupleInvalid( const char* func_name, int exact, @@ -6904,6 +6847,37 @@ static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname) { PyErr_Format(PyExc_UnboundLocalError, "local variable '%s' referenced before assignment", varname); } +static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb) { +#if CYTHON_COMPILING_IN_CPYTHON + PyObject *tmp_type, *tmp_value, *tmp_tb; + PyThreadState *tstate = PyThreadState_GET(); + tmp_type = tstate->curexc_type; + tmp_value = tstate->curexc_value; + tmp_tb = tstate->curexc_traceback; + tstate->curexc_type = type; + tstate->curexc_value = value; + tstate->curexc_traceback = tb; + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); +#else + PyErr_Restore(type, value, tb); +#endif +} +static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb) { +#if CYTHON_COMPILING_IN_CPYTHON + PyThreadState *tstate = PyThreadState_GET(); + *type = tstate->curexc_type; + *value = tstate->curexc_value; + *tb = tstate->curexc_traceback; + tstate->curexc_type = 0; + tstate->curexc_value = 0; + tstate->curexc_traceback = 0; +#else + PyErr_Fetch(type, value, tb); +#endif +} + #if PY_MAJOR_VERSION < 3 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, CYTHON_UNUSED PyObject *cause) { @@ -7314,147 +7288,6 @@ bad: return module; } -#if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION < 3 -static PyObject *__Pyx_GetStdout(void) { - PyObject *f = PySys_GetObject((char *)"stdout"); - if (!f) { - PyErr_SetString(PyExc_RuntimeError, "lost sys.stdout"); - } - return f; -} -static int __Pyx_Print(PyObject* f, PyObject *arg_tuple, int newline) { - int i; - if (!f) { - if (!(f = __Pyx_GetStdout())) - return -1; - } - Py_INCREF(f); - for (i=0; i < PyTuple_GET_SIZE(arg_tuple); i++) { - PyObject* v; - if (PyFile_SoftSpace(f, 1)) { - if (PyFile_WriteString(" ", f) < 0) - goto error; - } - v = PyTuple_GET_ITEM(arg_tuple, i); - if (PyFile_WriteObject(v, f, Py_PRINT_RAW) < 0) - goto error; - if (PyString_Check(v)) { - char *s = PyString_AsString(v); - Py_ssize_t len = PyString_Size(v); - if (len > 0) { - switch (s[len-1]) { - case ' ': break; - case '\f': case '\r': case '\n': case '\t': case '\v': - PyFile_SoftSpace(f, 0); - break; - default: break; - } - } - } - } - if (newline) { - if (PyFile_WriteString("\n", f) < 0) - goto error; - PyFile_SoftSpace(f, 0); - } - Py_DECREF(f); - return 0; -error: - Py_DECREF(f); - return -1; -} -#else -static int __Pyx_Print(PyObject* stream, PyObject *arg_tuple, int newline) { - PyObject* kwargs = 0; - PyObject* result = 0; - PyObject* end_string; - if (unlikely(!__pyx_print)) { - __pyx_print = PyObject_GetAttr(__pyx_b, __pyx_n_s_print); - if (!__pyx_print) - return -1; - } - if (stream) { - kwargs = PyDict_New(); - if (unlikely(!kwargs)) - return -1; - if (unlikely(PyDict_SetItem(kwargs, __pyx_n_s_file, stream) < 0)) - goto bad; - if (!newline) { - end_string = PyUnicode_FromStringAndSize(" ", 1); - if (unlikely(!end_string)) - goto bad; - if (PyDict_SetItem(kwargs, __pyx_n_s_end, end_string) < 0) { - Py_DECREF(end_string); - goto bad; - } - Py_DECREF(end_string); - } - } else if (!newline) { - if (unlikely(!__pyx_print_kwargs)) { - __pyx_print_kwargs = PyDict_New(); - if (unlikely(!__pyx_print_kwargs)) - return -1; - end_string = PyUnicode_FromStringAndSize(" ", 1); - if (unlikely(!end_string)) - return -1; - if (PyDict_SetItem(__pyx_print_kwargs, __pyx_n_s_end, end_string) < 0) { - Py_DECREF(end_string); - return -1; - } - Py_DECREF(end_string); - } - kwargs = __pyx_print_kwargs; - } - result = PyObject_Call(__pyx_print, arg_tuple, kwargs); - if (unlikely(kwargs) && (kwargs != __pyx_print_kwargs)) - Py_DECREF(kwargs); - if (!result) - return -1; - Py_DECREF(result); - return 0; -bad: - if (kwargs != __pyx_print_kwargs) - Py_XDECREF(kwargs); - return -1; -} -#endif - -#if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION < 3 -static int __Pyx_PrintOne(PyObject* f, PyObject *o) { - if (!f) { - if (!(f = __Pyx_GetStdout())) - return -1; - } - Py_INCREF(f); - if (PyFile_SoftSpace(f, 0)) { - if (PyFile_WriteString(" ", f) < 0) - goto error; - } - if (PyFile_WriteObject(o, f, Py_PRINT_RAW) < 0) - goto error; - if (PyFile_WriteString("\n", f) < 0) - goto error; - Py_DECREF(f); - return 0; -error: - Py_DECREF(f); - return -1; - /* the line below is just to avoid C compiler - * warnings about unused functions */ - return __Pyx_Print(f, NULL, 0); -} -#else -static int __Pyx_PrintOne(PyObject* stream, PyObject *o) { - int res; - PyObject* arg_tuple = PyTuple_Pack(1, o); - if (unlikely(!arg_tuple)) - return -1; - res = __Pyx_Print(stream, arg_tuple, 1); - Py_DECREF(arg_tuple); - return res; -} -#endif - static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { const int neg_one = (int) -1, const_zero = 0; const int is_unsigned = neg_one > const_zero; |