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2015-09-13updated prediction code for new model and data formatBen Green
2015-09-13changed background model from sin^2 to sinBen Green
2015-09-09updated R scriptsBen Green
2015-08-30wrote script to find background rate using nlsBen Green
2015-08-29made simulations much more efficientBen Green
2015-08-23get dag-dat for dist=2 edgesBen Green
2015-08-22added age to sim analysis and updated data generation for new modelBen Green
2015-08-01minor updatesBen Green
2015-07-08updated temporal model for different time scales, ran some testsBen Green
2015-07-02just some minor tests with mlBen Green
2015-07-02in which the model works!!Ben Green
2015-07-01Got predict-victims running in parallel, drastically reducing the timeBen Green
for each test. Also changed how we get the rankings of infected individuals each day.
2015-06-28Worked on synthetic data recovery so we can tell how high the actualBen Green
infector is ranked among all potential parents. Cleaned up code for the predicting victims benchmarking test.
2015-06-25Worked on process to generate cascades in R, recover them in ml2, andBen Green
compare true/recovered. Results look good: ml2 finds close-to-actual parameters and gets ~60% of the infectors right. I will check how many recovery gets in the top 2 or 3 infectors.
2015-06-20tried generating cascades and recovering parameters, still got the sameBen Green
result where optimization minimizes alpha, delta as much as possible
2015-06-15minor changes for testingBen Green
2015-06-09corrected age to account for each node’s spawn dateBen Green
2015-06-08added my R scriptsBen Green