From 1212a9d32dbc809bcce679b9d36f3a233af3193e Mon Sep 17 00:00:00 2001
From: Thibaut Horel <thibaut.horel@gmail.com>
Date: Fri, 21 Aug 2015 03:14:10 -0700
Subject: Switch to stow

---
 .dmenu/dmenurc                          |   1 -
 .dmenu/open.sh                          |   6 -
 .git_ignore                             |   8 -
 .gitconfig                              |  12 --
 .gitmodules                             |  28 +--
 .gvimrc                                 |   2 -
 .oh-my-zsh                              |   1 -
 .vim/autoload/pathogen.vim              | 328 --------------------------------
 .vim/bundle/ctrlp.vim                   |   1 -
 .vim/bundle/julia-vim                   |   1 -
 .vim/bundle/molokai                     |   1 -
 .vim/bundle/nerdtree                    |   1 -
 .vim/bundle/pig.vim                     |   1 -
 .vim/bundle/python-mode                 |   1 -
 .vim/bundle/rainbow_parentheses.vim     |   1 -
 .vim/bundle/sessionman.vim              |   1 -
 .vim/bundle/tagbar                      |   1 -
 .vim/bundle/vim-fugitive                |   1 -
 .vim/bundle/vim-ipython                 |   1 -
 .vim/bundle/vim-surround                |   1 -
 .vim/bundle/vimwiki                     |   1 -
 .vim/pig.vim                            |   1 -
 .vimrc                                  | 123 ------------
 .zshrc                                  |  55 ------
 README                                  |   6 -
 deploy                                  |  10 -
 dmenu/.dmenu/dmenurc                    |   1 +
 dmenu/.dmenu/open.sh                    |   6 +
 git/.git_ignore                         |   8 +
 git/.gitconfig                          |  12 ++
 vim/.gvimrc                             |   2 +
 vim/.vim/autoload/pathogen.vim          | 328 ++++++++++++++++++++++++++++++++
 vim/.vim/bundle/ctrlp.vim               |   1 +
 vim/.vim/bundle/julia-vim               |   1 +
 vim/.vim/bundle/molokai                 |   1 +
 vim/.vim/bundle/nerdtree                |   1 +
 vim/.vim/bundle/pig.vim                 |   1 +
 vim/.vim/bundle/python-mode             |   1 +
 vim/.vim/bundle/rainbow_parentheses.vim |   1 +
 vim/.vim/bundle/sessionman.vim          |   1 +
 vim/.vim/bundle/tagbar                  |   1 +
 vim/.vim/bundle/vim-fugitive            |   1 +
 vim/.vim/bundle/vim-ipython             |   1 +
 vim/.vim/bundle/vim-surround            |   1 +
 vim/.vim/bundle/vimwiki                 |   1 +
 vim/.vimrc                              | 123 ++++++++++++
 zsh/.oh-my-zsh                          |   1 +
 zsh/.zshrc                              |  55 ++++++
 48 files changed, 563 insertions(+), 580 deletions(-)
 delete mode 100644 .dmenu/dmenurc
 delete mode 100755 .dmenu/open.sh
 delete mode 100644 .git_ignore
 delete mode 100644 .gitconfig
 delete mode 100644 .gvimrc
 delete mode 160000 .oh-my-zsh
 delete mode 100644 .vim/autoload/pathogen.vim
 delete mode 160000 .vim/bundle/ctrlp.vim
 delete mode 160000 .vim/bundle/julia-vim
 delete mode 160000 .vim/bundle/molokai
 delete mode 160000 .vim/bundle/nerdtree
 delete mode 160000 .vim/bundle/pig.vim
 delete mode 160000 .vim/bundle/python-mode
 delete mode 160000 .vim/bundle/rainbow_parentheses.vim
 delete mode 160000 .vim/bundle/sessionman.vim
 delete mode 160000 .vim/bundle/tagbar
 delete mode 160000 .vim/bundle/vim-fugitive
 delete mode 160000 .vim/bundle/vim-ipython
 delete mode 160000 .vim/bundle/vim-surround
 delete mode 160000 .vim/bundle/vimwiki
 delete mode 160000 .vim/pig.vim
 delete mode 100644 .vimrc
 delete mode 100644 .zshrc
 delete mode 100644 README
 delete mode 100755 deploy
 create mode 100644 dmenu/.dmenu/dmenurc
 create mode 100755 dmenu/.dmenu/open.sh
 create mode 100644 git/.git_ignore
 create mode 100644 git/.gitconfig
 create mode 100644 vim/.gvimrc
 create mode 100644 vim/.vim/autoload/pathogen.vim
 create mode 160000 vim/.vim/bundle/ctrlp.vim
 create mode 160000 vim/.vim/bundle/julia-vim
 create mode 160000 vim/.vim/bundle/molokai
 create mode 160000 vim/.vim/bundle/nerdtree
 create mode 160000 vim/.vim/bundle/pig.vim
 create mode 160000 vim/.vim/bundle/python-mode
 create mode 160000 vim/.vim/bundle/rainbow_parentheses.vim
 create mode 160000 vim/.vim/bundle/sessionman.vim
 create mode 160000 vim/.vim/bundle/tagbar
 create mode 160000 vim/.vim/bundle/vim-fugitive
 create mode 160000 vim/.vim/bundle/vim-ipython
 create mode 160000 vim/.vim/bundle/vim-surround
 create mode 160000 vim/.vim/bundle/vimwiki
 create mode 100644 vim/.vimrc
 create mode 160000 zsh/.oh-my-zsh
 create mode 100644 zsh/.zshrc

diff --git a/.dmenu/dmenurc b/.dmenu/dmenurc
deleted file mode 100644
index 2e68bd1..0000000
--- a/.dmenu/dmenurc
+++ /dev/null
@@ -1 +0,0 @@
-DMENU="dmenu -fn Terminus-10 -h 20"
diff --git a/.dmenu/open.sh b/.dmenu/open.sh
deleted file mode 100755
index a9b9da6..0000000
--- a/.dmenu/open.sh
+++ /dev/null
@@ -1,6 +0,0 @@
-#! /bin/bash
-. $HOME/.dmenu/dmenurc
-FILE=$(find ~ -path "$HOME/.*" -prune -o -path "*.git" -prune -o -mtime -7 -type f -printf '%TY-%Tm-%Td %TT\t%p\n' | sort -r | cut -f2 | cut -d/ -f4- | $DMENU -p Open)
-if [ -n "${FILE}" ]; then
-    xdg-open $HOME/$FILE
-fi
diff --git a/.git_ignore b/.git_ignore
deleted file mode 100644
index 25b9412..0000000
--- a/.git_ignore
+++ /dev/null
@@ -1,8 +0,0 @@
-.*~
-\#*\#
-.*.swp
-*.pyc
-.ropeproject
-*.synctex.gz
-*.fdb_latexmk
-*.fls
diff --git a/.gitconfig b/.gitconfig
deleted file mode 100644
index a4472b1..0000000
--- a/.gitconfig
+++ /dev/null
@@ -1,12 +0,0 @@
-[user]
-	name = Thibaut Horel
-	email = thibaut.horel@gmail.com
-[color]
-	ui = true
-[core]
-	editor = vim
-	excludesfile = ~/.git_ignore
-[alias]
-	lg = log --color --graph --pretty=format:'%Cred%h%Creset -%C(yellow)%d%Creset %s %Cgreen(%cr) %C(bold blue)<%an>%Creset' --abbrev-commit --
-[push]
-	default = simple
diff --git a/.gitmodules b/.gitmodules
index 4af9f39..cbfc814 100644
--- a/.gitmodules
+++ b/.gitmodules
@@ -1,45 +1,45 @@
 [submodule ".oh-my-zsh"]
-	path = .oh-my-zsh
+	path = zsh/.oh-my-zsh
 	url = git://github.com/robbyrussell/oh-my-zsh.git
 [submodule ".vim/bundle/nerdtree"]
-	path = .vim/bundle/nerdtree
+	path = vim/.vim/bundle/nerdtree
 	url = https://github.com/scrooloose/nerdtree.git
 [submodule ".vim/bundle/python-mode"]
-	path = .vim/bundle/python-mode
+	path = vim/.vim/bundle/python-mode
 	url = git://github.com/klen/python-mode.git
 [submodule ".vim/bundle/vim-fugitive"]
-	path = .vim/bundle/vim-fugitive
+	path = vim/.vim/bundle/vim-fugitive
 	url = git://github.com/tpope/vim-fugitive.git
 [submodule ".vim/bundle/ctrlp.vim"]
-	path = .vim/bundle/ctrlp.vim
+	path = vim/.vim/bundle/ctrlp.vim
 	url = https://github.com/kien/ctrlp.vim.git
 [submodule ".vim/bundle/rainbow_parentheses.vim"]
-	path = .vim/bundle/rainbow_parentheses.vim
+	path = vim/.vim/bundle/rainbow_parentheses.vim
 	url = https://github.com/kien/rainbow_parentheses.vim.git
 [submodule ".vim/bundle/tagbar"]
-	path = .vim/bundle/tagbar
+	path = vim/.vim/bundle/tagbar
 	url = https://github.com/majutsushi/tagbar.git
 [submodule ".vim/bundle/sessionman.vim"]
-	path = .vim/bundle/sessionman.vim
+	path = vim/.vim/bundle/sessionman.vim
 	url = https://github.com/vim-scripts/sessionman.vim.git
 [submodule ".vim/bundle/vim-surround"]
-	path = .vim/bundle/vim-surround
+	path = vim/.vim/bundle/vim-surround
 	url = https://github.com/tpope/vim-surround.git
 [submodule ".vim/bundle/vim-ipython"]
-	path = .vim/bundle/vim-ipython
+	path = vim/.vim/bundle/vim-ipython
 	url = https://github.com/ivanov/vim-ipython.git
 [submodule ".vim/bundle/molokai"]
-	path = .vim/bundle/molokai
+	path = vim/.vim/bundle/molokai
 	url = https://github.com/tomasr/molokai.git
 [submodule ".vim/bundle/vimwiki"]
-	path = .vim/bundle/vimwiki
+	path = vim/.vim/bundle/vimwiki
 	url = git://github.com/vim-scripts/vimwiki.git
 [submodule ".vim/bundle/julia-vim"]
-	path = .vim/bundle/julia-vim
+	path = vim/.vim/bundle/julia-vim
 	url = git://github.com/JuliaLang/julia-vim.git
 [submodule ".vim/pig.vim"]
 	path = .vim/pig.vim
 	url = https://github.com/motus/pig.vim.git
 [submodule ".vim/bundle/pig.vim"]
-	path = .vim/bundle/pig.vim
+	path = vim/.vim/bundle/pig.vim
 	url = https://github.com/motus/pig.vim.git
diff --git a/.gvimrc b/.gvimrc
deleted file mode 100644
index 6b7b63c..0000000
--- a/.gvimrc
+++ /dev/null
@@ -1,2 +0,0 @@
-set guioptions=aeigmt
-set gfn="Inconsolata\ Medium\ 12"
diff --git a/.oh-my-zsh b/.oh-my-zsh
deleted file mode 160000
index 192de6b..0000000
--- a/.oh-my-zsh
+++ /dev/null
@@ -1 +0,0 @@
-Subproject commit 192de6bcffb0294e19f4203f6f7dc1a7f3e427be
diff --git a/.vim/autoload/pathogen.vim b/.vim/autoload/pathogen.vim
deleted file mode 100644
index 16c21fe..0000000
--- a/.vim/autoload/pathogen.vim
+++ /dev/null
@@ -1,328 +0,0 @@
-" pathogen.vim - path option manipulation
-" Maintainer:   Tim Pope <http://tpo.pe/>
-" Version:      2.2
-
-" Install in ~/.vim/autoload (or ~\vimfiles\autoload).
-"
-" For management of individually installed plugins in ~/.vim/bundle (or
-" ~\vimfiles\bundle), adding `call pathogen#infect()` to the top of your
-" .vimrc is the only other setup necessary.
-"
-" The API is documented inline below.  For maximum ease of reading,
-" :set foldmethod=marker
-
-if exists("g:loaded_pathogen") || &cp
-  finish
-endif
-let g:loaded_pathogen = 1
-
-function! s:warn(msg)
-  if &verbose
-    echohl WarningMsg
-    echomsg a:msg
-    echohl NONE
-  endif
-endfunction
-
-" Point of entry for basic default usage.  Give a relative path to invoke
-" pathogen#incubate() (defaults to "bundle/{}"), or an absolute path to invoke
-" pathogen#surround().  For backwards compatibility purposes, a full path that
-" does not end in {} or * is given to pathogen#runtime_prepend_subdirectories()
-" instead.
-function! pathogen#infect(...) abort " {{{1
-  for path in a:0 ? reverse(copy(a:000)) : ['bundle/{}']
-    if path =~# '^[^\\/]\+$'
-      call s:warn('Change pathogen#infect('.string(path).') to pathogen#infect('.string(path.'/{}').')')
-      call pathogen#incubate(path . '/{}')
-    elseif path =~# '^[^\\/]\+[\\/]\%({}\|\*\)$'
-      call pathogen#incubate(path)
-    elseif path =~# '[\\/]\%({}\|\*\)$'
-      call pathogen#surround(path)
-    else
-      call s:warn('Change pathogen#infect('.string(path).') to pathogen#infect('.string(path.'/{}').')')
-      call pathogen#surround(path . '/{}')
-    endif
-  endfor
-  call pathogen#cycle_filetype()
-  return ''
-endfunction " }}}1
-
-" Split a path into a list.
-function! pathogen#split(path) abort " {{{1
-  if type(a:path) == type([]) | return a:path | endif
-  let split = split(a:path,'\\\@<!\%(\\\\\)*\zs,')
-  return map(split,'substitute(v:val,''\\\([\\,]\)'',''\1'',"g")')
-endfunction " }}}1
-
-" Convert a list to a path.
-function! pathogen#join(...) abort " {{{1
-  if type(a:1) == type(1) && a:1
-    let i = 1
-    let space = ' '
-  else
-    let i = 0
-    let space = ''
-  endif
-  let path = ""
-  while i < a:0
-    if type(a:000[i]) == type([])
-      let list = a:000[i]
-      let j = 0
-      while j < len(list)
-        let escaped = substitute(list[j],'[,'.space.']\|\\[\,'.space.']\@=','\\&','g')
-        let path .= ',' . escaped
-        let j += 1
-      endwhile
-    else
-      let path .= "," . a:000[i]
-    endif
-    let i += 1
-  endwhile
-  return substitute(path,'^,','','')
-endfunction " }}}1
-
-" Convert a list to a path with escaped spaces for 'path', 'tag', etc.
-function! pathogen#legacyjoin(...) abort " {{{1
-  return call('pathogen#join',[1] + a:000)
-endfunction " }}}1
-
-" Remove duplicates from a list.
-function! pathogen#uniq(list) abort " {{{1
-  let i = 0
-  let seen = {}
-  while i < len(a:list)
-    if (a:list[i] ==# '' && exists('empty')) || has_key(seen,a:list[i])
-      call remove(a:list,i)
-    elseif a:list[i] ==# ''
-      let i += 1
-      let empty = 1
-    else
-      let seen[a:list[i]] = 1
-      let i += 1
-    endif
-  endwhile
-  return a:list
-endfunction " }}}1
-
-" \ on Windows unless shellslash is set, / everywhere else.
-function! pathogen#separator() abort " {{{1
-  return !exists("+shellslash") || &shellslash ? '/' : '\'
-endfunction " }}}1
-
-" Convenience wrapper around glob() which returns a list.
-function! pathogen#glob(pattern) abort " {{{1
-  let files = split(glob(a:pattern),"\n")
-  return map(files,'substitute(v:val,"[".pathogen#separator()."/]$","","")')
-endfunction "}}}1
-
-" Like pathogen#glob(), only limit the results to directories.
-function! pathogen#glob_directories(pattern) abort " {{{1
-  return filter(pathogen#glob(a:pattern),'isdirectory(v:val)')
-endfunction "}}}1
-
-" Turn filetype detection off and back on again if it was already enabled.
-function! pathogen#cycle_filetype() " {{{1
-  if exists('g:did_load_filetypes')
-    filetype off
-    filetype on
-  endif
-endfunction " }}}1
-
-" Check if a bundle is disabled.  A bundle is considered disabled if it ends
-" in a tilde or its basename or full name is included in the list
-" g:pathogen_disabled.
-function! pathogen#is_disabled(path) " {{{1
-  if a:path =~# '\~$'
-    return 1
-  elseif !exists("g:pathogen_disabled")
-    return 0
-  endif
-  let sep = pathogen#separator()
-  let blacklist = g:pathogen_disabled
-  return index(blacklist, strpart(a:path, strridx(a:path, sep)+1)) != -1 && index(blacklist, a:path) != 1
-endfunction "}}}1
-
-" Prepend the given directory to the runtime path and append its corresponding
-" after directory.  If the directory is already included, move it to the
-" outermost position.  Wildcards are added as is.  Ending a path in /{} causes
-" all subdirectories to be added (except those in g:pathogen_disabled).
-function! pathogen#surround(path) abort " {{{1
-  let sep = pathogen#separator()
-  let rtp = pathogen#split(&rtp)
-  if a:path =~# '[\\/]{}$'
-    let path = fnamemodify(a:path[0:-4], ':p:s?[\\/]\=$??')
-    let before = filter(pathogen#glob_directories(path.sep.'*'), '!pathogen#is_disabled(v:val)')
-    let after  = filter(reverse(pathogen#glob_directories(path.sep."*".sep."after")), '!pathogen#is_disabled(v:val[0:-7])')
-    call filter(rtp,'v:val[0:strlen(path)-1] !=# path')
-  else
-    let path = fnamemodify(a:path, ':p:s?[\\/]\=$??')
-    let before = [path]
-    let after = [path . sep . 'after']
-    call filter(rtp, 'index(before + after, v:val) == -1')
-  endif
-  let &rtp = pathogen#join(before, rtp, after)
-  return &rtp
-endfunction " }}}1
-
-" Prepend all subdirectories of path to the rtp, and append all 'after'
-" directories in those subdirectories.  Deprecated.
-function! pathogen#runtime_prepend_subdirectories(path) " {{{1
-  call s:warn('Change pathogen#runtime_prepend_subdirectories('.string(a:path).') to pathogen#surround('.string(a:path.'/{}').')')
-  return pathogen#surround(a:path . pathogen#separator() . '{}')
-endfunction " }}}1
-
-" For each directory in the runtime path, add a second entry with the given
-" argument appended.  If the argument ends in '/{}', add a separate entry for
-" each subdirectory.  The default argument is 'bundle/{}', which means that
-" .vim/bundle/*, $VIM/vimfiles/bundle/*, $VIMRUNTIME/bundle/*,
-" $VIM/vim/files/bundle/*/after, and .vim/bundle/*/after will be added (on
-" UNIX).
-function! pathogen#incubate(...) abort " {{{1
-  let sep = pathogen#separator()
-  let name = a:0 ? a:1 : 'bundle/{}'
-  if "\n".s:done_bundles =~# "\\M\n".name."\n"
-    return ""
-  endif
-  let s:done_bundles .= name . "\n"
-  let list = []
-  for dir in pathogen#split(&rtp)
-    if dir =~# '\<after$'
-      if name =~# '{}$'
-        let list +=  filter(pathogen#glob_directories(substitute(dir,'after$',name[0:-3],'').'*[^~]'.sep.'after'), '!pathogen#is_disabled(v:val[0:-7])') + [dir]
-      else
-        let list += [dir, substitute(dir, 'after$', '', '') . name . sep . 'after']
-      endif
-    else
-      if name =~# '{}$'
-        let list +=  [dir] + filter(pathogen#glob_directories(dir.sep.name[0:-3].'*[^~]'), '!pathogen#is_disabled(v:val)')
-      else
-        let list += [dir . sep . name, dir]
-      endif
-    endif
-  endfor
-  let &rtp = pathogen#join(pathogen#uniq(list))
-  return 1
-endfunction " }}}1
-
-" Deprecated alias for pathogen#incubate().
-function! pathogen#runtime_append_all_bundles(...) abort " {{{1
-  if a:0
-    call s:warn('Change pathogen#runtime_append_all_bundles('.string(a:1).') to pathogen#incubate('.string(a:1.'/{}').')')
-  else
-    call s:warn('Change pathogen#runtime_append_all_bundles() to pathogen#incubate()')
-  endif
-  return call('pathogen#incubate', map(copy(a:000),'v:val . "/{}"'))
-endfunction
-
-let s:done_bundles = ''
-" }}}1
-
-" Invoke :helptags on all non-$VIM doc directories in runtimepath.
-function! pathogen#helptags() abort " {{{1
-  let sep = pathogen#separator()
-  for glob in pathogen#split(&rtp)
-    for dir in split(glob(glob), "\n")
-      if (dir.sep)[0 : strlen($VIMRUNTIME)] !=# $VIMRUNTIME.sep && filewritable(dir.sep.'doc') == 2 && !empty(filter(split(glob(dir.sep.'doc'.sep.'*'),"\n>"),'!isdirectory(v:val)')) && (!filereadable(dir.sep.'doc'.sep.'tags') || filewritable(dir.sep.'doc'.sep.'tags'))
-        helptags `=dir.'/doc'`
-      endif
-    endfor
-  endfor
-endfunction " }}}1
-
-command! -bar Helptags :call pathogen#helptags()
-
-" Execute the given command.  This is basically a backdoor for --remote-expr.
-function! pathogen#execute(...) abort " {{{1
-  for command in a:000
-    execute command
-  endfor
-  return ''
-endfunction " }}}1
-
-" Like findfile(), but hardcoded to use the runtimepath.
-function! pathogen#runtime_findfile(file,count) abort "{{{1
-  let rtp = pathogen#join(1,pathogen#split(&rtp))
-  let file = findfile(a:file,rtp,a:count)
-  if file ==# ''
-    return ''
-  else
-    return fnamemodify(file,':p')
-  endif
-endfunction " }}}1
-
-" Backport of fnameescape().
-function! pathogen#fnameescape(string) abort " {{{1
-  if exists('*fnameescape')
-    return fnameescape(a:string)
-  elseif a:string ==# '-'
-    return '\-'
-  else
-    return substitute(escape(a:string," \t\n*?[{`$\\%#'\"|!<"),'^[+>]','\\&','')
-  endif
-endfunction " }}}1
-
-if exists(':Vedit')
-  finish
-endif
-
-let s:vopen_warning = 0
-
-function! s:find(count,cmd,file,lcd) " {{{1
-  let rtp = pathogen#join(1,pathogen#split(&runtimepath))
-  let file = pathogen#runtime_findfile(a:file,a:count)
-  if file ==# ''
-    return "echoerr 'E345: Can''t find file \"".a:file."\" in runtimepath'"
-  endif
-  if !s:vopen_warning
-    let s:vopen_warning = 1
-    let warning = '|echohl WarningMsg|echo "Install scriptease.vim to continue using :V'.a:cmd.'"|echohl NONE'
-  else
-    let warning = ''
-  endif
-  if a:lcd
-    let path = file[0:-strlen(a:file)-2]
-    execute 'lcd `=path`'
-    return a:cmd.' '.pathogen#fnameescape(a:file) . warning
-  else
-    return a:cmd.' '.pathogen#fnameescape(file) . warning
-  endif
-endfunction " }}}1
-
-function! s:Findcomplete(A,L,P) " {{{1
-  let sep = pathogen#separator()
-  let cheats = {
-        \'a': 'autoload',
-        \'d': 'doc',
-        \'f': 'ftplugin',
-        \'i': 'indent',
-        \'p': 'plugin',
-        \'s': 'syntax'}
-  if a:A =~# '^\w[\\/]' && has_key(cheats,a:A[0])
-    let request = cheats[a:A[0]].a:A[1:-1]
-  else
-    let request = a:A
-  endif
-  let pattern = substitute(request,'/\|\'.sep,'*'.sep,'g').'*'
-  let found = {}
-  for path in pathogen#split(&runtimepath)
-    let path = expand(path, ':p')
-    let matches = split(glob(path.sep.pattern),"\n")
-    call map(matches,'isdirectory(v:val) ? v:val.sep : v:val')
-    call map(matches,'expand(v:val, ":p")[strlen(path)+1:-1]')
-    for match in matches
-      let found[match] = 1
-    endfor
-  endfor
-  return sort(keys(found))
-endfunction " }}}1
-
-command! -bar -bang -range=1 -nargs=1 -complete=customlist,s:Findcomplete Ve       :execute s:find(<count>,'edit<bang>',<q-args>,0)
-command! -bar -bang -range=1 -nargs=1 -complete=customlist,s:Findcomplete Vedit    :execute s:find(<count>,'edit<bang>',<q-args>,0)
-command! -bar -bang -range=1 -nargs=1 -complete=customlist,s:Findcomplete Vopen    :execute s:find(<count>,'edit<bang>',<q-args>,1)
-command! -bar -bang -range=1 -nargs=1 -complete=customlist,s:Findcomplete Vsplit   :execute s:find(<count>,'split',<q-args>,<bang>1)
-command! -bar -bang -range=1 -nargs=1 -complete=customlist,s:Findcomplete Vvsplit  :execute s:find(<count>,'vsplit',<q-args>,<bang>1)
-command! -bar -bang -range=1 -nargs=1 -complete=customlist,s:Findcomplete Vtabedit :execute s:find(<count>,'tabedit',<q-args>,<bang>1)
-command! -bar -bang -range=1 -nargs=1 -complete=customlist,s:Findcomplete Vpedit   :execute s:find(<count>,'pedit',<q-args>,<bang>1)
-command! -bar -bang -range=1 -nargs=1 -complete=customlist,s:Findcomplete Vread    :execute s:find(<count>,'read',<q-args>,<bang>1)
-
-" vim:set et sw=2:
diff --git a/.vim/bundle/ctrlp.vim b/.vim/bundle/ctrlp.vim
deleted file mode 160000
index b5d3fe6..0000000
--- a/.vim/bundle/ctrlp.vim
+++ /dev/null
@@ -1 +0,0 @@
-Subproject commit b5d3fe66a58a13d2ff8b6391f4387608496a030f
diff --git a/.vim/bundle/julia-vim b/.vim/bundle/julia-vim
deleted file mode 160000
index 84815ce..0000000
--- a/.vim/bundle/julia-vim
+++ /dev/null
@@ -1 +0,0 @@
-Subproject commit 84815cec6c0c277297f2557d563550a0e7e25f5a
diff --git a/.vim/bundle/molokai b/.vim/bundle/molokai
deleted file mode 160000
index db8ce13..0000000
--- a/.vim/bundle/molokai
+++ /dev/null
@@ -1 +0,0 @@
-Subproject commit db8ce13b3737d3ddea8368498183d7c204a762eb
diff --git a/.vim/bundle/nerdtree b/.vim/bundle/nerdtree
deleted file mode 160000
index bcf3de4..0000000
--- a/.vim/bundle/nerdtree
+++ /dev/null
@@ -1 +0,0 @@
-Subproject commit bcf3de4fdffae45fc7c85b6b84a01b37177924aa
diff --git a/.vim/bundle/pig.vim b/.vim/bundle/pig.vim
deleted file mode 160000
index 4157cac..0000000
--- a/.vim/bundle/pig.vim
+++ /dev/null
@@ -1 +0,0 @@
-Subproject commit 4157cac950c49ca6fb59f1dec2a41f2df90a92e1
diff --git a/.vim/bundle/python-mode b/.vim/bundle/python-mode
deleted file mode 160000
index c6a872a..0000000
--- a/.vim/bundle/python-mode
+++ /dev/null
@@ -1 +0,0 @@
-Subproject commit c6a872a64530979f4aac46d765c577581cb7fc36
diff --git a/.vim/bundle/rainbow_parentheses.vim b/.vim/bundle/rainbow_parentheses.vim
deleted file mode 160000
index eb8baa5..0000000
--- a/.vim/bundle/rainbow_parentheses.vim
+++ /dev/null
@@ -1 +0,0 @@
-Subproject commit eb8baa5428bde10ecc1cb14eed1d6e16f5f24695
diff --git a/.vim/bundle/sessionman.vim b/.vim/bundle/sessionman.vim
deleted file mode 160000
index 845d35b..0000000
--- a/.vim/bundle/sessionman.vim
+++ /dev/null
@@ -1 +0,0 @@
-Subproject commit 845d35b84c5c51f631d8bfa4afe3edc126102ba9
diff --git a/.vim/bundle/tagbar b/.vim/bundle/tagbar
deleted file mode 160000
index 7b36c46..0000000
--- a/.vim/bundle/tagbar
+++ /dev/null
@@ -1 +0,0 @@
-Subproject commit 7b36c46d17d57db34fdb0adac9ba6382d0bb5e66
diff --git a/.vim/bundle/vim-fugitive b/.vim/bundle/vim-fugitive
deleted file mode 160000
index b319b69..0000000
--- a/.vim/bundle/vim-fugitive
+++ /dev/null
@@ -1 +0,0 @@
-Subproject commit b319b694539017dcd789dc2c42f784a30d7b28b8
diff --git a/.vim/bundle/vim-ipython b/.vim/bundle/vim-ipython
deleted file mode 160000
index 42499f0..0000000
--- a/.vim/bundle/vim-ipython
+++ /dev/null
@@ -1 +0,0 @@
-Subproject commit 42499f094b805b90b683afa5009cee99abd0bb75
diff --git a/.vim/bundle/vim-surround b/.vim/bundle/vim-surround
deleted file mode 160000
index 2d05440..0000000
--- a/.vim/bundle/vim-surround
+++ /dev/null
@@ -1 +0,0 @@
-Subproject commit 2d05440ad23f97a7874ebd9b5de3a0e65d25d85c
diff --git a/.vim/bundle/vimwiki b/.vim/bundle/vimwiki
deleted file mode 160000
index cb5c38a..0000000
--- a/.vim/bundle/vimwiki
+++ /dev/null
@@ -1 +0,0 @@
-Subproject commit cb5c38a575bcdffa52747aef962dc9d61c7a8207
diff --git a/.vim/pig.vim b/.vim/pig.vim
deleted file mode 160000
index 4157cac..0000000
--- a/.vim/pig.vim
+++ /dev/null
@@ -1 +0,0 @@
-Subproject commit 4157cac950c49ca6fb59f1dec2a41f2df90a92e1
diff --git a/.vimrc b/.vimrc
deleted file mode 100644
index 11f9e42..0000000
--- a/.vimrc
+++ /dev/null
@@ -1,123 +0,0 @@
-" basic plugin/ syntax support 
-execute pathogen#infect()
-filetype plugin indent on
-syntax on
-
-autocmd bufwritepost .vimrc source $MYVIMRC
-
-" theming
-set t_Co=256
-set background=dark
-colorscheme molokai
-set statusline=%<%f\ %h%m%r%{fugitive#statusline()}%=%-14.(%l,%c%V%)\ %P
-
-set nocompatible
-
-set wrap
-set textwidth=79
-set formatoptions=qrn1
-set colorcolumn=81
-
-set modelines=0
-set tabstop=4
-set shiftwidth=4
-set softtabstop=4
-set expandtab
-set encoding=utf-8
-set scrolloff=3
-set autoindent
-set showmode
-set showcmd
-set hidden
-set wildmenu
-set wildmode=list:longest
-set visualbell
-set cursorline
-set ttyfast
-set ruler
-set backspace=indent,eol,start
-set laststatus=2
-set relativenumber
-set undofile
-set autochdir
-
-set ignorecase
-set smartcase
-set gdefault
-set incsearch
-set showmatch
-set hlsearch
-
-set backup 
-set noswapfile 
-
-" backups
-set undodir=~/.vim/tmp/undo// 
-set backupdir=~/.vim/tmp/backup// 
-set directory=~/.vim/tmp/swap// 
-
-if !isdirectory(expand(&undodir))
-    call mkdir(expand(&undodir), "p")
-endif
-if !isdirectory(expand(&backupdir))
-    call mkdir(expand(&backupdir), "p")
-endif
-if !isdirectory(expand(&directory))
-    call mkdir(expand(&directory), "p")
-endif
-
-let mapleader = ","
-nnoremap <leader><space> :noh<cr>
-nnoremap <S-Tab> %
-nnoremap / /\v
-vnoremap / /\v
-nnoremap <up> <nop>
-nnoremap <down> <nop>
-nnoremap <left> <nop>
-nnoremap <right> <nop>
-inoremap <up> <nop>
-inoremap <down> <nop>
-inoremap <left> <nop>
-inoremap <right> <nop>
-nnoremap j gj
-nnoremap k gk
-nnoremap <F1> :NERDTreeToggle<cr>
-nnoremap <F2> :TagbarToggle<cr>
-nnoremap <F3> :RainbowParenthesesToggleAll<cr>
-nnoremap <c-b> :CtrlPBuffer<cr>
-noremap gV '[V']
-
-" allows for sequential indent/desindent by reselecting the text
-vnoremap < <gv
-vnoremap > >gv
-
-" easy window switching
-nnoremap <C-h> <C-w>h
-nnoremap <C-j> <C-w>j
-nnoremap <C-k> <C-w>k
-nnoremap <C-l> <C-w>l
-
-" window resizing
-nnoremap <C-left> <C-w><
-nnoremap <C-right> <C-w>>
-nnoremap <C-down> <C-w>+
-nnoremap <C-up> <C-w>-
-
-" text bubbling
-" vnoremap <C-up> xkP'[V']
-nnoremap <C-S-up> ddkP
-nnoremap <C-S-down> ddp
-" vnoremap <C-down> xp'[V']
-
-" folding
-set foldlevelstart=99
-nnoremap <Space> za
-nnoremap <S-Space> zA
-vnoremap <S-Space> zA
-
-let g:pymode_lint_write = 0
-let g:pymode_utils_whitespaces = 0
-
-autocmd CursorMovedI *  if pumvisible() == 0|silent! pclose|endif
-autocmd InsertLeave * if pumvisible() == 0|silent! pclose|endif
-autocmd FileType mail set fo+=aw spell
diff --git a/.zshrc b/.zshrc
deleted file mode 100644
index a75baf7..0000000
--- a/.zshrc
+++ /dev/null
@@ -1,55 +0,0 @@
-# Path to your oh-my-zsh configuration.
-ZSH=$HOME/.oh-my-zsh
-
-# Set name of the theme to load.
-# Look in ~/.oh-my-zsh/themes/
-# Optionally, if you set this to "random", it'll load a random theme each
-# time that oh-my-zsh is loaded.
-ZSH_THEME="alanpeabody"
-
-# Example aliases
-# alias zshconfig="mate ~/.zshrc"
-# alias ohmyzsh="mate ~/.oh-my-zsh"
-
-# Set to this to use case-sensitive completion
-CASE_SENSITIVE="true"
-
-# Comment this out to disable weekly auto-update checks
-# DISABLE_AUTO_UPDATE="true"
-# Uncomment following line if you want to disable colors in ls
-# DISABLE_LS_COLORS="true"
-
-# Uncomment following line if you want to disable autosetting terminal title.
-# DISABLE_AUTO_TITLE="true"
-
-# Uncomment following line if you want red dots to be displayed while waiting for completion
-# COMPLETION_WAITING_DOTS="true"
-
-# Which plugins would you like to load? (plugins can be found in ~/.oh-my-zsh/plugins/*)
-# Custom plugins may be added to ~/.oh-my-zsh/custom/plugins/
-# Example format: plugins=(rails git textmate ruby lighthouse)
-plugins=(git archlinux python vi-mode)
-
-source $ZSH/oh-my-zsh.sh
-
-# Customize to your needs...
-unsetopt correct_all
-man() {
-    env \
-        LESS_TERMCAP_mb=$(printf "\e[1;31m") \
-        LESS_TERMCAP_md=$(printf "\e[1;31m") \
-        LESS_TERMCAP_me=$(printf "\e[0m") \
-        LESS_TERMCAP_se=$(printf "\e[0m") \
-        LESS_TERMCAP_so=$(printf "\e[1;44;33m") \
-        LESS_TERMCAP_ue=$(printf "\e[0m") \
-        LESS_TERMCAP_us=$(printf "\e[1;32m") \
-        man "$@"
-}
-
-if [ -f "${HOME}/.gpg-agent-info" ]; then
-  . "${HOME}/.gpg-agent-info"
-  export GPG_AGENT_INFO
-  export SSH_AUTH_SOCK
-fi
-
-bindkey '^R' history-incremental-search-backward
diff --git a/README b/README
deleted file mode 100644
index 93b3570..0000000
--- a/README
+++ /dev/null
@@ -1,6 +0,0 @@
-This configuration relies on external git repositories which are handled as
-submodules. After the first clone use git submodule update --init to import all
-the submodules.
-
-Run ./deploy.sh to deploy dotfiles to the home dir.
-Change the first line in deploy.sh to deploy to another dir.
diff --git a/deploy b/deploy
deleted file mode 100755
index 1a53e6c..0000000
--- a/deploy
+++ /dev/null
@@ -1,10 +0,0 @@
-#! /bin/sh
-DEPLOY_DIR=$HOME/ #don't forget the trailing slash
-
-cd ${0%/*}
-find -type d ! \( -type d -path "*.git" -prune \) -print0 | xargs -0 -I '{}' mkdir -p $DEPLOY_DIR{}
-find ! \( -type d -path "*.git" -prune \) -type f ! -path "./deploy" ! -path "./README" -print0 | while IFS="" read -r -d "" file
-do
-    ln -snf $PWD/$file $DEPLOY_DIR${file%/*}
-done
-
diff --git a/dmenu/.dmenu/dmenurc b/dmenu/.dmenu/dmenurc
new file mode 100644
index 0000000..2e68bd1
--- /dev/null
+++ b/dmenu/.dmenu/dmenurc
@@ -0,0 +1 @@
+DMENU="dmenu -fn Terminus-10 -h 20"
diff --git a/dmenu/.dmenu/open.sh b/dmenu/.dmenu/open.sh
new file mode 100755
index 0000000..a9b9da6
--- /dev/null
+++ b/dmenu/.dmenu/open.sh
@@ -0,0 +1,6 @@
+#! /bin/bash
+. $HOME/.dmenu/dmenurc
+FILE=$(find ~ -path "$HOME/.*" -prune -o -path "*.git" -prune -o -mtime -7 -type f -printf '%TY-%Tm-%Td %TT\t%p\n' | sort -r | cut -f2 | cut -d/ -f4- | $DMENU -p Open)
+if [ -n "${FILE}" ]; then
+    xdg-open $HOME/$FILE
+fi
diff --git a/git/.git_ignore b/git/.git_ignore
new file mode 100644
index 0000000..25b9412
--- /dev/null
+++ b/git/.git_ignore
@@ -0,0 +1,8 @@
+.*~
+\#*\#
+.*.swp
+*.pyc
+.ropeproject
+*.synctex.gz
+*.fdb_latexmk
+*.fls
diff --git a/git/.gitconfig b/git/.gitconfig
new file mode 100644
index 0000000..a4472b1
--- /dev/null
+++ b/git/.gitconfig
@@ -0,0 +1,12 @@
+[user]
+	name = Thibaut Horel
+	email = thibaut.horel@gmail.com
+[color]
+	ui = true
+[core]
+	editor = vim
+	excludesfile = ~/.git_ignore
+[alias]
+	lg = log --color --graph --pretty=format:'%Cred%h%Creset -%C(yellow)%d%Creset %s %Cgreen(%cr) %C(bold blue)<%an>%Creset' --abbrev-commit --
+[push]
+	default = simple
diff --git a/vim/.gvimrc b/vim/.gvimrc
new file mode 100644
index 0000000..6b7b63c
--- /dev/null
+++ b/vim/.gvimrc
@@ -0,0 +1,2 @@
+set guioptions=aeigmt
+set gfn="Inconsolata\ Medium\ 12"
diff --git a/vim/.vim/autoload/pathogen.vim b/vim/.vim/autoload/pathogen.vim
new file mode 100644
index 0000000..16c21fe
--- /dev/null
+++ b/vim/.vim/autoload/pathogen.vim
@@ -0,0 +1,328 @@
+" pathogen.vim - path option manipulation
+" Maintainer:   Tim Pope <http://tpo.pe/>
+" Version:      2.2
+
+" Install in ~/.vim/autoload (or ~\vimfiles\autoload).
+"
+" For management of individually installed plugins in ~/.vim/bundle (or
+" ~\vimfiles\bundle), adding `call pathogen#infect()` to the top of your
+" .vimrc is the only other setup necessary.
+"
+" The API is documented inline below.  For maximum ease of reading,
+" :set foldmethod=marker
+
+if exists("g:loaded_pathogen") || &cp
+  finish
+endif
+let g:loaded_pathogen = 1
+
+function! s:warn(msg)
+  if &verbose
+    echohl WarningMsg
+    echomsg a:msg
+    echohl NONE
+  endif
+endfunction
+
+" Point of entry for basic default usage.  Give a relative path to invoke
+" pathogen#incubate() (defaults to "bundle/{}"), or an absolute path to invoke
+" pathogen#surround().  For backwards compatibility purposes, a full path that
+" does not end in {} or * is given to pathogen#runtime_prepend_subdirectories()
+" instead.
+function! pathogen#infect(...) abort " {{{1
+  for path in a:0 ? reverse(copy(a:000)) : ['bundle/{}']
+    if path =~# '^[^\\/]\+$'
+      call s:warn('Change pathogen#infect('.string(path).') to pathogen#infect('.string(path.'/{}').')')
+      call pathogen#incubate(path . '/{}')
+    elseif path =~# '^[^\\/]\+[\\/]\%({}\|\*\)$'
+      call pathogen#incubate(path)
+    elseif path =~# '[\\/]\%({}\|\*\)$'
+      call pathogen#surround(path)
+    else
+      call s:warn('Change pathogen#infect('.string(path).') to pathogen#infect('.string(path.'/{}').')')
+      call pathogen#surround(path . '/{}')
+    endif
+  endfor
+  call pathogen#cycle_filetype()
+  return ''
+endfunction " }}}1
+
+" Split a path into a list.
+function! pathogen#split(path) abort " {{{1
+  if type(a:path) == type([]) | return a:path | endif
+  let split = split(a:path,'\\\@<!\%(\\\\\)*\zs,')
+  return map(split,'substitute(v:val,''\\\([\\,]\)'',''\1'',"g")')
+endfunction " }}}1
+
+" Convert a list to a path.
+function! pathogen#join(...) abort " {{{1
+  if type(a:1) == type(1) && a:1
+    let i = 1
+    let space = ' '
+  else
+    let i = 0
+    let space = ''
+  endif
+  let path = ""
+  while i < a:0
+    if type(a:000[i]) == type([])
+      let list = a:000[i]
+      let j = 0
+      while j < len(list)
+        let escaped = substitute(list[j],'[,'.space.']\|\\[\,'.space.']\@=','\\&','g')
+        let path .= ',' . escaped
+        let j += 1
+      endwhile
+    else
+      let path .= "," . a:000[i]
+    endif
+    let i += 1
+  endwhile
+  return substitute(path,'^,','','')
+endfunction " }}}1
+
+" Convert a list to a path with escaped spaces for 'path', 'tag', etc.
+function! pathogen#legacyjoin(...) abort " {{{1
+  return call('pathogen#join',[1] + a:000)
+endfunction " }}}1
+
+" Remove duplicates from a list.
+function! pathogen#uniq(list) abort " {{{1
+  let i = 0
+  let seen = {}
+  while i < len(a:list)
+    if (a:list[i] ==# '' && exists('empty')) || has_key(seen,a:list[i])
+      call remove(a:list,i)
+    elseif a:list[i] ==# ''
+      let i += 1
+      let empty = 1
+    else
+      let seen[a:list[i]] = 1
+      let i += 1
+    endif
+  endwhile
+  return a:list
+endfunction " }}}1
+
+" \ on Windows unless shellslash is set, / everywhere else.
+function! pathogen#separator() abort " {{{1
+  return !exists("+shellslash") || &shellslash ? '/' : '\'
+endfunction " }}}1
+
+" Convenience wrapper around glob() which returns a list.
+function! pathogen#glob(pattern) abort " {{{1
+  let files = split(glob(a:pattern),"\n")
+  return map(files,'substitute(v:val,"[".pathogen#separator()."/]$","","")')
+endfunction "}}}1
+
+" Like pathogen#glob(), only limit the results to directories.
+function! pathogen#glob_directories(pattern) abort " {{{1
+  return filter(pathogen#glob(a:pattern),'isdirectory(v:val)')
+endfunction "}}}1
+
+" Turn filetype detection off and back on again if it was already enabled.
+function! pathogen#cycle_filetype() " {{{1
+  if exists('g:did_load_filetypes')
+    filetype off
+    filetype on
+  endif
+endfunction " }}}1
+
+" Check if a bundle is disabled.  A bundle is considered disabled if it ends
+" in a tilde or its basename or full name is included in the list
+" g:pathogen_disabled.
+function! pathogen#is_disabled(path) " {{{1
+  if a:path =~# '\~$'
+    return 1
+  elseif !exists("g:pathogen_disabled")
+    return 0
+  endif
+  let sep = pathogen#separator()
+  let blacklist = g:pathogen_disabled
+  return index(blacklist, strpart(a:path, strridx(a:path, sep)+1)) != -1 && index(blacklist, a:path) != 1
+endfunction "}}}1
+
+" Prepend the given directory to the runtime path and append its corresponding
+" after directory.  If the directory is already included, move it to the
+" outermost position.  Wildcards are added as is.  Ending a path in /{} causes
+" all subdirectories to be added (except those in g:pathogen_disabled).
+function! pathogen#surround(path) abort " {{{1
+  let sep = pathogen#separator()
+  let rtp = pathogen#split(&rtp)
+  if a:path =~# '[\\/]{}$'
+    let path = fnamemodify(a:path[0:-4], ':p:s?[\\/]\=$??')
+    let before = filter(pathogen#glob_directories(path.sep.'*'), '!pathogen#is_disabled(v:val)')
+    let after  = filter(reverse(pathogen#glob_directories(path.sep."*".sep."after")), '!pathogen#is_disabled(v:val[0:-7])')
+    call filter(rtp,'v:val[0:strlen(path)-1] !=# path')
+  else
+    let path = fnamemodify(a:path, ':p:s?[\\/]\=$??')
+    let before = [path]
+    let after = [path . sep . 'after']
+    call filter(rtp, 'index(before + after, v:val) == -1')
+  endif
+  let &rtp = pathogen#join(before, rtp, after)
+  return &rtp
+endfunction " }}}1
+
+" Prepend all subdirectories of path to the rtp, and append all 'after'
+" directories in those subdirectories.  Deprecated.
+function! pathogen#runtime_prepend_subdirectories(path) " {{{1
+  call s:warn('Change pathogen#runtime_prepend_subdirectories('.string(a:path).') to pathogen#surround('.string(a:path.'/{}').')')
+  return pathogen#surround(a:path . pathogen#separator() . '{}')
+endfunction " }}}1
+
+" For each directory in the runtime path, add a second entry with the given
+" argument appended.  If the argument ends in '/{}', add a separate entry for
+" each subdirectory.  The default argument is 'bundle/{}', which means that
+" .vim/bundle/*, $VIM/vimfiles/bundle/*, $VIMRUNTIME/bundle/*,
+" $VIM/vim/files/bundle/*/after, and .vim/bundle/*/after will be added (on
+" UNIX).
+function! pathogen#incubate(...) abort " {{{1
+  let sep = pathogen#separator()
+  let name = a:0 ? a:1 : 'bundle/{}'
+  if "\n".s:done_bundles =~# "\\M\n".name."\n"
+    return ""
+  endif
+  let s:done_bundles .= name . "\n"
+  let list = []
+  for dir in pathogen#split(&rtp)
+    if dir =~# '\<after$'
+      if name =~# '{}$'
+        let list +=  filter(pathogen#glob_directories(substitute(dir,'after$',name[0:-3],'').'*[^~]'.sep.'after'), '!pathogen#is_disabled(v:val[0:-7])') + [dir]
+      else
+        let list += [dir, substitute(dir, 'after$', '', '') . name . sep . 'after']
+      endif
+    else
+      if name =~# '{}$'
+        let list +=  [dir] + filter(pathogen#glob_directories(dir.sep.name[0:-3].'*[^~]'), '!pathogen#is_disabled(v:val)')
+      else
+        let list += [dir . sep . name, dir]
+      endif
+    endif
+  endfor
+  let &rtp = pathogen#join(pathogen#uniq(list))
+  return 1
+endfunction " }}}1
+
+" Deprecated alias for pathogen#incubate().
+function! pathogen#runtime_append_all_bundles(...) abort " {{{1
+  if a:0
+    call s:warn('Change pathogen#runtime_append_all_bundles('.string(a:1).') to pathogen#incubate('.string(a:1.'/{}').')')
+  else
+    call s:warn('Change pathogen#runtime_append_all_bundles() to pathogen#incubate()')
+  endif
+  return call('pathogen#incubate', map(copy(a:000),'v:val . "/{}"'))
+endfunction
+
+let s:done_bundles = ''
+" }}}1
+
+" Invoke :helptags on all non-$VIM doc directories in runtimepath.
+function! pathogen#helptags() abort " {{{1
+  let sep = pathogen#separator()
+  for glob in pathogen#split(&rtp)
+    for dir in split(glob(glob), "\n")
+      if (dir.sep)[0 : strlen($VIMRUNTIME)] !=# $VIMRUNTIME.sep && filewritable(dir.sep.'doc') == 2 && !empty(filter(split(glob(dir.sep.'doc'.sep.'*'),"\n>"),'!isdirectory(v:val)')) && (!filereadable(dir.sep.'doc'.sep.'tags') || filewritable(dir.sep.'doc'.sep.'tags'))
+        helptags `=dir.'/doc'`
+      endif
+    endfor
+  endfor
+endfunction " }}}1
+
+command! -bar Helptags :call pathogen#helptags()
+
+" Execute the given command.  This is basically a backdoor for --remote-expr.
+function! pathogen#execute(...) abort " {{{1
+  for command in a:000
+    execute command
+  endfor
+  return ''
+endfunction " }}}1
+
+" Like findfile(), but hardcoded to use the runtimepath.
+function! pathogen#runtime_findfile(file,count) abort "{{{1
+  let rtp = pathogen#join(1,pathogen#split(&rtp))
+  let file = findfile(a:file,rtp,a:count)
+  if file ==# ''
+    return ''
+  else
+    return fnamemodify(file,':p')
+  endif
+endfunction " }}}1
+
+" Backport of fnameescape().
+function! pathogen#fnameescape(string) abort " {{{1
+  if exists('*fnameescape')
+    return fnameescape(a:string)
+  elseif a:string ==# '-'
+    return '\-'
+  else
+    return substitute(escape(a:string," \t\n*?[{`$\\%#'\"|!<"),'^[+>]','\\&','')
+  endif
+endfunction " }}}1
+
+if exists(':Vedit')
+  finish
+endif
+
+let s:vopen_warning = 0
+
+function! s:find(count,cmd,file,lcd) " {{{1
+  let rtp = pathogen#join(1,pathogen#split(&runtimepath))
+  let file = pathogen#runtime_findfile(a:file,a:count)
+  if file ==# ''
+    return "echoerr 'E345: Can''t find file \"".a:file."\" in runtimepath'"
+  endif
+  if !s:vopen_warning
+    let s:vopen_warning = 1
+    let warning = '|echohl WarningMsg|echo "Install scriptease.vim to continue using :V'.a:cmd.'"|echohl NONE'
+  else
+    let warning = ''
+  endif
+  if a:lcd
+    let path = file[0:-strlen(a:file)-2]
+    execute 'lcd `=path`'
+    return a:cmd.' '.pathogen#fnameescape(a:file) . warning
+  else
+    return a:cmd.' '.pathogen#fnameescape(file) . warning
+  endif
+endfunction " }}}1
+
+function! s:Findcomplete(A,L,P) " {{{1
+  let sep = pathogen#separator()
+  let cheats = {
+        \'a': 'autoload',
+        \'d': 'doc',
+        \'f': 'ftplugin',
+        \'i': 'indent',
+        \'p': 'plugin',
+        \'s': 'syntax'}
+  if a:A =~# '^\w[\\/]' && has_key(cheats,a:A[0])
+    let request = cheats[a:A[0]].a:A[1:-1]
+  else
+    let request = a:A
+  endif
+  let pattern = substitute(request,'/\|\'.sep,'*'.sep,'g').'*'
+  let found = {}
+  for path in pathogen#split(&runtimepath)
+    let path = expand(path, ':p')
+    let matches = split(glob(path.sep.pattern),"\n")
+    call map(matches,'isdirectory(v:val) ? v:val.sep : v:val')
+    call map(matches,'expand(v:val, ":p")[strlen(path)+1:-1]')
+    for match in matches
+      let found[match] = 1
+    endfor
+  endfor
+  return sort(keys(found))
+endfunction " }}}1
+
+command! -bar -bang -range=1 -nargs=1 -complete=customlist,s:Findcomplete Ve       :execute s:find(<count>,'edit<bang>',<q-args>,0)
+command! -bar -bang -range=1 -nargs=1 -complete=customlist,s:Findcomplete Vedit    :execute s:find(<count>,'edit<bang>',<q-args>,0)
+command! -bar -bang -range=1 -nargs=1 -complete=customlist,s:Findcomplete Vopen    :execute s:find(<count>,'edit<bang>',<q-args>,1)
+command! -bar -bang -range=1 -nargs=1 -complete=customlist,s:Findcomplete Vsplit   :execute s:find(<count>,'split',<q-args>,<bang>1)
+command! -bar -bang -range=1 -nargs=1 -complete=customlist,s:Findcomplete Vvsplit  :execute s:find(<count>,'vsplit',<q-args>,<bang>1)
+command! -bar -bang -range=1 -nargs=1 -complete=customlist,s:Findcomplete Vtabedit :execute s:find(<count>,'tabedit',<q-args>,<bang>1)
+command! -bar -bang -range=1 -nargs=1 -complete=customlist,s:Findcomplete Vpedit   :execute s:find(<count>,'pedit',<q-args>,<bang>1)
+command! -bar -bang -range=1 -nargs=1 -complete=customlist,s:Findcomplete Vread    :execute s:find(<count>,'read',<q-args>,<bang>1)
+
+" vim:set et sw=2:
diff --git a/vim/.vim/bundle/ctrlp.vim b/vim/.vim/bundle/ctrlp.vim
new file mode 160000
index 0000000..b5d3fe6
--- /dev/null
+++ b/vim/.vim/bundle/ctrlp.vim
@@ -0,0 +1 @@
+Subproject commit b5d3fe66a58a13d2ff8b6391f4387608496a030f
diff --git a/vim/.vim/bundle/julia-vim b/vim/.vim/bundle/julia-vim
new file mode 160000
index 0000000..84815ce
--- /dev/null
+++ b/vim/.vim/bundle/julia-vim
@@ -0,0 +1 @@
+Subproject commit 84815cec6c0c277297f2557d563550a0e7e25f5a
diff --git a/vim/.vim/bundle/molokai b/vim/.vim/bundle/molokai
new file mode 160000
index 0000000..db8ce13
--- /dev/null
+++ b/vim/.vim/bundle/molokai
@@ -0,0 +1 @@
+Subproject commit db8ce13b3737d3ddea8368498183d7c204a762eb
diff --git a/vim/.vim/bundle/nerdtree b/vim/.vim/bundle/nerdtree
new file mode 160000
index 0000000..bcf3de4
--- /dev/null
+++ b/vim/.vim/bundle/nerdtree
@@ -0,0 +1 @@
+Subproject commit bcf3de4fdffae45fc7c85b6b84a01b37177924aa
diff --git a/vim/.vim/bundle/pig.vim b/vim/.vim/bundle/pig.vim
new file mode 160000
index 0000000..4157cac
--- /dev/null
+++ b/vim/.vim/bundle/pig.vim
@@ -0,0 +1 @@
+Subproject commit 4157cac950c49ca6fb59f1dec2a41f2df90a92e1
diff --git a/vim/.vim/bundle/python-mode b/vim/.vim/bundle/python-mode
new file mode 160000
index 0000000..c6a872a
--- /dev/null
+++ b/vim/.vim/bundle/python-mode
@@ -0,0 +1 @@
+Subproject commit c6a872a64530979f4aac46d765c577581cb7fc36
diff --git a/vim/.vim/bundle/rainbow_parentheses.vim b/vim/.vim/bundle/rainbow_parentheses.vim
new file mode 160000
index 0000000..eb8baa5
--- /dev/null
+++ b/vim/.vim/bundle/rainbow_parentheses.vim
@@ -0,0 +1 @@
+Subproject commit eb8baa5428bde10ecc1cb14eed1d6e16f5f24695
diff --git a/vim/.vim/bundle/sessionman.vim b/vim/.vim/bundle/sessionman.vim
new file mode 160000
index 0000000..845d35b
--- /dev/null
+++ b/vim/.vim/bundle/sessionman.vim
@@ -0,0 +1 @@
+Subproject commit 845d35b84c5c51f631d8bfa4afe3edc126102ba9
diff --git a/vim/.vim/bundle/tagbar b/vim/.vim/bundle/tagbar
new file mode 160000
index 0000000..7b36c46
--- /dev/null
+++ b/vim/.vim/bundle/tagbar
@@ -0,0 +1 @@
+Subproject commit 7b36c46d17d57db34fdb0adac9ba6382d0bb5e66
diff --git a/vim/.vim/bundle/vim-fugitive b/vim/.vim/bundle/vim-fugitive
new file mode 160000
index 0000000..b319b69
--- /dev/null
+++ b/vim/.vim/bundle/vim-fugitive
@@ -0,0 +1 @@
+Subproject commit b319b694539017dcd789dc2c42f784a30d7b28b8
diff --git a/vim/.vim/bundle/vim-ipython b/vim/.vim/bundle/vim-ipython
new file mode 160000
index 0000000..42499f0
--- /dev/null
+++ b/vim/.vim/bundle/vim-ipython
@@ -0,0 +1 @@
+Subproject commit 42499f094b805b90b683afa5009cee99abd0bb75
diff --git a/vim/.vim/bundle/vim-surround b/vim/.vim/bundle/vim-surround
new file mode 160000
index 0000000..2d05440
--- /dev/null
+++ b/vim/.vim/bundle/vim-surround
@@ -0,0 +1 @@
+Subproject commit 2d05440ad23f97a7874ebd9b5de3a0e65d25d85c
diff --git a/vim/.vim/bundle/vimwiki b/vim/.vim/bundle/vimwiki
new file mode 160000
index 0000000..cb5c38a
--- /dev/null
+++ b/vim/.vim/bundle/vimwiki
@@ -0,0 +1 @@
+Subproject commit cb5c38a575bcdffa52747aef962dc9d61c7a8207
diff --git a/vim/.vimrc b/vim/.vimrc
new file mode 100644
index 0000000..11f9e42
--- /dev/null
+++ b/vim/.vimrc
@@ -0,0 +1,123 @@
+" basic plugin/ syntax support 
+execute pathogen#infect()
+filetype plugin indent on
+syntax on
+
+autocmd bufwritepost .vimrc source $MYVIMRC
+
+" theming
+set t_Co=256
+set background=dark
+colorscheme molokai
+set statusline=%<%f\ %h%m%r%{fugitive#statusline()}%=%-14.(%l,%c%V%)\ %P
+
+set nocompatible
+
+set wrap
+set textwidth=79
+set formatoptions=qrn1
+set colorcolumn=81
+
+set modelines=0
+set tabstop=4
+set shiftwidth=4
+set softtabstop=4
+set expandtab
+set encoding=utf-8
+set scrolloff=3
+set autoindent
+set showmode
+set showcmd
+set hidden
+set wildmenu
+set wildmode=list:longest
+set visualbell
+set cursorline
+set ttyfast
+set ruler
+set backspace=indent,eol,start
+set laststatus=2
+set relativenumber
+set undofile
+set autochdir
+
+set ignorecase
+set smartcase
+set gdefault
+set incsearch
+set showmatch
+set hlsearch
+
+set backup 
+set noswapfile 
+
+" backups
+set undodir=~/.vim/tmp/undo// 
+set backupdir=~/.vim/tmp/backup// 
+set directory=~/.vim/tmp/swap// 
+
+if !isdirectory(expand(&undodir))
+    call mkdir(expand(&undodir), "p")
+endif
+if !isdirectory(expand(&backupdir))
+    call mkdir(expand(&backupdir), "p")
+endif
+if !isdirectory(expand(&directory))
+    call mkdir(expand(&directory), "p")
+endif
+
+let mapleader = ","
+nnoremap <leader><space> :noh<cr>
+nnoremap <S-Tab> %
+nnoremap / /\v
+vnoremap / /\v
+nnoremap <up> <nop>
+nnoremap <down> <nop>
+nnoremap <left> <nop>
+nnoremap <right> <nop>
+inoremap <up> <nop>
+inoremap <down> <nop>
+inoremap <left> <nop>
+inoremap <right> <nop>
+nnoremap j gj
+nnoremap k gk
+nnoremap <F1> :NERDTreeToggle<cr>
+nnoremap <F2> :TagbarToggle<cr>
+nnoremap <F3> :RainbowParenthesesToggleAll<cr>
+nnoremap <c-b> :CtrlPBuffer<cr>
+noremap gV '[V']
+
+" allows for sequential indent/desindent by reselecting the text
+vnoremap < <gv
+vnoremap > >gv
+
+" easy window switching
+nnoremap <C-h> <C-w>h
+nnoremap <C-j> <C-w>j
+nnoremap <C-k> <C-w>k
+nnoremap <C-l> <C-w>l
+
+" window resizing
+nnoremap <C-left> <C-w><
+nnoremap <C-right> <C-w>>
+nnoremap <C-down> <C-w>+
+nnoremap <C-up> <C-w>-
+
+" text bubbling
+" vnoremap <C-up> xkP'[V']
+nnoremap <C-S-up> ddkP
+nnoremap <C-S-down> ddp
+" vnoremap <C-down> xp'[V']
+
+" folding
+set foldlevelstart=99
+nnoremap <Space> za
+nnoremap <S-Space> zA
+vnoremap <S-Space> zA
+
+let g:pymode_lint_write = 0
+let g:pymode_utils_whitespaces = 0
+
+autocmd CursorMovedI *  if pumvisible() == 0|silent! pclose|endif
+autocmd InsertLeave * if pumvisible() == 0|silent! pclose|endif
+autocmd FileType mail set fo+=aw spell
diff --git a/zsh/.oh-my-zsh b/zsh/.oh-my-zsh
new file mode 160000
index 0000000..192de6b
--- /dev/null
+++ b/zsh/.oh-my-zsh
@@ -0,0 +1 @@
+Subproject commit 192de6bcffb0294e19f4203f6f7dc1a7f3e427be
diff --git a/zsh/.zshrc b/zsh/.zshrc
new file mode 100644
index 0000000..a75baf7
--- /dev/null
+++ b/zsh/.zshrc
@@ -0,0 +1,55 @@
+# Path to your oh-my-zsh configuration.
+ZSH=$HOME/.oh-my-zsh
+
+# Set name of the theme to load.
+# Look in ~/.oh-my-zsh/themes/
+# Optionally, if you set this to "random", it'll load a random theme each
+# time that oh-my-zsh is loaded.
+ZSH_THEME="alanpeabody"
+
+# Example aliases
+# alias zshconfig="mate ~/.zshrc"
+# alias ohmyzsh="mate ~/.oh-my-zsh"
+
+# Set to this to use case-sensitive completion
+CASE_SENSITIVE="true"
+
+# Comment this out to disable weekly auto-update checks
+# DISABLE_AUTO_UPDATE="true"
+# Uncomment following line if you want to disable colors in ls
+# DISABLE_LS_COLORS="true"
+
+# Uncomment following line if you want to disable autosetting terminal title.
+# DISABLE_AUTO_TITLE="true"
+
+# Uncomment following line if you want red dots to be displayed while waiting for completion
+# COMPLETION_WAITING_DOTS="true"
+
+# Which plugins would you like to load? (plugins can be found in ~/.oh-my-zsh/plugins/*)
+# Custom plugins may be added to ~/.oh-my-zsh/custom/plugins/
+# Example format: plugins=(rails git textmate ruby lighthouse)
+plugins=(git archlinux python vi-mode)
+
+source $ZSH/oh-my-zsh.sh
+
+# Customize to your needs...
+unsetopt correct_all
+man() {
+    env \
+        LESS_TERMCAP_mb=$(printf "\e[1;31m") \
+        LESS_TERMCAP_md=$(printf "\e[1;31m") \
+        LESS_TERMCAP_me=$(printf "\e[0m") \
+        LESS_TERMCAP_se=$(printf "\e[0m") \
+        LESS_TERMCAP_so=$(printf "\e[1;44;33m") \
+        LESS_TERMCAP_ue=$(printf "\e[0m") \
+        LESS_TERMCAP_us=$(printf "\e[1;32m") \
+        man "$@"
+}
+
+if [ -f "${HOME}/.gpg-agent-info" ]; then
+  . "${HOME}/.gpg-agent-info"
+  export GPG_AGENT_INFO
+  export SSH_AUTH_SOCK
+fi
+
+bindkey '^R' history-incremental-search-backward
-- 
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