diff options
| author | Thibaut Horel <thibaut.horel@gmail.com> | 2015-09-14 23:08:02 -0400 |
|---|---|---|
| committer | Thibaut Horel <thibaut.horel@gmail.com> | 2015-09-14 23:08:02 -0400 |
| commit | ab0b1f3cefedb35327a19ec1b6afd560bfdf802d (patch) | |
| tree | b777f3e2c0ac0e712d8c5faab5107b1d236e2c3a /ic_experiments/ml3.c | |
| parent | 960676226862d2d68c7a9c04c56d4f8157803025 (diff) | |
| download | criminal_cascades-ab0b1f3cefedb35327a19ec1b6afd560bfdf802d.tar.gz | |
Import supplements and repo reorganization
Diffstat (limited to 'ic_experiments/ml3.c')
| -rw-r--r-- | ic_experiments/ml3.c | 7774 |
1 files changed, 7774 insertions, 0 deletions
diff --git a/ic_experiments/ml3.c b/ic_experiments/ml3.c new file mode 100644 index 0000000..7ad3edb --- /dev/null +++ b/ic_experiments/ml3.c @@ -0,0 +1,7774 @@ +/* Generated by Cython 0.22 */ + +/* BEGIN: Cython Metadata +{ + "distutils": { + "depends": [] + } +} +END: Cython Metadata */ + +#define PY_SSIZE_T_CLEAN +#ifndef CYTHON_USE_PYLONG_INTERNALS +#ifdef PYLONG_BITS_IN_DIGIT +#define CYTHON_USE_PYLONG_INTERNALS 0 +#else +#include "pyconfig.h" +#ifdef PYLONG_BITS_IN_DIGIT +#define CYTHON_USE_PYLONG_INTERNALS 1 +#else +#define CYTHON_USE_PYLONG_INTERNALS 0 +#endif +#endif +#endif +#include "Python.h" +#ifndef Py_PYTHON_H + #error Python headers needed to compile C extensions, please install development version of Python. +#elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03020000) + #error Cython requires Python 2.6+ or Python 3.2+. +#else +#define CYTHON_ABI "0_22" +#include <stddef.h> +#ifndef offsetof +#define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) +#endif +#if !defined(WIN32) && !defined(MS_WINDOWS) + #ifndef __stdcall + #define __stdcall + #endif + #ifndef __cdecl + #define __cdecl + #endif + #ifndef __fastcall + #define __fastcall + #endif +#endif +#ifndef DL_IMPORT + #define DL_IMPORT(t) t +#endif +#ifndef DL_EXPORT + #define DL_EXPORT(t) t +#endif +#ifndef PY_LONG_LONG + #define PY_LONG_LONG LONG_LONG +#endif +#ifndef Py_HUGE_VAL + #define Py_HUGE_VAL HUGE_VAL +#endif +#ifdef PYPY_VERSION +#define CYTHON_COMPILING_IN_PYPY 1 +#define CYTHON_COMPILING_IN_CPYTHON 0 +#else +#define CYTHON_COMPILING_IN_PYPY 0 +#define CYTHON_COMPILING_IN_CPYTHON 1 +#endif +#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 && !defined(Py_OptimizeFlag) +#define Py_OptimizeFlag 0 +#endif +#define __PYX_BUILD_PY_SSIZE_T "n" +#define CYTHON_FORMAT_SSIZE_T "z" +#if PY_MAJOR_VERSION < 3 + #define __Pyx_BUILTIN_MODULE_NAME "__builtin__" + #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \ + PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) + #define __Pyx_DefaultClassType PyClass_Type +#else + #define __Pyx_BUILTIN_MODULE_NAME "builtins" + #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \ + PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) + #define __Pyx_DefaultClassType PyType_Type +#endif +#if PY_MAJOR_VERSION >= 3 + #define Py_TPFLAGS_CHECKTYPES 0 + #define Py_TPFLAGS_HAVE_INDEX 0 + #define Py_TPFLAGS_HAVE_NEWBUFFER 0 +#endif +#if PY_VERSION_HEX < 0x030400a1 && !defined(Py_TPFLAGS_HAVE_FINALIZE) + #define Py_TPFLAGS_HAVE_FINALIZE 0 +#endif +#if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND) + #define CYTHON_PEP393_ENABLED 1 + #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ? \ + 0 : _PyUnicode_Ready((PyObject *)(op))) + #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u) + #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i) + #define __Pyx_PyUnicode_KIND(u) PyUnicode_KIND(u) + #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u) + #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i) +#else + #define CYTHON_PEP393_ENABLED 0 + #define __Pyx_PyUnicode_READY(op) (0) + #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u) + #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i])) + #define __Pyx_PyUnicode_KIND(u) (sizeof(Py_UNICODE)) + #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u)) + #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i])) +#endif +#if CYTHON_COMPILING_IN_PYPY + #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b) + #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b) + #define __Pyx_PyFrozenSet_Size(s) PyObject_Size(s) +#else + #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b) + #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ? \ + PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b)) + #define __Pyx_PyFrozenSet_Size(s) PySet_Size(s) +#endif +#define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b)) +#define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b)) +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyString_Format(a, b) PyUnicode_Format(a, b) +#else + #define __Pyx_PyString_Format(a, b) PyString_Format(a, b) +#endif +#if PY_MAJOR_VERSION >= 3 + #define PyBaseString_Type PyUnicode_Type + #define PyStringObject PyUnicodeObject + #define PyString_Type PyUnicode_Type + #define PyString_Check PyUnicode_Check + #define PyString_CheckExact PyUnicode_CheckExact +#endif +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj) + #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj) +#else + #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj)) + #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj)) +#endif +#ifndef PySet_CheckExact + #define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type) +#endif +#define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type) +#if PY_MAJOR_VERSION >= 3 + #define PyIntObject PyLongObject + #define PyInt_Type PyLong_Type + #define PyInt_Check(op) PyLong_Check(op) + #define PyInt_CheckExact(op) PyLong_CheckExact(op) + #define PyInt_FromString PyLong_FromString + #define PyInt_FromUnicode PyLong_FromUnicode + #define PyInt_FromLong PyLong_FromLong + #define PyInt_FromSize_t PyLong_FromSize_t + #define PyInt_FromSsize_t PyLong_FromSsize_t + #define PyInt_AsLong PyLong_AsLong + #define PyInt_AS_LONG PyLong_AS_LONG + #define PyInt_AsSsize_t PyLong_AsSsize_t + #define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask + #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask + #define PyNumber_Int PyNumber_Long +#endif +#if PY_MAJOR_VERSION >= 3 + #define PyBoolObject PyLongObject +#endif +#if PY_MAJOR_VERSION >= 3 && CYTHON_COMPILING_IN_PYPY + #ifndef PyUnicode_InternFromString + #define PyUnicode_InternFromString(s) PyUnicode_FromString(s) + #endif +#endif +#if PY_VERSION_HEX < 0x030200A4 + typedef long Py_hash_t; + #define __Pyx_PyInt_FromHash_t PyInt_FromLong + #define __Pyx_PyInt_AsHash_t PyInt_AsLong +#else + #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t + #define __Pyx_PyInt_AsHash_t PyInt_AsSsize_t +#endif +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : PyInstanceMethod_New(func)) +#else + #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass) +#endif +#ifndef CYTHON_INLINE + #if defined(__GNUC__) + #define CYTHON_INLINE __inline__ + #elif defined(_MSC_VER) + #define CYTHON_INLINE __inline + #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define CYTHON_INLINE inline + #else + #define CYTHON_INLINE + #endif +#endif +#ifndef CYTHON_RESTRICT + #if defined(__GNUC__) + #define CYTHON_RESTRICT __restrict__ + #elif defined(_MSC_VER) && _MSC_VER >= 1400 + #define CYTHON_RESTRICT __restrict + #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define CYTHON_RESTRICT restrict + #else + #define CYTHON_RESTRICT + #endif +#endif +#ifdef NAN +#define __PYX_NAN() ((float) NAN) +#else +static CYTHON_INLINE float __PYX_NAN() { + /* Initialize NaN. The sign is irrelevant, an exponent with all bits 1 and + a nonzero mantissa means NaN. If the first bit in the mantissa is 1, it is + a quiet NaN. */ + float value; + memset(&value, 0xFF, sizeof(value)); + return value; +} +#endif +#define __Pyx_void_to_None(void_result) (void_result, Py_INCREF(Py_None), Py_None) +#ifdef __cplusplus +template<typename T> +void __Pyx_call_destructor(T* x) { + x->~T(); +} +template<typename T> +class __Pyx_FakeReference { + public: + __Pyx_FakeReference() : ptr(NULL) { } + __Pyx_FakeReference(T& ref) : ptr(&ref) { } + T *operator->() { return ptr; } + operator T&() { return *ptr; } + private: + T *ptr; +}; +#endif + + +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) + #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) +#else + #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y) + #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y) +#endif + +#ifndef __PYX_EXTERN_C + #ifdef __cplusplus + #define __PYX_EXTERN_C extern "C" + #else + #define __PYX_EXTERN_C extern + #endif +#endif + +#if defined(WIN32) || defined(MS_WINDOWS) +#define _USE_MATH_DEFINES +#endif +#include <math.h> +#define __PYX_HAVE__ml3 +#define __PYX_HAVE_API__ml3 +#include "string.h" +#include "stdio.h" +#include "stdlib.h" +#include "numpy/arrayobject.h" +#include "numpy/ufuncobject.h" +#include "math.h" +#ifdef _OPENMP +#include <omp.h> +#endif /* _OPENMP */ + +#ifdef PYREX_WITHOUT_ASSERTIONS +#define CYTHON_WITHOUT_ASSERTIONS +#endif + +#ifndef CYTHON_UNUSED +# if defined(__GNUC__) +# if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) +# define CYTHON_UNUSED __attribute__ ((__unused__)) +# else +# define CYTHON_UNUSED +# endif +# elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) +# define CYTHON_UNUSED __attribute__ ((__unused__)) +# else +# define CYTHON_UNUSED +# endif +#endif +typedef struct {PyObject **p; char *s; const Py_ssize_t n; const char* encoding; + const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; + +#define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0 +#define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT 0 +#define __PYX_DEFAULT_STRING_ENCODING "" +#define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString +#define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize +#define __Pyx_fits_Py_ssize_t(v, type, is_signed) ( \ + (sizeof(type) < sizeof(Py_ssize_t)) || \ + (sizeof(type) > sizeof(Py_ssize_t) && \ + likely(v < (type)PY_SSIZE_T_MAX || \ + v == (type)PY_SSIZE_T_MAX) && \ + (!is_signed || likely(v > (type)PY_SSIZE_T_MIN || \ + v == (type)PY_SSIZE_T_MIN))) || \ + (sizeof(type) == sizeof(Py_ssize_t) && \ + (is_signed || likely(v < (type)PY_SSIZE_T_MAX || \ + v == (type)PY_SSIZE_T_MAX))) ) +static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject*); +static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); +#define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s)) +#define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) +#define __Pyx_PyBytes_FromString PyBytes_FromString +#define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize +static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); +#if PY_MAJOR_VERSION < 3 + #define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString + #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize +#else + #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString + #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize +#endif +#define __Pyx_PyObject_AsSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s) +#define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s) +#define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s) +#define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s) +#define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s) +#if PY_MAJOR_VERSION < 3 +static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) +{ + const Py_UNICODE *u_end = u; + while (*u_end++) ; + return (size_t)(u_end - u - 1); +} +#else +#define __Pyx_Py_UNICODE_strlen Py_UNICODE_strlen +#endif +#define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u)) +#define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode +#define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode +#define __Pyx_Owned_Py_None(b) (Py_INCREF(Py_None), Py_None) +#define __Pyx_PyBool_FromLong(b) ((b) ? (Py_INCREF(Py_True), Py_True) : (Py_INCREF(Py_False), Py_False)) +static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*); +static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x); +static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*); +static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t); +#if CYTHON_COMPILING_IN_CPYTHON +#define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x)) +#else +#define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x) +#endif +#define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x)) +#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII +static int __Pyx_sys_getdefaultencoding_not_ascii; +static int __Pyx_init_sys_getdefaultencoding_params(void) { + PyObject* sys; + PyObject* default_encoding = NULL; + PyObject* ascii_chars_u = NULL; + PyObject* ascii_chars_b = NULL; + const char* default_encoding_c; + sys = PyImport_ImportModule("sys"); + if (!sys) goto bad; + default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL); + Py_DECREF(sys); + if (!default_encoding) goto bad; + default_encoding_c = PyBytes_AsString(default_encoding); + if (!default_encoding_c) goto bad; + if (strcmp(default_encoding_c, "ascii") == 0) { + __Pyx_sys_getdefaultencoding_not_ascii = 0; + } else { + char ascii_chars[128]; + int c; + for (c = 0; c < 128; c++) { + ascii_chars[c] = c; + } + __Pyx_sys_getdefaultencoding_not_ascii = 1; + ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL); + if (!ascii_chars_u) goto bad; + ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL); + if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) { + PyErr_Format( + PyExc_ValueError, + "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.", + default_encoding_c); + goto bad; + } + Py_DECREF(ascii_chars_u); + Py_DECREF(ascii_chars_b); + } + Py_DECREF(default_encoding); + return 0; +bad: + Py_XDECREF(default_encoding); + Py_XDECREF(ascii_chars_u); + Py_XDECREF(ascii_chars_b); + return -1; +} +#endif +#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3 +#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL) +#else +#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL) +#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT +static char* __PYX_DEFAULT_STRING_ENCODING; +static int __Pyx_init_sys_getdefaultencoding_params(void) { + PyObject* sys; + PyObject* default_encoding = NULL; + char* default_encoding_c; + sys = PyImport_ImportModule("sys"); + if (!sys) goto bad; + default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); + Py_DECREF(sys); + if (!default_encoding) goto bad; + default_encoding_c = PyBytes_AsString(default_encoding); + if (!default_encoding_c) goto bad; + __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c)); + if (!__PYX_DEFAULT_STRING_ENCODING) goto bad; + strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c); + Py_DECREF(default_encoding); + return 0; +bad: + Py_XDECREF(default_encoding); + return -1; +} +#endif +#endif + + +/* Test for GCC > 2.95 */ +#if defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95))) + #define likely(x) __builtin_expect(!!(x), 1) + #define unlikely(x) __builtin_expect(!!(x), 0) +#else /* !__GNUC__ or GCC < 2.95 */ + #define likely(x) (x) + #define unlikely(x) (x) +#endif /* __GNUC__ */ + +static PyObject *__pyx_m; +static PyObject *__pyx_d; +static PyObject *__pyx_b; +static PyObject *__pyx_empty_tuple; +static PyObject *__pyx_empty_bytes; +static int __pyx_lineno; +static int __pyx_clineno = 0; +static const char * __pyx_cfilenm= __FILE__; +static const char *__pyx_filename; + +#if !defined(CYTHON_CCOMPLEX) + #if defined(__cplusplus) + #define CYTHON_CCOMPLEX 1 + #elif defined(_Complex_I) + #define CYTHON_CCOMPLEX 1 + #else + #define CYTHON_CCOMPLEX 0 + #endif +#endif +#if CYTHON_CCOMPLEX + #ifdef __cplusplus + #include <complex> + #else + #include <complex.h> + #endif +#endif +#if CYTHON_CCOMPLEX && !defined(__cplusplus) && defined(__sun__) && defined(__GNUC__) + #undef _Complex_I + #define _Complex_I 1.0fj +#endif + + +static const char *__pyx_f[] = { + "ml3.pyx", + "__init__.pxd", + "type.pxd", +}; +#define IS_UNSIGNED(type) (((type) -1) > 0) +struct __Pyx_StructField_; +#define __PYX_BUF_FLAGS_PACKED_STRUCT (1 << 0) +typedef struct { + const char* name; + struct __Pyx_StructField_* fields; + size_t size; + size_t arraysize[8]; + int ndim; + char typegroup; + char is_unsigned; + int flags; +} __Pyx_TypeInfo; +typedef struct __Pyx_StructField_ { + __Pyx_TypeInfo* type; + const char* name; + size_t offset; +} __Pyx_StructField; +typedef struct { + __Pyx_StructField* field; + size_t parent_offset; +} __Pyx_BufFmt_StackElem; +typedef struct { + __Pyx_StructField root; + __Pyx_BufFmt_StackElem* head; + size_t fmt_offset; + size_t new_count, enc_count; + size_t struct_alignment; + int is_complex; + char enc_type; + char new_packmode; + char enc_packmode; + char is_valid_array; +} __Pyx_BufFmt_Context; + + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":726 + * # in Cython to enable them only on the right systems. + * + * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<< + * ctypedef npy_int16 int16_t + * ctypedef npy_int32 int32_t + */ +typedef npy_int8 __pyx_t_5numpy_int8_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":727 + * + * ctypedef npy_int8 int8_t + * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<< + * ctypedef npy_int32 int32_t + * ctypedef npy_int64 int64_t + */ +typedef npy_int16 __pyx_t_5numpy_int16_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":728 + * ctypedef npy_int8 int8_t + * ctypedef npy_int16 int16_t + * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<< + * ctypedef npy_int64 int64_t + * #ctypedef npy_int96 int96_t + */ +typedef npy_int32 __pyx_t_5numpy_int32_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":729 + * ctypedef npy_int16 int16_t + * ctypedef npy_int32 int32_t + * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<< + * #ctypedef npy_int96 int96_t + * #ctypedef npy_int128 int128_t + */ +typedef npy_int64 __pyx_t_5numpy_int64_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":733 + * #ctypedef npy_int128 int128_t + * + * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<< + * ctypedef npy_uint16 uint16_t + * ctypedef npy_uint32 uint32_t + */ +typedef npy_uint8 __pyx_t_5numpy_uint8_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":734 + * + * ctypedef npy_uint8 uint8_t + * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<< + * ctypedef npy_uint32 uint32_t + * ctypedef npy_uint64 uint64_t + */ +typedef npy_uint16 __pyx_t_5numpy_uint16_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":735 + * ctypedef npy_uint8 uint8_t + * ctypedef npy_uint16 uint16_t + * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<< + * ctypedef npy_uint64 uint64_t + * #ctypedef npy_uint96 uint96_t + */ +typedef npy_uint32 __pyx_t_5numpy_uint32_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":736 + * ctypedef npy_uint16 uint16_t + * ctypedef npy_uint32 uint32_t + * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<< + * #ctypedef npy_uint96 uint96_t + * #ctypedef npy_uint128 uint128_t + */ +typedef npy_uint64 __pyx_t_5numpy_uint64_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":740 + * #ctypedef npy_uint128 uint128_t + * + * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<< + * ctypedef npy_float64 float64_t + * #ctypedef npy_float80 float80_t + */ +typedef npy_float32 __pyx_t_5numpy_float32_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":741 + * + * ctypedef npy_float32 float32_t + * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<< + * #ctypedef npy_float80 float80_t + * #ctypedef npy_float128 float128_t + */ +typedef npy_float64 __pyx_t_5numpy_float64_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":750 + * # The int types are mapped a bit surprising -- + * # numpy.int corresponds to 'l' and numpy.long to 'q' + * ctypedef npy_long int_t # <<<<<<<<<<<<<< + * ctypedef npy_longlong long_t + * ctypedef npy_longlong longlong_t + */ +typedef npy_long __pyx_t_5numpy_int_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":751 + * # numpy.int corresponds to 'l' and numpy.long to 'q' + * ctypedef npy_long int_t + * ctypedef npy_longlong long_t # <<<<<<<<<<<<<< + * ctypedef npy_longlong longlong_t + * + */ +typedef npy_longlong __pyx_t_5numpy_long_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":752 + * ctypedef npy_long int_t + * ctypedef npy_longlong long_t + * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<< + * + * ctypedef npy_ulong uint_t + */ +typedef npy_longlong __pyx_t_5numpy_longlong_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":754 + * ctypedef npy_longlong longlong_t + * + * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<< + * ctypedef npy_ulonglong ulong_t + * ctypedef npy_ulonglong ulonglong_t + */ +typedef npy_ulong __pyx_t_5numpy_uint_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":755 + * + * ctypedef npy_ulong uint_t + * ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<< + * ctypedef npy_ulonglong ulonglong_t + * + */ +typedef npy_ulonglong __pyx_t_5numpy_ulong_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":756 + * ctypedef npy_ulong uint_t + * ctypedef npy_ulonglong ulong_t + * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<< + * + * ctypedef npy_intp intp_t + */ +typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":758 + * ctypedef npy_ulonglong ulonglong_t + * + * ctypedef npy_intp intp_t # <<<<<<<<<<<<<< + * ctypedef npy_uintp uintp_t + * + */ +typedef npy_intp __pyx_t_5numpy_intp_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":759 + * + * ctypedef npy_intp intp_t + * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<< + * + * ctypedef npy_double float_t + */ +typedef npy_uintp __pyx_t_5numpy_uintp_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":761 + * ctypedef npy_uintp uintp_t + * + * ctypedef npy_double float_t # <<<<<<<<<<<<<< + * ctypedef npy_double double_t + * ctypedef npy_longdouble longdouble_t + */ +typedef npy_double __pyx_t_5numpy_float_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":762 + * + * ctypedef npy_double float_t + * ctypedef npy_double double_t # <<<<<<<<<<<<<< + * ctypedef npy_longdouble longdouble_t + * + */ +typedef npy_double __pyx_t_5numpy_double_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":763 + * ctypedef npy_double float_t + * ctypedef npy_double double_t + * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<< + * + * ctypedef npy_cfloat cfloat_t + */ +typedef npy_longdouble __pyx_t_5numpy_longdouble_t; + +/* "ml3.pyx":7 + * + * DTYPE = np.float64 + * ctypedef np.float_t DTYPE_t # <<<<<<<<<<<<<< + * + * cdef DTYPE_t weight_success(int dist, int dt, DTYPE_t alpha, DTYPE_t delta, + */ +typedef __pyx_t_5numpy_float_t __pyx_t_3ml3_DTYPE_t; +#if CYTHON_CCOMPLEX + #ifdef __cplusplus + typedef ::std::complex< float > __pyx_t_float_complex; + #else + typedef float _Complex __pyx_t_float_complex; + #endif +#else + typedef struct { float real, imag; } __pyx_t_float_complex; +#endif + +#if CYTHON_CCOMPLEX + #ifdef __cplusplus + typedef ::std::complex< double > __pyx_t_double_complex; + #else + typedef double _Complex __pyx_t_double_complex; + #endif +#else + typedef struct { double real, imag; } __pyx_t_double_complex; +#endif + + +/*--- Type declarations ---*/ + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":765 + * ctypedef npy_longdouble longdouble_t + * + * ctypedef npy_cfloat cfloat_t # <<<<<<<<<<<<<< + * ctypedef npy_cdouble cdouble_t + * ctypedef npy_clongdouble clongdouble_t + */ +typedef npy_cfloat __pyx_t_5numpy_cfloat_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":766 + * + * ctypedef npy_cfloat cfloat_t + * ctypedef npy_cdouble cdouble_t # <<<<<<<<<<<<<< + * ctypedef npy_clongdouble clongdouble_t + * + */ +typedef npy_cdouble __pyx_t_5numpy_cdouble_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":767 + * ctypedef npy_cfloat cfloat_t + * ctypedef npy_cdouble cdouble_t + * ctypedef npy_clongdouble clongdouble_t # <<<<<<<<<<<<<< + * + * ctypedef npy_cdouble complex_t + */ +typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t; + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":769 + * ctypedef npy_clongdouble clongdouble_t + * + * ctypedef npy_cdouble complex_t # <<<<<<<<<<<<<< + * + * cdef inline object PyArray_MultiIterNew1(a): + */ +typedef npy_cdouble __pyx_t_5numpy_complex_t; + +/* --- Runtime support code (head) --- */ +#ifndef CYTHON_REFNANNY + #define CYTHON_REFNANNY 0 +#endif +#if CYTHON_REFNANNY + typedef struct { + void (*INCREF)(void*, PyObject*, int); + void (*DECREF)(void*, PyObject*, int); + void (*GOTREF)(void*, PyObject*, int); + void (*GIVEREF)(void*, PyObject*, int); + void* (*SetupContext)(const char*, int, const char*); + void (*FinishContext)(void**); + } __Pyx_RefNannyAPIStruct; + static __Pyx_RefNannyAPIStruct *__Pyx_RefNanny = NULL; + static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname); + #define __Pyx_RefNannyDeclarations void *__pyx_refnanny = NULL; +#ifdef WITH_THREAD + #define __Pyx_RefNannySetupContext(name, acquire_gil) \ + if (acquire_gil) { \ + PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure(); \ + __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__); \ + PyGILState_Release(__pyx_gilstate_save); \ + } else { \ + __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__); \ + } +#else + #define __Pyx_RefNannySetupContext(name, acquire_gil) \ + __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__) +#endif + #define __Pyx_RefNannyFinishContext() \ + __Pyx_RefNanny->FinishContext(&__pyx_refnanny) + #define __Pyx_INCREF(r) __Pyx_RefNanny->INCREF(__pyx_refnanny, (PyObject *)(r), __LINE__) + #define __Pyx_DECREF(r) __Pyx_RefNanny->DECREF(__pyx_refnanny, (PyObject *)(r), __LINE__) + #define __Pyx_GOTREF(r) __Pyx_RefNanny->GOTREF(__pyx_refnanny, (PyObject *)(r), __LINE__) + #define __Pyx_GIVEREF(r) __Pyx_RefNanny->GIVEREF(__pyx_refnanny, (PyObject *)(r), __LINE__) + #define __Pyx_XINCREF(r) do { if((r) != NULL) {__Pyx_INCREF(r); }} while(0) + #define __Pyx_XDECREF(r) do { if((r) != NULL) {__Pyx_DECREF(r); }} while(0) + #define __Pyx_XGOTREF(r) do { if((r) != NULL) {__Pyx_GOTREF(r); }} while(0) + #define __Pyx_XGIVEREF(r) do { if((r) != NULL) {__Pyx_GIVEREF(r);}} while(0) +#else + #define __Pyx_RefNannyDeclarations + #define __Pyx_RefNannySetupContext(name, acquire_gil) + #define __Pyx_RefNannyFinishContext() + #define __Pyx_INCREF(r) Py_INCREF(r) + #define __Pyx_DECREF(r) Py_DECREF(r) + #define __Pyx_GOTREF(r) + #define __Pyx_GIVEREF(r) + #define __Pyx_XINCREF(r) Py_XINCREF(r) + #define __Pyx_XDECREF(r) Py_XDECREF(r) + #define __Pyx_XGOTREF(r) + #define __Pyx_XGIVEREF(r) +#endif +#define __Pyx_XDECREF_SET(r, v) do { \ + PyObject *tmp = (PyObject *) r; \ + r = v; __Pyx_XDECREF(tmp); \ + } while (0) +#define __Pyx_DECREF_SET(r, v) do { \ + PyObject *tmp = (PyObject *) r; \ + r = v; __Pyx_DECREF(tmp); \ + } while (0) +#define __Pyx_CLEAR(r) do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0) +#define __Pyx_XCLEAR(r) do { if((r) != NULL) {PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);}} while(0) + +#if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) { + PyTypeObject* tp = Py_TYPE(obj); + if (likely(tp->tp_getattro)) + return tp->tp_getattro(obj, attr_name); +#if PY_MAJOR_VERSION < 3 + if (likely(tp->tp_getattr)) + return tp->tp_getattr(obj, PyString_AS_STRING(attr_name)); +#endif + return PyObject_GetAttr(obj, attr_name); +} +#else +#define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n) +#endif + +static PyObject *__Pyx_GetBuiltinName(PyObject *name); + +static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact, + Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); + +static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name); + +static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[], \ + PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, \ + const char* function_name); + +static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, + const char *name, int exact); + +static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name); + +#if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw); +#else +#define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw) +#endif + +static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); + +static CYTHON_INLINE int __Pyx_GetBufferAndValidate(Py_buffer* buf, PyObject* obj, + __Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack); +static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info); + +static CYTHON_INLINE int __Pyx_IterFinish(void); + +#if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg); +#endif + +#if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func); +#else +#define __Pyx_PyObject_CallNoArg(func) __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL) +#endif + +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg); + +static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name); + +static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index); + +static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); + +static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected); + +static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void); + +static void __Pyx_UnpackTupleError(PyObject *, Py_ssize_t index); + +static CYTHON_INLINE int __Pyx_unpack_tuple2(PyObject* tuple, PyObject** value1, PyObject** value2, + int is_tuple, int has_known_size, int decref_tuple); + +static CYTHON_INLINE PyObject* __Pyx_dict_iterator(PyObject* dict, int is_dict, PyObject* method_name, + Py_ssize_t* p_orig_length, int* p_is_dict); +static CYTHON_INLINE int __Pyx_dict_iter_next(PyObject* dict_or_iter, Py_ssize_t orig_length, Py_ssize_t* ppos, + PyObject** pkey, PyObject** pvalue, PyObject** pitem, int is_dict); + +#if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) { + PyListObject* L = (PyListObject*) list; + Py_ssize_t len = Py_SIZE(list); + if (likely(L->allocated > len)) { + Py_INCREF(x); + PyList_SET_ITEM(list, len, x); + Py_SIZE(list) = len+1; + return 0; + } + return PyList_Append(list, x); +} +#else +#define __Pyx_ListComp_Append(L,x) PyList_Append(L,x) +#endif + +#define __Pyx_BufPtrStrided1d(type, buf, i0, s0) (type)((char*)buf + i0 * s0) +static double __Pyx__PyObject_AsDouble(PyObject* obj); +#if CYTHON_COMPILING_IN_PYPY +#define __Pyx_PyObject_AsDouble(obj) \ +(likely(PyFloat_CheckExact(obj)) ? PyFloat_AS_DOUBLE(obj) : \ + likely(PyInt_CheckExact(obj)) ? \ + PyFloat_AsDouble(obj) : __Pyx__PyObject_AsDouble(obj)) +#else +#define __Pyx_PyObject_AsDouble(obj) \ +((likely(PyFloat_CheckExact(obj))) ? \ + PyFloat_AS_DOUBLE(obj) : __Pyx__PyObject_AsDouble(obj)) +#endif + +#define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \ + __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) : \ + (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) : \ + __Pyx_GetItemInt_Generic(o, to_py_func(i)))) +#define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \ + __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) : \ + (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL)) +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, + int wraparound, int boundscheck); +#define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \ + __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) : \ + (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL)) +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, + int wraparound, int boundscheck); +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j); +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, + int is_list, int wraparound, int boundscheck); + +static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb); +static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb); + +static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); + +#if PY_MAJOR_VERSION >= 3 +static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) { + PyObject *value; + value = PyDict_GetItemWithError(d, key); + if (unlikely(!value)) { + if (!PyErr_Occurred()) { + PyObject* args = PyTuple_Pack(1, key); + if (likely(args)) + PyErr_SetObject(PyExc_KeyError, args); + Py_XDECREF(args); + } + return NULL; + } + Py_INCREF(value); + return value; +} +#else + #define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key) +#endif + +typedef struct { + int code_line; + PyCodeObject* code_object; +} __Pyx_CodeObjectCacheEntry; +struct __Pyx_CodeObjectCache { + int count; + int max_count; + __Pyx_CodeObjectCacheEntry* entries; +}; +static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL}; +static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line); +static PyCodeObject *__pyx_find_code_object(int code_line); +static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object); + +static void __Pyx_AddTraceback(const char *funcname, int c_line, + int py_line, const char *filename); + +typedef struct { + Py_ssize_t shape, strides, suboffsets; +} __Pyx_Buf_DimInfo; +typedef struct { + size_t refcount; + Py_buffer pybuffer; +} __Pyx_Buffer; +typedef struct { + __Pyx_Buffer *rcbuffer; + char *data; + __Pyx_Buf_DimInfo diminfo[8]; +} __Pyx_LocalBuf_ND; + +#if PY_MAJOR_VERSION < 3 + static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags); + static void __Pyx_ReleaseBuffer(Py_buffer *view); +#else + #define __Pyx_GetBuffer PyObject_GetBuffer + #define __Pyx_ReleaseBuffer PyBuffer_Release +#endif + + +static Py_ssize_t __Pyx_zeros[] = {0, 0, 0, 0, 0, 0, 0, 0}; +static Py_ssize_t __Pyx_minusones[] = {-1, -1, -1, -1, -1, -1, -1, -1}; + +static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); + +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value); + +static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); + +#if CYTHON_CCOMPLEX + #ifdef __cplusplus + #define __Pyx_CREAL(z) ((z).real()) + #define __Pyx_CIMAG(z) ((z).imag()) + #else + #define __Pyx_CREAL(z) (__real__(z)) + #define __Pyx_CIMAG(z) (__imag__(z)) + #endif +#else + #define __Pyx_CREAL(z) ((z).real) + #define __Pyx_CIMAG(z) ((z).imag) +#endif +#if (defined(_WIN32) || defined(__clang__)) && defined(__cplusplus) && CYTHON_CCOMPLEX + #define __Pyx_SET_CREAL(z,x) ((z).real(x)) + #define __Pyx_SET_CIMAG(z,y) ((z).imag(y)) +#else + #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x) + #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y) +#endif + +static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float, float); + +#if CYTHON_CCOMPLEX + #define __Pyx_c_eqf(a, b) ((a)==(b)) + #define __Pyx_c_sumf(a, b) ((a)+(b)) + #define __Pyx_c_difff(a, b) ((a)-(b)) + #define __Pyx_c_prodf(a, b) ((a)*(b)) + #define __Pyx_c_quotf(a, b) ((a)/(b)) + #define __Pyx_c_negf(a) (-(a)) + #ifdef __cplusplus + #define __Pyx_c_is_zerof(z) ((z)==(float)0) + #define __Pyx_c_conjf(z) (::std::conj(z)) + #if 1 + #define __Pyx_c_absf(z) (::std::abs(z)) + #define __Pyx_c_powf(a, b) (::std::pow(a, b)) + #endif + #else + #define __Pyx_c_is_zerof(z) ((z)==0) + #define __Pyx_c_conjf(z) (conjf(z)) + #if 1 + #define __Pyx_c_absf(z) (cabsf(z)) + #define __Pyx_c_powf(a, b) (cpowf(a, b)) + #endif + #endif +#else + static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex); + static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex); + #if 1 + static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex, __pyx_t_float_complex); + #endif +#endif + +static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double, double); + +#if CYTHON_CCOMPLEX + #define __Pyx_c_eq(a, b) ((a)==(b)) + #define __Pyx_c_sum(a, b) ((a)+(b)) + #define __Pyx_c_diff(a, b) ((a)-(b)) + #define __Pyx_c_prod(a, b) ((a)*(b)) + #define __Pyx_c_quot(a, b) ((a)/(b)) + #define __Pyx_c_neg(a) (-(a)) + #ifdef __cplusplus + #define __Pyx_c_is_zero(z) ((z)==(double)0) + #define __Pyx_c_conj(z) (::std::conj(z)) + #if 1 + #define __Pyx_c_abs(z) (::std::abs(z)) + #define __Pyx_c_pow(a, b) (::std::pow(a, b)) + #endif + #else + #define __Pyx_c_is_zero(z) ((z)==0) + #define __Pyx_c_conj(z) (conj(z)) + #if 1 + #define __Pyx_c_abs(z) (cabs(z)) + #define __Pyx_c_pow(a, b) (cpow(a, b)) + #endif + #endif +#else + static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex); + static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex); + #if 1 + static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex, __pyx_t_double_complex); + #endif +#endif + +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); + +static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); + +static int __Pyx_check_binary_version(void); + +#if !defined(__Pyx_PyIdentifier_FromString) +#if PY_MAJOR_VERSION < 3 + #define __Pyx_PyIdentifier_FromString(s) PyString_FromString(s) +#else + #define __Pyx_PyIdentifier_FromString(s) PyUnicode_FromString(s) +#endif +#endif + +static PyObject *__Pyx_ImportModule(const char *name); + +static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict); + +static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); + + +/* Module declarations from 'cpython.buffer' */ + +/* Module declarations from 'cpython.ref' */ + +/* Module declarations from 'libc.string' */ + +/* Module declarations from 'libc.stdio' */ + +/* Module declarations from 'cpython.object' */ + +/* Module declarations from '__builtin__' */ + +/* Module declarations from 'cpython.type' */ +static PyTypeObject *__pyx_ptype_7cpython_4type_type = 0; + +/* Module declarations from 'libc.stdlib' */ + +/* Module declarations from 'numpy' */ + +/* Module declarations from 'numpy' */ +static PyTypeObject *__pyx_ptype_5numpy_dtype = 0; +static PyTypeObject *__pyx_ptype_5numpy_flatiter = 0; +static PyTypeObject *__pyx_ptype_5numpy_broadcast = 0; +static PyTypeObject *__pyx_ptype_5numpy_ndarray = 0; +static PyTypeObject *__pyx_ptype_5numpy_ufunc = 0; +static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, char *, char *, int *); /*proto*/ + +/* Module declarations from 'libc.math' */ + +/* Module declarations from 'ml3' */ +static __pyx_t_3ml3_DTYPE_t __pyx_f_3ml3_weight_success(int, int, __pyx_t_3ml3_DTYPE_t, __pyx_t_3ml3_DTYPE_t, __pyx_t_3ml3_DTYPE_t, __pyx_t_3ml3_DTYPE_t, __pyx_t_3ml3_DTYPE_t); /*proto*/ +static __pyx_t_3ml3_DTYPE_t __pyx_f_3ml3_weight_failure(int, int, __pyx_t_3ml3_DTYPE_t, __pyx_t_3ml3_DTYPE_t, __pyx_t_3ml3_DTYPE_t, __pyx_t_3ml3_DTYPE_t, __pyx_t_3ml3_DTYPE_t); /*proto*/ +static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ml3_DTYPE_t = { "DTYPE_t", NULL, sizeof(__pyx_t_3ml3_DTYPE_t), { 0 }, 0, 'R', 0, 0 }; +#define __Pyx_MODULE_NAME "ml3" +int __pyx_module_is_main_ml3 = 0; + +/* Implementation of 'ml3' */ +static PyObject *__pyx_builtin_enumerate; +static PyObject *__pyx_builtin_sum; +static PyObject *__pyx_builtin_ValueError; +static PyObject *__pyx_builtin_range; +static PyObject *__pyx_builtin_RuntimeError; +static PyObject *__pyx_pf_3ml3_ml3(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_root_victims, PyObject *__pyx_v_victims, CYTHON_UNUSED PyObject *__pyx_v_non_victims, CYTHON_UNUSED __pyx_t_3ml3_DTYPE_t __pyx_v_age, __pyx_t_3ml3_DTYPE_t __pyx_v_alpha, __pyx_t_3ml3_DTYPE_t __pyx_v_delta); /* proto */ +static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ +static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ +static char __pyx_k_B[] = "B"; +static char __pyx_k_H[] = "H"; +static char __pyx_k_I[] = "I"; +static char __pyx_k_L[] = "L"; +static char __pyx_k_O[] = "O"; +static char __pyx_k_Q[] = "Q"; +static char __pyx_k_b[] = "b"; +static char __pyx_k_d[] = "d"; +static char __pyx_k_f[] = "f"; +static char __pyx_k_g[] = "g"; +static char __pyx_k_h[] = "h"; +static char __pyx_k_i[] = "i"; +static char __pyx_k_l[] = "l"; +static char __pyx_k_q[] = "q"; +static char __pyx_k_s[] = "s"; +static char __pyx_k_t[] = "t"; +static char __pyx_k_Zd[] = "Zd"; +static char __pyx_k_Zf[] = "Zf"; +static char __pyx_k_Zg[] = "Zg"; +static char __pyx_k_dt[] = "dt"; +static char __pyx_k_ll[] = "ll"; +static char __pyx_k_np[] = "np"; +static char __pyx_k_w1[] = "w1"; +static char __pyx_k_w2[] = "w2"; +static char __pyx_k_w3[] = "w3"; +static char __pyx_k_age[] = "age"; +static char __pyx_k_dts[] = "dts"; +static char __pyx_k_inf[] = "-inf"; +static char __pyx_k_ml3[] = "ml3"; +static char __pyx_k_sum[] = "sum"; +static char __pyx_k_beta[] = "beta"; +static char __pyx_k_dist[] = "dist"; +static char __pyx_k_main[] = "__main__"; +static char __pyx_k_prnt[] = "prnt"; +static char __pyx_k_prob[] = "prob"; +static char __pyx_k_test[] = "__test__"; +static char __pyx_k_DTYPE[] = "DTYPE"; +static char __pyx_k_alpha[] = "alpha"; +static char __pyx_k_delta[] = "delta"; +static char __pyx_k_dists[] = "dists"; +static char __pyx_k_dtype[] = "dtype"; +static char __pyx_k_numpy[] = "numpy"; +static char __pyx_k_probs[] = "probs"; +static char __pyx_k_range[] = "range"; +static char __pyx_k_roots[] = "roots"; +static char __pyx_k_seeds[] = "seeds"; +static char __pyx_k_zeros[] = "zeros"; +static char __pyx_k_arange[] = "arange"; +static char __pyx_k_import[] = "__import__"; +static char __pyx_k_thresh[] = "thresh"; +static char __pyx_k_float64[] = "float64"; +static char __pyx_k_n_roots[] = "n_roots"; +static char __pyx_k_parents[] = "parents"; +static char __pyx_k_victims[] = "victims"; +static char __pyx_k_beta_add[] = "beta_add"; +static char __pyx_k_failures[] = "failures"; +static char __pyx_k_max_beta[] = "max_beta"; +static char __pyx_k_enumerate[] = "enumerate"; +static char __pyx_k_max_roots[] = "max_roots"; +static char __pyx_k_n_victims[] = "n_victims"; +static char __pyx_k_non_seeds[] = "non_seeds"; +static char __pyx_k_successes[] = "successes"; +static char __pyx_k_ValueError[] = "ValueError"; +static char __pyx_k_itervalues[] = "itervalues"; +static char __pyx_k_parent_dts[] = "parent_dts"; +static char __pyx_k_probs_fail[] = "probs_fail"; +static char __pyx_k_non_victims[] = "non_victims"; +static char __pyx_k_RuntimeError[] = "RuntimeError"; +static char __pyx_k_max_beta_add[] = "max_beta_add"; +static char __pyx_k_parent_dists[] = "parent_dists"; +static char __pyx_k_root_victims[] = "root_victims"; +static char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous"; +static char __pyx_k_Users_ben_Documents_Cascade_Pro[] = "/Users/ben/Documents/Cascade Project/criminal_cascades/experiments/ml3.pyx"; +static char __pyx_k_unknown_dtype_code_in_numpy_pxd[] = "unknown dtype code in numpy.pxd (%d)"; +static char __pyx_k_Format_string_allocated_too_shor[] = "Format string allocated too short, see comment in numpy.pxd"; +static char __pyx_k_Non_native_byte_order_not_suppor[] = "Non-native byte order not supported"; +static char __pyx_k_ndarray_is_not_Fortran_contiguou[] = "ndarray is not Fortran contiguous"; +static char __pyx_k_Format_string_allocated_too_shor_2[] = "Format string allocated too short."; +static PyObject *__pyx_n_s_DTYPE; +static PyObject *__pyx_kp_u_Format_string_allocated_too_shor; +static PyObject *__pyx_kp_u_Format_string_allocated_too_shor_2; +static PyObject *__pyx_kp_u_Non_native_byte_order_not_suppor; +static PyObject *__pyx_n_s_RuntimeError; +static PyObject *__pyx_kp_s_Users_ben_Documents_Cascade_Pro; +static PyObject *__pyx_n_s_ValueError; +static PyObject *__pyx_n_s_age; +static PyObject *__pyx_n_s_alpha; +static PyObject *__pyx_n_s_arange; +static PyObject *__pyx_n_s_beta; +static PyObject *__pyx_n_s_beta_add; +static PyObject *__pyx_n_s_delta; +static PyObject *__pyx_n_s_dist; +static PyObject *__pyx_n_s_dists; +static PyObject *__pyx_n_s_dt; +static PyObject *__pyx_n_s_dts; +static PyObject *__pyx_n_s_dtype; +static PyObject *__pyx_n_s_enumerate; +static PyObject *__pyx_n_s_failures; +static PyObject *__pyx_n_s_float64; +static PyObject *__pyx_n_s_i; +static PyObject *__pyx_n_s_import; +static PyObject *__pyx_kp_s_inf; +static PyObject *__pyx_n_s_itervalues; +static PyObject *__pyx_n_s_l; +static PyObject *__pyx_n_s_ll; +static PyObject *__pyx_n_s_main; +static PyObject *__pyx_n_s_max_beta; +static PyObject *__pyx_n_s_max_beta_add; +static PyObject *__pyx_n_s_max_roots; +static PyObject *__pyx_n_s_ml3; +static PyObject *__pyx_n_s_n_roots; +static PyObject *__pyx_n_s_n_victims; +static PyObject *__pyx_kp_u_ndarray_is_not_C_contiguous; +static PyObject *__pyx_kp_u_ndarray_is_not_Fortran_contiguou; +static PyObject *__pyx_n_s_non_seeds; +static PyObject *__pyx_n_s_non_victims; +static PyObject *__pyx_n_s_np; +static PyObject *__pyx_n_s_numpy; +static PyObject *__pyx_n_s_parent_dists; +static PyObject *__pyx_n_s_parent_dts; +static PyObject *__pyx_n_s_parents; +static PyObject *__pyx_n_s_prnt; +static PyObject *__pyx_n_s_prob; +static PyObject *__pyx_n_s_probs; +static PyObject *__pyx_n_s_probs_fail; +static PyObject *__pyx_n_s_range; +static PyObject *__pyx_n_s_root_victims; +static PyObject *__pyx_n_s_roots; +static PyObject *__pyx_n_s_s; +static PyObject *__pyx_n_s_seeds; +static PyObject *__pyx_n_s_successes; +static PyObject *__pyx_n_s_sum; +static PyObject *__pyx_n_s_t; +static PyObject *__pyx_n_s_test; +static PyObject *__pyx_n_s_thresh; +static PyObject *__pyx_kp_u_unknown_dtype_code_in_numpy_pxd; +static PyObject *__pyx_n_s_victims; +static PyObject *__pyx_n_s_w1; +static PyObject *__pyx_n_s_w2; +static PyObject *__pyx_n_s_w3; +static PyObject *__pyx_n_s_zeros; +static PyObject *__pyx_float__01; +static PyObject *__pyx_float_0_01; +static PyObject *__pyx_int_1; +static PyObject *__pyx_tuple_; +static PyObject *__pyx_tuple__2; +static PyObject *__pyx_tuple__3; +static PyObject *__pyx_tuple__4; +static PyObject *__pyx_tuple__5; +static PyObject *__pyx_tuple__6; +static PyObject *__pyx_tuple__7; +static PyObject *__pyx_tuple__8; +static PyObject *__pyx_codeobj__9; + +/* "ml3.pyx":9 + * ctypedef np.float_t DTYPE_t + * + * cdef DTYPE_t weight_success(int dist, int dt, DTYPE_t alpha, DTYPE_t delta, # <<<<<<<<<<<<<< + * DTYPE_t w1, DTYPE_t w2, DTYPE_t w3): + * """weight for successful infection, exponential time model""" + */ + +static __pyx_t_3ml3_DTYPE_t __pyx_f_3ml3_weight_success(int __pyx_v_dist, int __pyx_v_dt, __pyx_t_3ml3_DTYPE_t __pyx_v_alpha, __pyx_t_3ml3_DTYPE_t __pyx_v_delta, CYTHON_UNUSED __pyx_t_3ml3_DTYPE_t __pyx_v_w1, CYTHON_UNUSED __pyx_t_3ml3_DTYPE_t __pyx_v_w2, CYTHON_UNUSED __pyx_t_3ml3_DTYPE_t __pyx_v_w3) { + __pyx_t_3ml3_DTYPE_t __pyx_v_structural; + __pyx_t_3ml3_DTYPE_t __pyx_v_temporal; + __pyx_t_3ml3_DTYPE_t __pyx_v_result; + __pyx_t_3ml3_DTYPE_t __pyx_r; + __Pyx_RefNannyDeclarations + __Pyx_RefNannySetupContext("weight_success", 0); + + /* "ml3.pyx":13 + * """weight for successful infection, exponential time model""" + * cdef DTYPE_t structural, temporal, result + * structural = delta ** dist # <<<<<<<<<<<<<< + * temporal = log(exp(alpha)-1.) - alpha*dt + * result = log(structural) + temporal + */ + __pyx_v_structural = pow(__pyx_v_delta, ((__pyx_t_3ml3_DTYPE_t)__pyx_v_dist)); + + /* "ml3.pyx":14 + * cdef DTYPE_t structural, temporal, result + * structural = delta ** dist + * temporal = log(exp(alpha)-1.) - alpha*dt # <<<<<<<<<<<<<< + * result = log(structural) + temporal + * return result + */ + __pyx_v_temporal = (log((exp(__pyx_v_alpha) - 1.)) - (__pyx_v_alpha * __pyx_v_dt)); + + /* "ml3.pyx":15 + * structural = delta ** dist + * temporal = log(exp(alpha)-1.) - alpha*dt + * result = log(structural) + temporal # <<<<<<<<<<<<<< + * return result + * + */ + __pyx_v_result = (log(__pyx_v_structural) + __pyx_v_temporal); + + /* "ml3.pyx":16 + * temporal = log(exp(alpha)-1.) - alpha*dt + * result = log(structural) + temporal + * return result # <<<<<<<<<<<<<< + * + * cdef DTYPE_t weight_failure(int dist, int dt, DTYPE_t alpha, DTYPE_t delta, + */ + __pyx_r = __pyx_v_result; + goto __pyx_L0; + + /* "ml3.pyx":9 + * ctypedef np.float_t DTYPE_t + * + * cdef DTYPE_t weight_success(int dist, int dt, DTYPE_t alpha, DTYPE_t delta, # <<<<<<<<<<<<<< + * DTYPE_t w1, DTYPE_t w2, DTYPE_t w3): + * """weight for successful infection, exponential time model""" + */ + + /* function exit code */ + __pyx_L0:; + __Pyx_RefNannyFinishContext(); + return __pyx_r; +} + +/* "ml3.pyx":18 + * return result + * + * cdef DTYPE_t weight_failure(int dist, int dt, DTYPE_t alpha, DTYPE_t delta, # <<<<<<<<<<<<<< + * DTYPE_t w1, DTYPE_t w2, DTYPE_t w3): + * """weight for failed infection, exponential time model""" + */ + +static __pyx_t_3ml3_DTYPE_t __pyx_f_3ml3_weight_failure(int __pyx_v_dist, int __pyx_v_dt, __pyx_t_3ml3_DTYPE_t __pyx_v_alpha, __pyx_t_3ml3_DTYPE_t __pyx_v_delta, CYTHON_UNUSED __pyx_t_3ml3_DTYPE_t __pyx_v_w1, CYTHON_UNUSED __pyx_t_3ml3_DTYPE_t __pyx_v_w2, CYTHON_UNUSED __pyx_t_3ml3_DTYPE_t __pyx_v_w3) { + __pyx_t_3ml3_DTYPE_t __pyx_v_structural; + __pyx_t_3ml3_DTYPE_t __pyx_v_temporal; + __pyx_t_3ml3_DTYPE_t __pyx_v_result; + __pyx_t_3ml3_DTYPE_t __pyx_r; + __Pyx_RefNannyDeclarations + __Pyx_RefNannySetupContext("weight_failure", 0); + + /* "ml3.pyx":22 + * """weight for failed infection, exponential time model""" + * cdef DTYPE_t structural, temporal, result + * structural = delta ** dist # <<<<<<<<<<<<<< + * temporal = exp(-alpha * dt) + * result = log(1. - structural + structural * temporal) + */ + __pyx_v_structural = pow(__pyx_v_delta, ((__pyx_t_3ml3_DTYPE_t)__pyx_v_dist)); + + /* "ml3.pyx":23 + * cdef DTYPE_t structural, temporal, result + * structural = delta ** dist + * temporal = exp(-alpha * dt) # <<<<<<<<<<<<<< + * result = log(1. - structural + structural * temporal) + * return result + */ + __pyx_v_temporal = exp(((-__pyx_v_alpha) * __pyx_v_dt)); + + /* "ml3.pyx":24 + * structural = delta ** dist + * temporal = exp(-alpha * dt) + * result = log(1. - structural + structural * temporal) # <<<<<<<<<<<<<< + * return result + * + */ + __pyx_v_result = log(((1. - __pyx_v_structural) + (__pyx_v_structural * __pyx_v_temporal))); + + /* "ml3.pyx":25 + * temporal = exp(-alpha * dt) + * result = log(1. - structural + structural * temporal) + * return result # <<<<<<<<<<<<<< + * + * def ml3(dict root_victims, dict victims, dict non_victims, DTYPE_t age, + */ + __pyx_r = __pyx_v_result; + goto __pyx_L0; + + /* "ml3.pyx":18 + * return result + * + * cdef DTYPE_t weight_failure(int dist, int dt, DTYPE_t alpha, DTYPE_t delta, # <<<<<<<<<<<<<< + * DTYPE_t w1, DTYPE_t w2, DTYPE_t w3): + * """weight for failed infection, exponential time model""" + */ + + /* function exit code */ + __pyx_L0:; + __Pyx_RefNannyFinishContext(); + return __pyx_r; +} + +/* "ml3.pyx":27 + * return result + * + * def ml3(dict root_victims, dict victims, dict non_victims, DTYPE_t age, # <<<<<<<<<<<<<< + * DTYPE_t alpha, DTYPE_t delta): + * cdef: + */ + +/* Python wrapper */ +static PyObject *__pyx_pw_3ml3_1ml3(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ +static PyMethodDef __pyx_mdef_3ml3_1ml3 = {"ml3", (PyCFunction)__pyx_pw_3ml3_1ml3, METH_VARARGS|METH_KEYWORDS, 0}; +static PyObject *__pyx_pw_3ml3_1ml3(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) { + PyObject *__pyx_v_root_victims = 0; + PyObject *__pyx_v_victims = 0; + CYTHON_UNUSED PyObject *__pyx_v_non_victims = 0; + CYTHON_UNUSED __pyx_t_3ml3_DTYPE_t __pyx_v_age; + __pyx_t_3ml3_DTYPE_t __pyx_v_alpha; + __pyx_t_3ml3_DTYPE_t __pyx_v_delta; + int __pyx_lineno = 0; + const char *__pyx_filename = NULL; + int __pyx_clineno = 0; + PyObject *__pyx_r = 0; + __Pyx_RefNannyDeclarations + __Pyx_RefNannySetupContext("ml3 (wrapper)", 0); + { + static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_root_victims,&__pyx_n_s_victims,&__pyx_n_s_non_victims,&__pyx_n_s_age,&__pyx_n_s_alpha,&__pyx_n_s_delta,0}; + PyObject* values[6] = {0,0,0,0,0,0}; + if (unlikely(__pyx_kwds)) { + Py_ssize_t kw_args; + const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args); + switch (pos_args) { + case 6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5); + case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4); + case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3); + case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2); + case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); + case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); + case 0: break; + default: goto __pyx_L5_argtuple_error; + } + kw_args = PyDict_Size(__pyx_kwds); + switch (pos_args) { + case 0: + if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_root_victims)) != 0)) kw_args--; + else goto __pyx_L5_argtuple_error; + case 1: + if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_victims)) != 0)) kw_args--; + else { + __Pyx_RaiseArgtupleInvalid("ml3", 1, 6, 6, 1); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + } + case 2: + if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_non_victims)) != 0)) kw_args--; + else { + __Pyx_RaiseArgtupleInvalid("ml3", 1, 6, 6, 2); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + } + case 3: + if (likely((values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_age)) != 0)) kw_args--; + else { + __Pyx_RaiseArgtupleInvalid("ml3", 1, 6, 6, 3); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + } + case 4: + if (likely((values[4] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_alpha)) != 0)) kw_args--; + else { + __Pyx_RaiseArgtupleInvalid("ml3", 1, 6, 6, 4); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + } + case 5: + if (likely((values[5] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_delta)) != 0)) kw_args--; + else { + __Pyx_RaiseArgtupleInvalid("ml3", 1, 6, 6, 5); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + } + } + if (unlikely(kw_args > 0)) { + if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "ml3") < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + } + } else if (PyTuple_GET_SIZE(__pyx_args) != 6) { + goto __pyx_L5_argtuple_error; + } else { + values[0] = PyTuple_GET_ITEM(__pyx_args, 0); + values[1] = PyTuple_GET_ITEM(__pyx_args, 1); + values[2] = PyTuple_GET_ITEM(__pyx_args, 2); + values[3] = PyTuple_GET_ITEM(__pyx_args, 3); + values[4] = PyTuple_GET_ITEM(__pyx_args, 4); + values[5] = PyTuple_GET_ITEM(__pyx_args, 5); + } + __pyx_v_root_victims = ((PyObject*)values[0]); + __pyx_v_victims = ((PyObject*)values[1]); + __pyx_v_non_victims = ((PyObject*)values[2]); + __pyx_v_age = __pyx_PyFloat_AsDouble(values[3]); if (unlikely((__pyx_v_age == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + __pyx_v_alpha = __pyx_PyFloat_AsDouble(values[4]); if (unlikely((__pyx_v_alpha == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 28; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + __pyx_v_delta = __pyx_PyFloat_AsDouble(values[5]); if (unlikely((__pyx_v_delta == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 28; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + } + goto __pyx_L4_argument_unpacking_done; + __pyx_L5_argtuple_error:; + __Pyx_RaiseArgtupleInvalid("ml3", 1, 6, 6, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + __pyx_L3_error:; + __Pyx_AddTraceback("ml3.ml3", __pyx_clineno, __pyx_lineno, __pyx_filename); + __Pyx_RefNannyFinishContext(); + return NULL; + __pyx_L4_argument_unpacking_done:; + if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_root_victims), (&PyDict_Type), 1, "root_victims", 1))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_victims), (&PyDict_Type), 1, "victims", 1))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_non_victims), (&PyDict_Type), 1, "non_victims", 1))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_r = __pyx_pf_3ml3_ml3(__pyx_self, __pyx_v_root_victims, __pyx_v_victims, __pyx_v_non_victims, __pyx_v_age, __pyx_v_alpha, __pyx_v_delta); + + /* function exit code */ + goto __pyx_L0; + __pyx_L1_error:; + __pyx_r = NULL; + __pyx_L0:; + __Pyx_RefNannyFinishContext(); + return __pyx_r; +} + +static PyObject *__pyx_pf_3ml3_ml3(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_root_victims, PyObject *__pyx_v_victims, CYTHON_UNUSED PyObject *__pyx_v_non_victims, CYTHON_UNUSED __pyx_t_3ml3_DTYPE_t __pyx_v_age, __pyx_t_3ml3_DTYPE_t __pyx_v_alpha, __pyx_t_3ml3_DTYPE_t __pyx_v_delta) { + int __pyx_v_n_roots; + int __pyx_v_n_victims; + int __pyx_v_roots; + int __pyx_v_i; + int __pyx_v_dist; + int __pyx_v_dt; + int __pyx_v_l; + __pyx_t_3ml3_DTYPE_t __pyx_v_beta; + __pyx_t_3ml3_DTYPE_t __pyx_v_ll; + __pyx_t_3ml3_DTYPE_t __pyx_v_beta_add; + __pyx_t_3ml3_DTYPE_t __pyx_v_max_beta; + __pyx_t_3ml3_DTYPE_t __pyx_v_max_beta_add; + PyObject *__pyx_v_parents = 0; + PyObject *__pyx_v_failures = 0; + PyObject *__pyx_v_successes = 0; + PyArrayObject *__pyx_v_probs = 0; + PyArrayObject *__pyx_v_probs_fail = 0; + PyArrayObject *__pyx_v_parent_dists = 0; + PyArrayObject *__pyx_v_parent_dts = 0; + PyObject *__pyx_v_dists = NULL; + PyObject *__pyx_v_dts = NULL; + PyObject *__pyx_v_s = NULL; + PyObject *__pyx_v_prob = NULL; + double __pyx_v_thresh; + PyObject *__pyx_v_seeds = NULL; + PyObject *__pyx_v_non_seeds = NULL; + int __pyx_v_max_roots; + CYTHON_UNUSED PyObject *__pyx_v_prnt = NULL; + PyObject *__pyx_v_w1 = NULL; + PyObject *__pyx_v_w2 = NULL; + PyObject *__pyx_v_w3 = NULL; + __Pyx_LocalBuf_ND __pyx_pybuffernd_parent_dists; + __Pyx_Buffer __pyx_pybuffer_parent_dists; + __Pyx_LocalBuf_ND __pyx_pybuffernd_parent_dts; + __Pyx_Buffer __pyx_pybuffer_parent_dts; + __Pyx_LocalBuf_ND __pyx_pybuffernd_probs; + __Pyx_Buffer __pyx_pybuffer_probs; + __Pyx_LocalBuf_ND __pyx_pybuffernd_probs_fail; + __Pyx_Buffer __pyx_pybuffer_probs_fail; + PyObject *__pyx_r = NULL; + __Pyx_RefNannyDeclarations + Py_ssize_t __pyx_t_1; + Py_ssize_t __pyx_t_2; + PyObject *__pyx_t_3 = NULL; + PyObject *__pyx_t_4 = NULL; + PyObject *__pyx_t_5 = NULL; + PyObject *__pyx_t_6 = NULL; + PyArrayObject *__pyx_t_7 = NULL; + PyArrayObject *__pyx_t_8 = NULL; + PyArrayObject *__pyx_t_9 = NULL; + PyArrayObject *__pyx_t_10 = NULL; + int __pyx_t_11; + int __pyx_t_12; + int __pyx_t_13; + Py_ssize_t __pyx_t_14; + PyObject *__pyx_t_15 = NULL; + PyObject *__pyx_t_16 = NULL; + PyObject *__pyx_t_17 = NULL; + PyObject *__pyx_t_18 = NULL; + PyObject *__pyx_t_19 = NULL; + PyObject *__pyx_t_20 = NULL; + PyObject *__pyx_t_21 = NULL; + PyObject *(*__pyx_t_22)(PyObject *); + int __pyx_t_23; + __pyx_t_3ml3_DTYPE_t __pyx_t_24; + __pyx_t_3ml3_DTYPE_t __pyx_t_25; + __pyx_t_3ml3_DTYPE_t __pyx_t_26; + int __pyx_t_27; + double __pyx_t_28; + int __pyx_t_29; + int __pyx_t_30; + int __pyx_t_31; + int __pyx_t_32; + int __pyx_t_33; + PyObject *(*__pyx_t_34)(PyObject *); + int __pyx_lineno = 0; + const char *__pyx_filename = NULL; + int __pyx_clineno = 0; + __Pyx_RefNannySetupContext("ml3", 0); + __pyx_pybuffer_probs.pybuffer.buf = NULL; + __pyx_pybuffer_probs.refcount = 0; + __pyx_pybuffernd_probs.data = NULL; + __pyx_pybuffernd_probs.rcbuffer = &__pyx_pybuffer_probs; + __pyx_pybuffer_probs_fail.pybuffer.buf = NULL; + __pyx_pybuffer_probs_fail.refcount = 0; + __pyx_pybuffernd_probs_fail.data = NULL; + __pyx_pybuffernd_probs_fail.rcbuffer = &__pyx_pybuffer_probs_fail; + __pyx_pybuffer_parent_dists.pybuffer.buf = NULL; + __pyx_pybuffer_parent_dists.refcount = 0; + __pyx_pybuffernd_parent_dists.data = NULL; + __pyx_pybuffernd_parent_dists.rcbuffer = &__pyx_pybuffer_parent_dists; + __pyx_pybuffer_parent_dts.pybuffer.buf = NULL; + __pyx_pybuffer_parent_dts.refcount = 0; + __pyx_pybuffernd_parent_dts.data = NULL; + __pyx_pybuffernd_parent_dts.rcbuffer = &__pyx_pybuffer_parent_dts; + + /* "ml3.pyx":33 + * DTYPE_t beta, ll, beta_add, max_beta, max_beta_add + * list parents, failures, successes + * n_roots, n_victims = len(root_victims), len(victims) # <<<<<<<<<<<<<< + * cdef: + * np.ndarray[DTYPE_t] probs = np.zeros(n_victims, dtype=DTYPE) + */ + if (unlikely(__pyx_v_root_victims == Py_None)) { + PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()"); + {__pyx_filename = __pyx_f[0]; __pyx_lineno = 33; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + __pyx_t_1 = PyDict_Size(__pyx_v_root_victims); if (unlikely(__pyx_t_1 == -1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 33; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (unlikely(__pyx_v_victims == Py_None)) { + PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()"); + {__pyx_filename = __pyx_f[0]; __pyx_lineno = 33; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + __pyx_t_2 = PyDict_Size(__pyx_v_victims); if (unlikely(__pyx_t_2 == -1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 33; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_v_n_roots = __pyx_t_1; + __pyx_v_n_victims = __pyx_t_2; + + /* "ml3.pyx":35 + * n_roots, n_victims = len(root_victims), len(victims) + * cdef: + * np.ndarray[DTYPE_t] probs = np.zeros(n_victims, dtype=DTYPE) # <<<<<<<<<<<<<< + * np.ndarray[DTYPE_t] probs_fail = np.zeros(n_victims, dtype=DTYPE) + * np.ndarray[DTYPE_t] parent_dists = np.zeros(n_victims, dtype=DTYPE) + */ + __pyx_t_3 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_zeros); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_n_victims); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_5 = PyTuple_New(1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_5); + PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_3); + __Pyx_GIVEREF(__pyx_t_3); + __pyx_t_3 = 0; + __pyx_t_3 = PyDict_New(); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_6 = __Pyx_GetModuleGlobalName(__pyx_n_s_DTYPE); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_6); + if (PyDict_SetItem(__pyx_t_3, __pyx_n_s_dtype, __pyx_t_6) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; + __pyx_t_6 = __Pyx_PyObject_Call(__pyx_t_4, __pyx_t_5, __pyx_t_3); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_6); + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + if (!(likely(((__pyx_t_6) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_6, __pyx_ptype_5numpy_ndarray))))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_7 = ((PyArrayObject *)__pyx_t_6); + { + __Pyx_BufFmt_StackElem __pyx_stack[1]; + if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_probs.rcbuffer->pybuffer, (PyObject*)__pyx_t_7, &__Pyx_TypeInfo_nn___pyx_t_3ml3_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack) == -1)) { + __pyx_v_probs = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_probs.rcbuffer->pybuffer.buf = NULL; + {__pyx_filename = __pyx_f[0]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } else {__pyx_pybuffernd_probs.diminfo[0].strides = __pyx_pybuffernd_probs.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_probs.diminfo[0].shape = __pyx_pybuffernd_probs.rcbuffer->pybuffer.shape[0]; + } + } + __pyx_t_7 = 0; + __pyx_v_probs = ((PyArrayObject *)__pyx_t_6); + __pyx_t_6 = 0; + + /* "ml3.pyx":36 + * cdef: + * np.ndarray[DTYPE_t] probs = np.zeros(n_victims, dtype=DTYPE) + * np.ndarray[DTYPE_t] probs_fail = np.zeros(n_victims, dtype=DTYPE) # <<<<<<<<<<<<<< + * np.ndarray[DTYPE_t] parent_dists = np.zeros(n_victims, dtype=DTYPE) + * np.ndarray[DTYPE_t] parent_dts = np.zeros(n_victims, dtype=DTYPE) + */ + __pyx_t_6 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_6); + __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_n_s_zeros); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; + __pyx_t_6 = __Pyx_PyInt_From_int(__pyx_v_n_victims); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_6); + __pyx_t_5 = PyTuple_New(1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_5); + PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_6); + __Pyx_GIVEREF(__pyx_t_6); + __pyx_t_6 = 0; + __pyx_t_6 = PyDict_New(); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_6); + __pyx_t_4 = __Pyx_GetModuleGlobalName(__pyx_n_s_DTYPE); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + if (PyDict_SetItem(__pyx_t_6, __pyx_n_s_dtype, __pyx_t_4) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __pyx_t_4 = __Pyx_PyObject_Call(__pyx_t_3, __pyx_t_5, __pyx_t_6); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; + __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; + if (!(likely(((__pyx_t_4) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_4, __pyx_ptype_5numpy_ndarray))))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_8 = ((PyArrayObject *)__pyx_t_4); + { + __Pyx_BufFmt_StackElem __pyx_stack[1]; + if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_probs_fail.rcbuffer->pybuffer, (PyObject*)__pyx_t_8, &__Pyx_TypeInfo_nn___pyx_t_3ml3_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack) == -1)) { + __pyx_v_probs_fail = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_probs_fail.rcbuffer->pybuffer.buf = NULL; + {__pyx_filename = __pyx_f[0]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } else {__pyx_pybuffernd_probs_fail.diminfo[0].strides = __pyx_pybuffernd_probs_fail.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_probs_fail.diminfo[0].shape = __pyx_pybuffernd_probs_fail.rcbuffer->pybuffer.shape[0]; + } + } + __pyx_t_8 = 0; + __pyx_v_probs_fail = ((PyArrayObject *)__pyx_t_4); + __pyx_t_4 = 0; + + /* "ml3.pyx":37 + * np.ndarray[DTYPE_t] probs = np.zeros(n_victims, dtype=DTYPE) + * np.ndarray[DTYPE_t] probs_fail = np.zeros(n_victims, dtype=DTYPE) + * np.ndarray[DTYPE_t] parent_dists = np.zeros(n_victims, dtype=DTYPE) # <<<<<<<<<<<<<< + * np.ndarray[DTYPE_t] parent_dts = np.zeros(n_victims, dtype=DTYPE) + * + */ + __pyx_t_4 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 37; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_t_4, __pyx_n_s_zeros); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 37; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_6); + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __pyx_t_4 = __Pyx_PyInt_From_int(__pyx_v_n_victims); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 37; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __pyx_t_5 = PyTuple_New(1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 37; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_5); + PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_4); + __Pyx_GIVEREF(__pyx_t_4); + __pyx_t_4 = 0; + __pyx_t_4 = PyDict_New(); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 37; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __pyx_t_3 = __Pyx_GetModuleGlobalName(__pyx_n_s_DTYPE); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 37; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + if (PyDict_SetItem(__pyx_t_4, __pyx_n_s_dtype, __pyx_t_3) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 37; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __pyx_t_3 = __Pyx_PyObject_Call(__pyx_t_6, __pyx_t_5, __pyx_t_4); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 37; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; + __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + if (!(likely(((__pyx_t_3) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_3, __pyx_ptype_5numpy_ndarray))))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 37; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_9 = ((PyArrayObject *)__pyx_t_3); + { + __Pyx_BufFmt_StackElem __pyx_stack[1]; + if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_parent_dists.rcbuffer->pybuffer, (PyObject*)__pyx_t_9, &__Pyx_TypeInfo_nn___pyx_t_3ml3_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack) == -1)) { + __pyx_v_parent_dists = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_parent_dists.rcbuffer->pybuffer.buf = NULL; + {__pyx_filename = __pyx_f[0]; __pyx_lineno = 37; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } else {__pyx_pybuffernd_parent_dists.diminfo[0].strides = __pyx_pybuffernd_parent_dists.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_parent_dists.diminfo[0].shape = __pyx_pybuffernd_parent_dists.rcbuffer->pybuffer.shape[0]; + } + } + __pyx_t_9 = 0; + __pyx_v_parent_dists = ((PyArrayObject *)__pyx_t_3); + __pyx_t_3 = 0; + + /* "ml3.pyx":38 + * np.ndarray[DTYPE_t] probs_fail = np.zeros(n_victims, dtype=DTYPE) + * np.ndarray[DTYPE_t] parent_dists = np.zeros(n_victims, dtype=DTYPE) + * np.ndarray[DTYPE_t] parent_dts = np.zeros(n_victims, dtype=DTYPE) # <<<<<<<<<<<<<< + * + * # loop through victims + */ + __pyx_t_3 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_zeros); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_n_victims); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_5 = PyTuple_New(1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_5); + PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_3); + __Pyx_GIVEREF(__pyx_t_3); + __pyx_t_3 = 0; + __pyx_t_3 = PyDict_New(); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_6 = __Pyx_GetModuleGlobalName(__pyx_n_s_DTYPE); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_6); + if (PyDict_SetItem(__pyx_t_3, __pyx_n_s_dtype, __pyx_t_6) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; + __pyx_t_6 = __Pyx_PyObject_Call(__pyx_t_4, __pyx_t_5, __pyx_t_3); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_6); + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + if (!(likely(((__pyx_t_6) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_6, __pyx_ptype_5numpy_ndarray))))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_10 = ((PyArrayObject *)__pyx_t_6); + { + __Pyx_BufFmt_StackElem __pyx_stack[1]; + if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_parent_dts.rcbuffer->pybuffer, (PyObject*)__pyx_t_10, &__Pyx_TypeInfo_nn___pyx_t_3ml3_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack) == -1)) { + __pyx_v_parent_dts = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_parent_dts.rcbuffer->pybuffer.buf = NULL; + {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } else {__pyx_pybuffernd_parent_dts.diminfo[0].strides = __pyx_pybuffernd_parent_dts.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_parent_dts.diminfo[0].shape = __pyx_pybuffernd_parent_dts.rcbuffer->pybuffer.shape[0]; + } + } + __pyx_t_10 = 0; + __pyx_v_parent_dts = ((PyArrayObject *)__pyx_t_6); + __pyx_t_6 = 0; + + /* "ml3.pyx":41 + * + * # loop through victims + * for i, parents in enumerate(victims.itervalues()): # <<<<<<<<<<<<<< + * # for each victim node i, compute the probability that all its parents + * # fail to infect it, also computes the probability that its most + */ + __pyx_t_11 = 0; + __pyx_t_2 = 0; + if (unlikely(__pyx_v_victims == Py_None)) { + PyErr_Format(PyExc_AttributeError, "'NoneType' object has no attribute '%s'", "itervalues"); + {__pyx_filename = __pyx_f[0]; __pyx_lineno = 41; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + __pyx_t_3 = __Pyx_dict_iterator(__pyx_v_victims, 1, __pyx_n_s_itervalues, (&__pyx_t_1), (&__pyx_t_12)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 41; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __Pyx_XDECREF(__pyx_t_6); + __pyx_t_6 = __pyx_t_3; + __pyx_t_3 = 0; + while (1) { + __pyx_t_13 = __Pyx_dict_iter_next(__pyx_t_6, __pyx_t_1, &__pyx_t_2, NULL, &__pyx_t_3, NULL, __pyx_t_12); + if (unlikely(__pyx_t_13 == 0)) break; + if (unlikely(__pyx_t_13 == -1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 41; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + if (!(likely(PyList_CheckExact(__pyx_t_3))||((__pyx_t_3) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(__pyx_t_3)->tp_name), 0))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 41; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_XDECREF_SET(__pyx_v_parents, ((PyObject*)__pyx_t_3)); + __pyx_t_3 = 0; + __pyx_v_i = __pyx_t_11; + __pyx_t_11 = (__pyx_t_11 + 1); + + /* "ml3.pyx":45 + * # fail to infect it, also computes the probability that its most + * # likely parent infects it + * failures = [weight_failure(dist, dt, alpha, delta, w1, w2, w3) # <<<<<<<<<<<<<< + * for (prnt, dist, dt, w1, w2, w3) in parents] + * probs_fail[i] = sum(failures) + */ + __pyx_t_3 = PyList_New(0); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 45; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + + /* "ml3.pyx":46 + * # likely parent infects it + * failures = [weight_failure(dist, dt, alpha, delta, w1, w2, w3) + * for (prnt, dist, dt, w1, w2, w3) in parents] # <<<<<<<<<<<<<< + * probs_fail[i] = sum(failures) + * successes = [weight_success(dist, dt, alpha, delta, w1, w2, w3) + */ + if (unlikely(__pyx_v_parents == Py_None)) { + PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); + {__pyx_filename = __pyx_f[0]; __pyx_lineno = 46; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + __pyx_t_5 = __pyx_v_parents; __Pyx_INCREF(__pyx_t_5); __pyx_t_14 = 0; + for (;;) { + if (__pyx_t_14 >= PyList_GET_SIZE(__pyx_t_5)) break; + #if CYTHON_COMPILING_IN_CPYTHON + __pyx_t_4 = PyList_GET_ITEM(__pyx_t_5, __pyx_t_14); __Pyx_INCREF(__pyx_t_4); __pyx_t_14++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 46; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #else + __pyx_t_4 = PySequence_ITEM(__pyx_t_5, __pyx_t_14); __pyx_t_14++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 46; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #endif + if ((likely(PyTuple_CheckExact(__pyx_t_4))) || (PyList_CheckExact(__pyx_t_4))) { + PyObject* sequence = __pyx_t_4; + #if CYTHON_COMPILING_IN_CPYTHON + Py_ssize_t size = Py_SIZE(sequence); + #else + Py_ssize_t size = PySequence_Size(sequence); + #endif + if (unlikely(size != 6)) { + if (size > 6) __Pyx_RaiseTooManyValuesError(6); + else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size); + {__pyx_filename = __pyx_f[0]; __pyx_lineno = 46; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + #if CYTHON_COMPILING_IN_CPYTHON + if (likely(PyTuple_CheckExact(sequence))) { + __pyx_t_15 = PyTuple_GET_ITEM(sequence, 0); + __pyx_t_16 = PyTuple_GET_ITEM(sequence, 1); + __pyx_t_17 = PyTuple_GET_ITEM(sequence, 2); + __pyx_t_18 = PyTuple_GET_ITEM(sequence, 3); + __pyx_t_19 = PyTuple_GET_ITEM(sequence, 4); + __pyx_t_20 = PyTuple_GET_ITEM(sequence, 5); + } else { + __pyx_t_15 = PyList_GET_ITEM(sequence, 0); + __pyx_t_16 = PyList_GET_ITEM(sequence, 1); + __pyx_t_17 = PyList_GET_ITEM(sequence, 2); + __pyx_t_18 = PyList_GET_ITEM(sequence, 3); + __pyx_t_19 = PyList_GET_ITEM(sequence, 4); + __pyx_t_20 = PyList_GET_ITEM(sequence, 5); + } + __Pyx_INCREF(__pyx_t_15); + __Pyx_INCREF(__pyx_t_16); + __Pyx_INCREF(__pyx_t_17); + __Pyx_INCREF(__pyx_t_18); + __Pyx_INCREF(__pyx_t_19); + __Pyx_INCREF(__pyx_t_20); + #else + { + Py_ssize_t i; + PyObject** temps[6] = {&__pyx_t_15,&__pyx_t_16,&__pyx_t_17,&__pyx_t_18,&__pyx_t_19,&__pyx_t_20}; + for (i=0; i < 6; i++) { + PyObject* item = PySequence_ITEM(sequence, i); if (unlikely(!item)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 46; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(item); + *(temps[i]) = item; + } + } + #endif + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + } else { + Py_ssize_t index = -1; + PyObject** temps[6] = {&__pyx_t_15,&__pyx_t_16,&__pyx_t_17,&__pyx_t_18,&__pyx_t_19,&__pyx_t_20}; + __pyx_t_21 = PyObject_GetIter(__pyx_t_4); if (unlikely(!__pyx_t_21)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 46; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_21); + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __pyx_t_22 = Py_TYPE(__pyx_t_21)->tp_iternext; + for (index=0; index < 6; index++) { + PyObject* item = __pyx_t_22(__pyx_t_21); if (unlikely(!item)) goto __pyx_L7_unpacking_failed; + __Pyx_GOTREF(item); + *(temps[index]) = item; + } + if (__Pyx_IternextUnpackEndCheck(__pyx_t_22(__pyx_t_21), 6) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 46; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_22 = NULL; + __Pyx_DECREF(__pyx_t_21); __pyx_t_21 = 0; + goto __pyx_L8_unpacking_done; + __pyx_L7_unpacking_failed:; + __Pyx_DECREF(__pyx_t_21); __pyx_t_21 = 0; + __pyx_t_22 = NULL; + if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index); + {__pyx_filename = __pyx_f[0]; __pyx_lineno = 46; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_L8_unpacking_done:; + } + __pyx_t_13 = __Pyx_PyInt_As_int(__pyx_t_16); if (unlikely((__pyx_t_13 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 46; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_16); __pyx_t_16 = 0; + __pyx_t_23 = __Pyx_PyInt_As_int(__pyx_t_17); if (unlikely((__pyx_t_23 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 46; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_17); __pyx_t_17 = 0; + __Pyx_XDECREF_SET(__pyx_v_prnt, __pyx_t_15); + __pyx_t_15 = 0; + __pyx_v_dist = __pyx_t_13; + __pyx_v_dt = __pyx_t_23; + __Pyx_XDECREF_SET(__pyx_v_w1, __pyx_t_18); + __pyx_t_18 = 0; + __Pyx_XDECREF_SET(__pyx_v_w2, __pyx_t_19); + __pyx_t_19 = 0; + __Pyx_XDECREF_SET(__pyx_v_w3, __pyx_t_20); + __pyx_t_20 = 0; + + /* "ml3.pyx":45 + * # fail to infect it, also computes the probability that its most + * # likely parent infects it + * failures = [weight_failure(dist, dt, alpha, delta, w1, w2, w3) # <<<<<<<<<<<<<< + * for (prnt, dist, dt, w1, w2, w3) in parents] + * probs_fail[i] = sum(failures) + */ + __pyx_t_24 = __pyx_PyFloat_AsDouble(__pyx_v_w1); if (unlikely((__pyx_t_24 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 45; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_25 = __pyx_PyFloat_AsDouble(__pyx_v_w2); if (unlikely((__pyx_t_25 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 45; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_26 = __pyx_PyFloat_AsDouble(__pyx_v_w3); if (unlikely((__pyx_t_26 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 45; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_4 = PyFloat_FromDouble(__pyx_f_3ml3_weight_failure(__pyx_v_dist, __pyx_v_dt, __pyx_v_alpha, __pyx_v_delta, __pyx_t_24, __pyx_t_25, __pyx_t_26)); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 45; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + if (unlikely(__Pyx_ListComp_Append(__pyx_t_3, (PyObject*)__pyx_t_4))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 45; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + + /* "ml3.pyx":46 + * # likely parent infects it + * failures = [weight_failure(dist, dt, alpha, delta, w1, w2, w3) + * for (prnt, dist, dt, w1, w2, w3) in parents] # <<<<<<<<<<<<<< + * probs_fail[i] = sum(failures) + * successes = [weight_success(dist, dt, alpha, delta, w1, w2, w3) + */ + } + __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; + __Pyx_XDECREF_SET(__pyx_v_failures, ((PyObject*)__pyx_t_3)); + __pyx_t_3 = 0; + + /* "ml3.pyx":47 + * failures = [weight_failure(dist, dt, alpha, delta, w1, w2, w3) + * for (prnt, dist, dt, w1, w2, w3) in parents] + * probs_fail[i] = sum(failures) # <<<<<<<<<<<<<< + * successes = [weight_success(dist, dt, alpha, delta, w1, w2, w3) + * for (prnt, dist, dt, w1, w2, w3) in parents] + */ + __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 47; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __Pyx_INCREF(__pyx_v_failures); + PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_v_failures); + __Pyx_GIVEREF(__pyx_v_failures); + __pyx_t_5 = __Pyx_PyObject_Call(__pyx_builtin_sum, __pyx_t_3, NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 47; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_5); + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __pyx_t_26 = __pyx_PyFloat_AsDouble(__pyx_t_5); if (unlikely((__pyx_t_26 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 47; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; + __pyx_t_23 = __pyx_v_i; + if (__pyx_t_23 < 0) __pyx_t_23 += __pyx_pybuffernd_probs_fail.diminfo[0].shape; + *__Pyx_BufPtrStrided1d(__pyx_t_3ml3_DTYPE_t *, __pyx_pybuffernd_probs_fail.rcbuffer->pybuffer.buf, __pyx_t_23, __pyx_pybuffernd_probs_fail.diminfo[0].strides) = __pyx_t_26; + + /* "ml3.pyx":48 + * for (prnt, dist, dt, w1, w2, w3) in parents] + * probs_fail[i] = sum(failures) + * successes = [weight_success(dist, dt, alpha, delta, w1, w2, w3) # <<<<<<<<<<<<<< + * for (prnt, dist, dt, w1, w2, w3) in parents] + * dists = [dist for (prnt, dist, dt, w1, w2, w3) in parents] + */ + __pyx_t_5 = PyList_New(0); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 48; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_5); + + /* "ml3.pyx":49 + * probs_fail[i] = sum(failures) + * successes = [weight_success(dist, dt, alpha, delta, w1, w2, w3) + * for (prnt, dist, dt, w1, w2, w3) in parents] # <<<<<<<<<<<<<< + * dists = [dist for (prnt, dist, dt, w1, w2, w3) in parents] + * dts = [dt for (prnt, dist, dt, w1, w2, w3) in parents] + */ + if (unlikely(__pyx_v_parents == Py_None)) { + PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); + {__pyx_filename = __pyx_f[0]; __pyx_lineno = 49; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + __pyx_t_3 = __pyx_v_parents; __Pyx_INCREF(__pyx_t_3); __pyx_t_14 = 0; + for (;;) { + if (__pyx_t_14 >= PyList_GET_SIZE(__pyx_t_3)) break; + #if CYTHON_COMPILING_IN_CPYTHON + __pyx_t_4 = PyList_GET_ITEM(__pyx_t_3, __pyx_t_14); __Pyx_INCREF(__pyx_t_4); __pyx_t_14++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 49; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #else + __pyx_t_4 = PySequence_ITEM(__pyx_t_3, __pyx_t_14); __pyx_t_14++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 49; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #endif + if ((likely(PyTuple_CheckExact(__pyx_t_4))) || (PyList_CheckExact(__pyx_t_4))) { + PyObject* sequence = __pyx_t_4; + #if CYTHON_COMPILING_IN_CPYTHON + Py_ssize_t size = Py_SIZE(sequence); + #else + Py_ssize_t size = PySequence_Size(sequence); + #endif + if (unlikely(size != 6)) { + if (size > 6) __Pyx_RaiseTooManyValuesError(6); + else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size); + {__pyx_filename = __pyx_f[0]; __pyx_lineno = 49; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + #if CYTHON_COMPILING_IN_CPYTHON + if (likely(PyTuple_CheckExact(sequence))) { + __pyx_t_20 = PyTuple_GET_ITEM(sequence, 0); + __pyx_t_19 = PyTuple_GET_ITEM(sequence, 1); + __pyx_t_18 = PyTuple_GET_ITEM(sequence, 2); + __pyx_t_17 = PyTuple_GET_ITEM(sequence, 3); + __pyx_t_16 = PyTuple_GET_ITEM(sequence, 4); + __pyx_t_15 = PyTuple_GET_ITEM(sequence, 5); + } else { + __pyx_t_20 = PyList_GET_ITEM(sequence, 0); + __pyx_t_19 = PyList_GET_ITEM(sequence, 1); + __pyx_t_18 = PyList_GET_ITEM(sequence, 2); + __pyx_t_17 = PyList_GET_ITEM(sequence, 3); + __pyx_t_16 = PyList_GET_ITEM(sequence, 4); + __pyx_t_15 = PyList_GET_ITEM(sequence, 5); + } + __Pyx_INCREF(__pyx_t_20); + __Pyx_INCREF(__pyx_t_19); + __Pyx_INCREF(__pyx_t_18); + __Pyx_INCREF(__pyx_t_17); + __Pyx_INCREF(__pyx_t_16); + __Pyx_INCREF(__pyx_t_15); + #else + { + Py_ssize_t i; + PyObject** temps[6] = {&__pyx_t_20,&__pyx_t_19,&__pyx_t_18,&__pyx_t_17,&__pyx_t_16,&__pyx_t_15}; + for (i=0; i < 6; i++) { + PyObject* item = PySequence_ITEM(sequence, i); if (unlikely(!item)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 49; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(item); + *(temps[i]) = item; + } + } + #endif + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + } else { + Py_ssize_t index = -1; + PyObject** temps[6] = {&__pyx_t_20,&__pyx_t_19,&__pyx_t_18,&__pyx_t_17,&__pyx_t_16,&__pyx_t_15}; + __pyx_t_21 = PyObject_GetIter(__pyx_t_4); if (unlikely(!__pyx_t_21)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 49; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_21); + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __pyx_t_22 = Py_TYPE(__pyx_t_21)->tp_iternext; + for (index=0; index < 6; index++) { + PyObject* item = __pyx_t_22(__pyx_t_21); if (unlikely(!item)) goto __pyx_L11_unpacking_failed; + __Pyx_GOTREF(item); + *(temps[index]) = item; + } + if (__Pyx_IternextUnpackEndCheck(__pyx_t_22(__pyx_t_21), 6) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 49; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_22 = NULL; + __Pyx_DECREF(__pyx_t_21); __pyx_t_21 = 0; + goto __pyx_L12_unpacking_done; + __pyx_L11_unpacking_failed:; + __Pyx_DECREF(__pyx_t_21); __pyx_t_21 = 0; + __pyx_t_22 = NULL; + if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index); + {__pyx_filename = __pyx_f[0]; __pyx_lineno = 49; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_L12_unpacking_done:; + } + __pyx_t_13 = __Pyx_PyInt_As_int(__pyx_t_19); if (unlikely((__pyx_t_13 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 49; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_19); __pyx_t_19 = 0; + __pyx_t_27 = __Pyx_PyInt_As_int(__pyx_t_18); if (unlikely((__pyx_t_27 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 49; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_18); __pyx_t_18 = 0; + __Pyx_XDECREF_SET(__pyx_v_prnt, __pyx_t_20); + __pyx_t_20 = 0; + __pyx_v_dist = __pyx_t_13; + __pyx_v_dt = __pyx_t_27; + __Pyx_XDECREF_SET(__pyx_v_w1, __pyx_t_17); + __pyx_t_17 = 0; + __Pyx_XDECREF_SET(__pyx_v_w2, __pyx_t_16); + __pyx_t_16 = 0; + __Pyx_XDECREF_SET(__pyx_v_w3, __pyx_t_15); + __pyx_t_15 = 0; + + /* "ml3.pyx":48 + * for (prnt, dist, dt, w1, w2, w3) in parents] + * probs_fail[i] = sum(failures) + * successes = [weight_success(dist, dt, alpha, delta, w1, w2, w3) # <<<<<<<<<<<<<< + * for (prnt, dist, dt, w1, w2, w3) in parents] + * dists = [dist for (prnt, dist, dt, w1, w2, w3) in parents] + */ + __pyx_t_26 = __pyx_PyFloat_AsDouble(__pyx_v_w1); if (unlikely((__pyx_t_26 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 48; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_25 = __pyx_PyFloat_AsDouble(__pyx_v_w2); if (unlikely((__pyx_t_25 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 48; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_24 = __pyx_PyFloat_AsDouble(__pyx_v_w3); if (unlikely((__pyx_t_24 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 48; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_4 = PyFloat_FromDouble(__pyx_f_3ml3_weight_success(__pyx_v_dist, __pyx_v_dt, __pyx_v_alpha, __pyx_v_delta, __pyx_t_26, __pyx_t_25, __pyx_t_24)); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 48; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + if (unlikely(__Pyx_ListComp_Append(__pyx_t_5, (PyObject*)__pyx_t_4))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 48; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + + /* "ml3.pyx":49 + * probs_fail[i] = sum(failures) + * successes = [weight_success(dist, dt, alpha, delta, w1, w2, w3) + * for (prnt, dist, dt, w1, w2, w3) in parents] # <<<<<<<<<<<<<< + * dists = [dist for (prnt, dist, dt, w1, w2, w3) in parents] + * dts = [dt for (prnt, dist, dt, w1, w2, w3) in parents] + */ + } + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __Pyx_XDECREF_SET(__pyx_v_successes, ((PyObject*)__pyx_t_5)); + __pyx_t_5 = 0; + + /* "ml3.pyx":50 + * successes = [weight_success(dist, dt, alpha, delta, w1, w2, w3) + * for (prnt, dist, dt, w1, w2, w3) in parents] + * dists = [dist for (prnt, dist, dt, w1, w2, w3) in parents] # <<<<<<<<<<<<<< + * dts = [dt for (prnt, dist, dt, w1, w2, w3) in parents] + * # find parent that maximizes log(p) - log(\tilde{p}) + */ + __pyx_t_5 = PyList_New(0); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_5); + if (unlikely(__pyx_v_parents == Py_None)) { + PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); + {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + __pyx_t_3 = __pyx_v_parents; __Pyx_INCREF(__pyx_t_3); __pyx_t_14 = 0; + for (;;) { + if (__pyx_t_14 >= PyList_GET_SIZE(__pyx_t_3)) break; + #if CYTHON_COMPILING_IN_CPYTHON + __pyx_t_4 = PyList_GET_ITEM(__pyx_t_3, __pyx_t_14); __Pyx_INCREF(__pyx_t_4); __pyx_t_14++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #else + __pyx_t_4 = PySequence_ITEM(__pyx_t_3, __pyx_t_14); __pyx_t_14++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #endif + if ((likely(PyTuple_CheckExact(__pyx_t_4))) || (PyList_CheckExact(__pyx_t_4))) { + PyObject* sequence = __pyx_t_4; + #if CYTHON_COMPILING_IN_CPYTHON + Py_ssize_t size = Py_SIZE(sequence); + #else + Py_ssize_t size = PySequence_Size(sequence); + #endif + if (unlikely(size != 6)) { + if (size > 6) __Pyx_RaiseTooManyValuesError(6); + else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size); + {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + #if CYTHON_COMPILING_IN_CPYTHON + if (likely(PyTuple_CheckExact(sequence))) { + __pyx_t_15 = PyTuple_GET_ITEM(sequence, 0); + __pyx_t_16 = PyTuple_GET_ITEM(sequence, 1); + __pyx_t_17 = PyTuple_GET_ITEM(sequence, 2); + __pyx_t_18 = PyTuple_GET_ITEM(sequence, 3); + __pyx_t_19 = PyTuple_GET_ITEM(sequence, 4); + __pyx_t_20 = PyTuple_GET_ITEM(sequence, 5); + } else { + __pyx_t_15 = PyList_GET_ITEM(sequence, 0); + __pyx_t_16 = PyList_GET_ITEM(sequence, 1); + __pyx_t_17 = PyList_GET_ITEM(sequence, 2); + __pyx_t_18 = PyList_GET_ITEM(sequence, 3); + __pyx_t_19 = PyList_GET_ITEM(sequence, 4); + __pyx_t_20 = PyList_GET_ITEM(sequence, 5); + } + __Pyx_INCREF(__pyx_t_15); + __Pyx_INCREF(__pyx_t_16); + __Pyx_INCREF(__pyx_t_17); + __Pyx_INCREF(__pyx_t_18); + __Pyx_INCREF(__pyx_t_19); + __Pyx_INCREF(__pyx_t_20); + #else + { + Py_ssize_t i; + PyObject** temps[6] = {&__pyx_t_15,&__pyx_t_16,&__pyx_t_17,&__pyx_t_18,&__pyx_t_19,&__pyx_t_20}; + for (i=0; i < 6; i++) { + PyObject* item = PySequence_ITEM(sequence, i); if (unlikely(!item)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(item); + *(temps[i]) = item; + } + } + #endif + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + } else { + Py_ssize_t index = -1; + PyObject** temps[6] = {&__pyx_t_15,&__pyx_t_16,&__pyx_t_17,&__pyx_t_18,&__pyx_t_19,&__pyx_t_20}; + __pyx_t_21 = PyObject_GetIter(__pyx_t_4); if (unlikely(!__pyx_t_21)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_21); + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __pyx_t_22 = Py_TYPE(__pyx_t_21)->tp_iternext; + for (index=0; index < 6; index++) { + PyObject* item = __pyx_t_22(__pyx_t_21); if (unlikely(!item)) goto __pyx_L15_unpacking_failed; + __Pyx_GOTREF(item); + *(temps[index]) = item; + } + if (__Pyx_IternextUnpackEndCheck(__pyx_t_22(__pyx_t_21), 6) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_22 = NULL; + __Pyx_DECREF(__pyx_t_21); __pyx_t_21 = 0; + goto __pyx_L16_unpacking_done; + __pyx_L15_unpacking_failed:; + __Pyx_DECREF(__pyx_t_21); __pyx_t_21 = 0; + __pyx_t_22 = NULL; + if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index); + {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_L16_unpacking_done:; + } + __pyx_t_27 = __Pyx_PyInt_As_int(__pyx_t_16); if (unlikely((__pyx_t_27 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_16); __pyx_t_16 = 0; + __pyx_t_13 = __Pyx_PyInt_As_int(__pyx_t_17); if (unlikely((__pyx_t_13 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_17); __pyx_t_17 = 0; + __Pyx_XDECREF_SET(__pyx_v_prnt, __pyx_t_15); + __pyx_t_15 = 0; + __pyx_v_dist = __pyx_t_27; + __pyx_v_dt = __pyx_t_13; + __Pyx_XDECREF_SET(__pyx_v_w1, __pyx_t_18); + __pyx_t_18 = 0; + __Pyx_XDECREF_SET(__pyx_v_w2, __pyx_t_19); + __pyx_t_19 = 0; + __Pyx_XDECREF_SET(__pyx_v_w3, __pyx_t_20); + __pyx_t_20 = 0; + __pyx_t_4 = __Pyx_PyInt_From_int(__pyx_v_dist); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + if (unlikely(__Pyx_ListComp_Append(__pyx_t_5, (PyObject*)__pyx_t_4))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + } + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __Pyx_XDECREF_SET(__pyx_v_dists, ((PyObject*)__pyx_t_5)); + __pyx_t_5 = 0; + + /* "ml3.pyx":51 + * for (prnt, dist, dt, w1, w2, w3) in parents] + * dists = [dist for (prnt, dist, dt, w1, w2, w3) in parents] + * dts = [dt for (prnt, dist, dt, w1, w2, w3) in parents] # <<<<<<<<<<<<<< + * # find parent that maximizes log(p) - log(\tilde{p}) + * # probs[i] = max(s - failures[l] for l, s in enumerate(successes)) + */ + __pyx_t_5 = PyList_New(0); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_5); + if (unlikely(__pyx_v_parents == Py_None)) { + PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); + {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + __pyx_t_3 = __pyx_v_parents; __Pyx_INCREF(__pyx_t_3); __pyx_t_14 = 0; + for (;;) { + if (__pyx_t_14 >= PyList_GET_SIZE(__pyx_t_3)) break; + #if CYTHON_COMPILING_IN_CPYTHON + __pyx_t_4 = PyList_GET_ITEM(__pyx_t_3, __pyx_t_14); __Pyx_INCREF(__pyx_t_4); __pyx_t_14++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #else + __pyx_t_4 = PySequence_ITEM(__pyx_t_3, __pyx_t_14); __pyx_t_14++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #endif + if ((likely(PyTuple_CheckExact(__pyx_t_4))) || (PyList_CheckExact(__pyx_t_4))) { + PyObject* sequence = __pyx_t_4; + #if CYTHON_COMPILING_IN_CPYTHON + Py_ssize_t size = Py_SIZE(sequence); + #else + Py_ssize_t size = PySequence_Size(sequence); + #endif + if (unlikely(size != 6)) { + if (size > 6) __Pyx_RaiseTooManyValuesError(6); + else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size); + {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + #if CYTHON_COMPILING_IN_CPYTHON + if (likely(PyTuple_CheckExact(sequence))) { + __pyx_t_20 = PyTuple_GET_ITEM(sequence, 0); + __pyx_t_19 = PyTuple_GET_ITEM(sequence, 1); + __pyx_t_18 = PyTuple_GET_ITEM(sequence, 2); + __pyx_t_17 = PyTuple_GET_ITEM(sequence, 3); + __pyx_t_16 = PyTuple_GET_ITEM(sequence, 4); + __pyx_t_15 = PyTuple_GET_ITEM(sequence, 5); + } else { + __pyx_t_20 = PyList_GET_ITEM(sequence, 0); + __pyx_t_19 = PyList_GET_ITEM(sequence, 1); + __pyx_t_18 = PyList_GET_ITEM(sequence, 2); + __pyx_t_17 = PyList_GET_ITEM(sequence, 3); + __pyx_t_16 = PyList_GET_ITEM(sequence, 4); + __pyx_t_15 = PyList_GET_ITEM(sequence, 5); + } + __Pyx_INCREF(__pyx_t_20); + __Pyx_INCREF(__pyx_t_19); + __Pyx_INCREF(__pyx_t_18); + __Pyx_INCREF(__pyx_t_17); + __Pyx_INCREF(__pyx_t_16); + __Pyx_INCREF(__pyx_t_15); + #else + { + Py_ssize_t i; + PyObject** temps[6] = {&__pyx_t_20,&__pyx_t_19,&__pyx_t_18,&__pyx_t_17,&__pyx_t_16,&__pyx_t_15}; + for (i=0; i < 6; i++) { + PyObject* item = PySequence_ITEM(sequence, i); if (unlikely(!item)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(item); + *(temps[i]) = item; + } + } + #endif + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + } else { + Py_ssize_t index = -1; + PyObject** temps[6] = {&__pyx_t_20,&__pyx_t_19,&__pyx_t_18,&__pyx_t_17,&__pyx_t_16,&__pyx_t_15}; + __pyx_t_21 = PyObject_GetIter(__pyx_t_4); if (unlikely(!__pyx_t_21)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_21); + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __pyx_t_22 = Py_TYPE(__pyx_t_21)->tp_iternext; + for (index=0; index < 6; index++) { + PyObject* item = __pyx_t_22(__pyx_t_21); if (unlikely(!item)) goto __pyx_L19_unpacking_failed; + __Pyx_GOTREF(item); + *(temps[index]) = item; + } + if (__Pyx_IternextUnpackEndCheck(__pyx_t_22(__pyx_t_21), 6) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_22 = NULL; + __Pyx_DECREF(__pyx_t_21); __pyx_t_21 = 0; + goto __pyx_L20_unpacking_done; + __pyx_L19_unpacking_failed:; + __Pyx_DECREF(__pyx_t_21); __pyx_t_21 = 0; + __pyx_t_22 = NULL; + if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index); + {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_L20_unpacking_done:; + } + __pyx_t_13 = __Pyx_PyInt_As_int(__pyx_t_19); if (unlikely((__pyx_t_13 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_19); __pyx_t_19 = 0; + __pyx_t_27 = __Pyx_PyInt_As_int(__pyx_t_18); if (unlikely((__pyx_t_27 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_18); __pyx_t_18 = 0; + __Pyx_XDECREF_SET(__pyx_v_prnt, __pyx_t_20); + __pyx_t_20 = 0; + __pyx_v_dist = __pyx_t_13; + __pyx_v_dt = __pyx_t_27; + __Pyx_XDECREF_SET(__pyx_v_w1, __pyx_t_17); + __pyx_t_17 = 0; + __Pyx_XDECREF_SET(__pyx_v_w2, __pyx_t_16); + __pyx_t_16 = 0; + __Pyx_XDECREF_SET(__pyx_v_w3, __pyx_t_15); + __pyx_t_15 = 0; + __pyx_t_4 = __Pyx_PyInt_From_int(__pyx_v_dt); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + if (unlikely(__Pyx_ListComp_Append(__pyx_t_5, (PyObject*)__pyx_t_4))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + } + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __Pyx_XDECREF_SET(__pyx_v_dts, ((PyObject*)__pyx_t_5)); + __pyx_t_5 = 0; + + /* "ml3.pyx":54 + * # find parent that maximizes log(p) - log(\tilde{p}) + * # probs[i] = max(s - failures[l] for l, s in enumerate(successes)) + * probs[i] = float("-inf") # <<<<<<<<<<<<<< + * for l, s in enumerate(successes): + * prob = s - failures[l] + */ + __pyx_t_28 = __Pyx_PyObject_AsDouble(__pyx_kp_s_inf); if (unlikely(__pyx_t_28 == ((double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 54; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_27 = __pyx_v_i; + if (__pyx_t_27 < 0) __pyx_t_27 += __pyx_pybuffernd_probs.diminfo[0].shape; + *__Pyx_BufPtrStrided1d(__pyx_t_3ml3_DTYPE_t *, __pyx_pybuffernd_probs.rcbuffer->pybuffer.buf, __pyx_t_27, __pyx_pybuffernd_probs.diminfo[0].strides) = __pyx_t_28; + + /* "ml3.pyx":55 + * # probs[i] = max(s - failures[l] for l, s in enumerate(successes)) + * probs[i] = float("-inf") + * for l, s in enumerate(successes): # <<<<<<<<<<<<<< + * prob = s - failures[l] + * if prob > probs[i]: + */ + __pyx_t_13 = 0; + __pyx_t_5 = __pyx_v_successes; __Pyx_INCREF(__pyx_t_5); __pyx_t_14 = 0; + for (;;) { + if (__pyx_t_14 >= PyList_GET_SIZE(__pyx_t_5)) break; + #if CYTHON_COMPILING_IN_CPYTHON + __pyx_t_3 = PyList_GET_ITEM(__pyx_t_5, __pyx_t_14); __Pyx_INCREF(__pyx_t_3); __pyx_t_14++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 55; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #else + __pyx_t_3 = PySequence_ITEM(__pyx_t_5, __pyx_t_14); __pyx_t_14++; if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 55; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #endif + __Pyx_XDECREF_SET(__pyx_v_s, __pyx_t_3); + __pyx_t_3 = 0; + __pyx_v_l = __pyx_t_13; + __pyx_t_13 = (__pyx_t_13 + 1); + + /* "ml3.pyx":56 + * probs[i] = float("-inf") + * for l, s in enumerate(successes): + * prob = s - failures[l] # <<<<<<<<<<<<<< + * if prob > probs[i]: + * probs[i] = prob + */ + __pyx_t_3 = __Pyx_GetItemInt_List(__pyx_v_failures, __pyx_v_l, int, 1, __Pyx_PyInt_From_int, 1, 1, 0); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 56; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_4 = PyNumber_Subtract(__pyx_v_s, __pyx_t_3); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 56; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __Pyx_XDECREF_SET(__pyx_v_prob, __pyx_t_4); + __pyx_t_4 = 0; + + /* "ml3.pyx":57 + * for l, s in enumerate(successes): + * prob = s - failures[l] + * if prob > probs[i]: # <<<<<<<<<<<<<< + * probs[i] = prob + * parent_dists[i] = dists[l] + */ + __pyx_t_29 = __pyx_v_i; + if (__pyx_t_29 < 0) __pyx_t_29 += __pyx_pybuffernd_probs.diminfo[0].shape; + __pyx_t_4 = PyFloat_FromDouble((*__Pyx_BufPtrStrided1d(__pyx_t_3ml3_DTYPE_t *, __pyx_pybuffernd_probs.rcbuffer->pybuffer.buf, __pyx_t_29, __pyx_pybuffernd_probs.diminfo[0].strides))); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 57; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __pyx_t_3 = PyObject_RichCompare(__pyx_v_prob, __pyx_t_4, Py_GT); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 57; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __pyx_t_30 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_30 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 57; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + if (__pyx_t_30) { + + /* "ml3.pyx":58 + * prob = s - failures[l] + * if prob > probs[i]: + * probs[i] = prob # <<<<<<<<<<<<<< + * parent_dists[i] = dists[l] + * parent_dts[i] = dts[l] + */ + __pyx_t_24 = __pyx_PyFloat_AsDouble(__pyx_v_prob); if (unlikely((__pyx_t_24 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 58; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_31 = __pyx_v_i; + if (__pyx_t_31 < 0) __pyx_t_31 += __pyx_pybuffernd_probs.diminfo[0].shape; + *__Pyx_BufPtrStrided1d(__pyx_t_3ml3_DTYPE_t *, __pyx_pybuffernd_probs.rcbuffer->pybuffer.buf, __pyx_t_31, __pyx_pybuffernd_probs.diminfo[0].strides) = __pyx_t_24; + + /* "ml3.pyx":59 + * if prob > probs[i]: + * probs[i] = prob + * parent_dists[i] = dists[l] # <<<<<<<<<<<<<< + * parent_dts[i] = dts[l] + * # probs_fail[i] = failures[l] + */ + __pyx_t_3 = __Pyx_GetItemInt_List(__pyx_v_dists, __pyx_v_l, int, 1, __Pyx_PyInt_From_int, 1, 1, 0); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 59; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_24 = __pyx_PyFloat_AsDouble(__pyx_t_3); if (unlikely((__pyx_t_24 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 59; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __pyx_t_32 = __pyx_v_i; + if (__pyx_t_32 < 0) __pyx_t_32 += __pyx_pybuffernd_parent_dists.diminfo[0].shape; + *__Pyx_BufPtrStrided1d(__pyx_t_3ml3_DTYPE_t *, __pyx_pybuffernd_parent_dists.rcbuffer->pybuffer.buf, __pyx_t_32, __pyx_pybuffernd_parent_dists.diminfo[0].strides) = __pyx_t_24; + + /* "ml3.pyx":60 + * probs[i] = prob + * parent_dists[i] = dists[l] + * parent_dts[i] = dts[l] # <<<<<<<<<<<<<< + * # probs_fail[i] = failures[l] + * + */ + __pyx_t_3 = __Pyx_GetItemInt_List(__pyx_v_dts, __pyx_v_l, int, 1, __Pyx_PyInt_From_int, 1, 1, 0); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 60; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_24 = __pyx_PyFloat_AsDouble(__pyx_t_3); if (unlikely((__pyx_t_24 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 60; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __pyx_t_33 = __pyx_v_i; + if (__pyx_t_33 < 0) __pyx_t_33 += __pyx_pybuffernd_parent_dts.diminfo[0].shape; + *__Pyx_BufPtrStrided1d(__pyx_t_3ml3_DTYPE_t *, __pyx_pybuffernd_parent_dts.rcbuffer->pybuffer.buf, __pyx_t_33, __pyx_pybuffernd_parent_dts.diminfo[0].strides) = __pyx_t_24; + goto __pyx_L23; + } + __pyx_L23:; + + /* "ml3.pyx":55 + * # probs[i] = max(s - failures[l] for l, s in enumerate(successes)) + * probs[i] = float("-inf") + * for l, s in enumerate(successes): # <<<<<<<<<<<<<< + * prob = s - failures[l] + * if prob > probs[i]: + */ + } + __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; + } + __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; + + /* "ml3.pyx":64 + * + * # calculate log likelihood + * ll = probs_fail.sum() # add probability that all edges to all victims fail # <<<<<<<<<<<<<< + * + * # print 'probs', probs + */ + __pyx_t_5 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_probs_fail), __pyx_n_s_sum); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 64; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_5); + __pyx_t_3 = NULL; + if (CYTHON_COMPILING_IN_CPYTHON && likely(PyMethod_Check(__pyx_t_5))) { + __pyx_t_3 = PyMethod_GET_SELF(__pyx_t_5); + if (likely(__pyx_t_3)) { + PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_5); + __Pyx_INCREF(__pyx_t_3); + __Pyx_INCREF(function); + __Pyx_DECREF_SET(__pyx_t_5, function); + } + } + if (__pyx_t_3) { + __pyx_t_6 = __Pyx_PyObject_CallOneArg(__pyx_t_5, __pyx_t_3); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 64; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + } else { + __pyx_t_6 = __Pyx_PyObject_CallNoArg(__pyx_t_5); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 64; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + __Pyx_GOTREF(__pyx_t_6); + __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; + __pyx_t_24 = __pyx_PyFloat_AsDouble(__pyx_t_6); if (unlikely((__pyx_t_24 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 64; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; + __pyx_v_ll = __pyx_t_24; + + /* "ml3.pyx":67 + * + * # print 'probs', probs + * max_beta_add = float('-inf') # <<<<<<<<<<<<<< + * # iterate over all victim nodes to find the optimal threshold + * for beta in np.arange(0.01, 1, .01): + */ + __pyx_t_28 = __Pyx_PyObject_AsDouble(__pyx_kp_s_inf); if (unlikely(__pyx_t_28 == ((double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 67; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_v_max_beta_add = __pyx_t_28; + + /* "ml3.pyx":69 + * max_beta_add = float('-inf') + * # iterate over all victim nodes to find the optimal threshold + * for beta in np.arange(0.01, 1, .01): # <<<<<<<<<<<<<< + * thresh = log(beta/(3012.*(1.-beta))) + * seeds = probs<thresh + */ + __pyx_t_6 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_6); + __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_n_s_arange); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_5); + __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; + __pyx_t_6 = __Pyx_PyObject_Call(__pyx_t_5, __pyx_tuple_, NULL); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_6); + __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; + if (likely(PyList_CheckExact(__pyx_t_6)) || PyTuple_CheckExact(__pyx_t_6)) { + __pyx_t_5 = __pyx_t_6; __Pyx_INCREF(__pyx_t_5); __pyx_t_1 = 0; + __pyx_t_34 = NULL; + } else { + __pyx_t_1 = -1; __pyx_t_5 = PyObject_GetIter(__pyx_t_6); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_5); + __pyx_t_34 = Py_TYPE(__pyx_t_5)->tp_iternext; if (unlikely(!__pyx_t_34)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; + for (;;) { + if (likely(!__pyx_t_34)) { + if (likely(PyList_CheckExact(__pyx_t_5))) { + if (__pyx_t_1 >= PyList_GET_SIZE(__pyx_t_5)) break; + #if CYTHON_COMPILING_IN_CPYTHON + __pyx_t_6 = PyList_GET_ITEM(__pyx_t_5, __pyx_t_1); __Pyx_INCREF(__pyx_t_6); __pyx_t_1++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #else + __pyx_t_6 = PySequence_ITEM(__pyx_t_5, __pyx_t_1); __pyx_t_1++; if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #endif + } else { + if (__pyx_t_1 >= PyTuple_GET_SIZE(__pyx_t_5)) break; + #if CYTHON_COMPILING_IN_CPYTHON + __pyx_t_6 = PyTuple_GET_ITEM(__pyx_t_5, __pyx_t_1); __Pyx_INCREF(__pyx_t_6); __pyx_t_1++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #else + __pyx_t_6 = PySequence_ITEM(__pyx_t_5, __pyx_t_1); __pyx_t_1++; if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #endif + } + } else { + __pyx_t_6 = __pyx_t_34(__pyx_t_5); + if (unlikely(!__pyx_t_6)) { + PyObject* exc_type = PyErr_Occurred(); + if (exc_type) { + if (likely(exc_type == PyExc_StopIteration || PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear(); + else {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + break; + } + __Pyx_GOTREF(__pyx_t_6); + } + __pyx_t_24 = __pyx_PyFloat_AsDouble(__pyx_t_6); if (unlikely((__pyx_t_24 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; + __pyx_v_beta = __pyx_t_24; + + /* "ml3.pyx":70 + * # iterate over all victim nodes to find the optimal threshold + * for beta in np.arange(0.01, 1, .01): + * thresh = log(beta/(3012.*(1.-beta))) # <<<<<<<<<<<<<< + * seeds = probs<thresh + * non_seeds = probs>=thresh + */ + __pyx_v_thresh = log((__pyx_v_beta / (3012. * (1. - __pyx_v_beta)))); + + /* "ml3.pyx":71 + * for beta in np.arange(0.01, 1, .01): + * thresh = log(beta/(3012.*(1.-beta))) + * seeds = probs<thresh # <<<<<<<<<<<<<< + * non_seeds = probs>=thresh + * roots = n_roots + sum(seeds) + */ + __pyx_t_6 = PyFloat_FromDouble(__pyx_v_thresh); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 71; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_6); + __pyx_t_3 = PyObject_RichCompare(((PyObject *)__pyx_v_probs), __pyx_t_6, Py_LT); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 71; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; + __Pyx_XDECREF_SET(__pyx_v_seeds, __pyx_t_3); + __pyx_t_3 = 0; + + /* "ml3.pyx":72 + * thresh = log(beta/(3012.*(1.-beta))) + * seeds = probs<thresh + * non_seeds = probs>=thresh # <<<<<<<<<<<<<< + * roots = n_roots + sum(seeds) + * + */ + __pyx_t_3 = PyFloat_FromDouble(__pyx_v_thresh); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 72; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_6 = PyObject_RichCompare(((PyObject *)__pyx_v_probs), __pyx_t_3, Py_GE); __Pyx_XGOTREF(__pyx_t_6); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 72; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __Pyx_XDECREF_SET(__pyx_v_non_seeds, __pyx_t_6); + __pyx_t_6 = 0; + + /* "ml3.pyx":73 + * seeds = probs<thresh + * non_seeds = probs>=thresh + * roots = n_roots + sum(seeds) # <<<<<<<<<<<<<< + * + * beta_add = 0. + */ + __pyx_t_6 = __Pyx_PyInt_From_int(__pyx_v_n_roots); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 73; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_6); + __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 73; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __Pyx_INCREF(__pyx_v_seeds); + PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_v_seeds); + __Pyx_GIVEREF(__pyx_v_seeds); + __pyx_t_4 = __Pyx_PyObject_Call(__pyx_builtin_sum, __pyx_t_3, NULL); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 73; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __pyx_t_3 = PyNumber_Add(__pyx_t_6, __pyx_t_4); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 73; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __pyx_t_11 = __Pyx_PyInt_As_int(__pyx_t_3); if (unlikely((__pyx_t_11 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 73; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __pyx_v_roots = __pyx_t_11; + + /* "ml3.pyx":75 + * roots = n_roots + sum(seeds) + * + * beta_add = 0. # <<<<<<<<<<<<<< + * # add probability for realized edges and subtract probability these edges fail + * beta_add += (probs[non_seeds]).sum() + */ + __pyx_v_beta_add = 0.; + + /* "ml3.pyx":77 + * beta_add = 0. + * # add probability for realized edges and subtract probability these edges fail + * beta_add += (probs[non_seeds]).sum() # <<<<<<<<<<<<<< + * # add probability for the seeds and non-seeds + * beta_add += roots * log(beta/3012.) + sum(non_seeds) * log(1. - beta) + */ + __pyx_t_3 = PyFloat_FromDouble(__pyx_v_beta_add); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 77; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_6 = PyObject_GetItem(((PyObject *)__pyx_v_probs), __pyx_v_non_seeds); if (unlikely(__pyx_t_6 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 77; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; + __Pyx_GOTREF(__pyx_t_6); + __pyx_t_15 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_n_s_sum); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 77; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_15); + __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; + __pyx_t_6 = NULL; + if (CYTHON_COMPILING_IN_CPYTHON && likely(PyMethod_Check(__pyx_t_15))) { + __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_15); + if (likely(__pyx_t_6)) { + PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_15); + __Pyx_INCREF(__pyx_t_6); + __Pyx_INCREF(function); + __Pyx_DECREF_SET(__pyx_t_15, function); + } + } + if (__pyx_t_6) { + __pyx_t_4 = __Pyx_PyObject_CallOneArg(__pyx_t_15, __pyx_t_6); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 77; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; + } else { + __pyx_t_4 = __Pyx_PyObject_CallNoArg(__pyx_t_15); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 77; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + __Pyx_GOTREF(__pyx_t_4); + __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0; + __pyx_t_15 = PyNumber_InPlaceAdd(__pyx_t_3, __pyx_t_4); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 77; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_15); + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __pyx_t_24 = __pyx_PyFloat_AsDouble(__pyx_t_15); if (unlikely((__pyx_t_24 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 77; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0; + __pyx_v_beta_add = __pyx_t_24; + + /* "ml3.pyx":79 + * beta_add += (probs[non_seeds]).sum() + * # add probability for the seeds and non-seeds + * beta_add += roots * log(beta/3012.) + sum(non_seeds) * log(1. - beta) # <<<<<<<<<<<<<< + * + * if beta_add > max_beta_add: + */ + __pyx_t_15 = PyFloat_FromDouble(__pyx_v_beta_add); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 79; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_15); + __pyx_t_4 = PyFloat_FromDouble((__pyx_v_roots * log((__pyx_v_beta / 3012.)))); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 79; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 79; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __Pyx_INCREF(__pyx_v_non_seeds); + PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_v_non_seeds); + __Pyx_GIVEREF(__pyx_v_non_seeds); + __pyx_t_6 = __Pyx_PyObject_Call(__pyx_builtin_sum, __pyx_t_3, NULL); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 79; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_6); + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __pyx_t_3 = PyFloat_FromDouble(log((1. - __pyx_v_beta))); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 79; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_16 = PyNumber_Multiply(__pyx_t_6, __pyx_t_3); if (unlikely(!__pyx_t_16)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 79; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_16); + __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __pyx_t_3 = PyNumber_Add(__pyx_t_4, __pyx_t_16); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 79; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __Pyx_DECREF(__pyx_t_16); __pyx_t_16 = 0; + __pyx_t_16 = PyNumber_InPlaceAdd(__pyx_t_15, __pyx_t_3); if (unlikely(!__pyx_t_16)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 79; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_16); + __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0; + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __pyx_t_24 = __pyx_PyFloat_AsDouble(__pyx_t_16); if (unlikely((__pyx_t_24 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 79; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_16); __pyx_t_16 = 0; + __pyx_v_beta_add = __pyx_t_24; + + /* "ml3.pyx":81 + * beta_add += roots * log(beta/3012.) + sum(non_seeds) * log(1. - beta) + * + * if beta_add > max_beta_add: # <<<<<<<<<<<<<< + * max_beta = beta + * max_roots = roots + */ + __pyx_t_30 = ((__pyx_v_beta_add > __pyx_v_max_beta_add) != 0); + if (__pyx_t_30) { + + /* "ml3.pyx":82 + * + * if beta_add > max_beta_add: + * max_beta = beta # <<<<<<<<<<<<<< + * max_roots = roots + * max_beta_add = beta_add + */ + __pyx_v_max_beta = __pyx_v_beta; + + /* "ml3.pyx":83 + * if beta_add > max_beta_add: + * max_beta = beta + * max_roots = roots # <<<<<<<<<<<<<< + * max_beta_add = beta_add + * # print 'beta:', max_beta, 'add:', max_beta_add, 'roots:', max_roots + */ + __pyx_v_max_roots = __pyx_v_roots; + + /* "ml3.pyx":84 + * max_beta = beta + * max_roots = roots + * max_beta_add = beta_add # <<<<<<<<<<<<<< + * # print 'beta:', max_beta, 'add:', max_beta_add, 'roots:', max_roots + * + */ + __pyx_v_max_beta_add = __pyx_v_beta_add; + goto __pyx_L26; + } + __pyx_L26:; + + /* "ml3.pyx":69 + * max_beta_add = float('-inf') + * # iterate over all victim nodes to find the optimal threshold + * for beta in np.arange(0.01, 1, .01): # <<<<<<<<<<<<<< + * thresh = log(beta/(3012.*(1.-beta))) + * seeds = probs<thresh + */ + } + __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; + + /* "ml3.pyx":87 + * # print 'beta:', max_beta, 'add:', max_beta_add, 'roots:', max_roots + * + * ll += max_beta_add # <<<<<<<<<<<<<< + * roots = max_roots + * beta = max_beta + */ + __pyx_v_ll = (__pyx_v_ll + __pyx_v_max_beta_add); + + /* "ml3.pyx":88 + * + * ll += max_beta_add + * roots = max_roots # <<<<<<<<<<<<<< + * beta = max_beta + * # print n_nodes, n_roots, n_victims, max_i, roots + */ + __pyx_v_roots = __pyx_v_max_roots; + + /* "ml3.pyx":89 + * ll += max_beta_add + * roots = max_roots + * beta = max_beta # <<<<<<<<<<<<<< + * # print n_nodes, n_roots, n_victims, max_i, roots + * return (beta, roots, ll) + */ + __pyx_v_beta = __pyx_v_max_beta; + + /* "ml3.pyx":91 + * beta = max_beta + * # print n_nodes, n_roots, n_victims, max_i, roots + * return (beta, roots, ll) # <<<<<<<<<<<<<< + */ + __Pyx_XDECREF(__pyx_r); + __pyx_t_5 = PyFloat_FromDouble(__pyx_v_beta); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 91; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_5); + __pyx_t_16 = __Pyx_PyInt_From_int(__pyx_v_roots); if (unlikely(!__pyx_t_16)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 91; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_16); + __pyx_t_3 = PyFloat_FromDouble(__pyx_v_ll); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 91; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_15 = PyTuple_New(3); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 91; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_15); + PyTuple_SET_ITEM(__pyx_t_15, 0, __pyx_t_5); + __Pyx_GIVEREF(__pyx_t_5); + PyTuple_SET_ITEM(__pyx_t_15, 1, __pyx_t_16); + __Pyx_GIVEREF(__pyx_t_16); + PyTuple_SET_ITEM(__pyx_t_15, 2, __pyx_t_3); + __Pyx_GIVEREF(__pyx_t_3); + __pyx_t_5 = 0; + __pyx_t_16 = 0; + __pyx_t_3 = 0; + __pyx_r = __pyx_t_15; + __pyx_t_15 = 0; + goto __pyx_L0; + + /* "ml3.pyx":27 + * return result + * + * def ml3(dict root_victims, dict victims, dict non_victims, DTYPE_t age, # <<<<<<<<<<<<<< + * DTYPE_t alpha, DTYPE_t delta): + * cdef: + */ + + /* function exit code */ + __pyx_L1_error:; + __Pyx_XDECREF(__pyx_t_3); + __Pyx_XDECREF(__pyx_t_4); + __Pyx_XDECREF(__pyx_t_5); + __Pyx_XDECREF(__pyx_t_6); + __Pyx_XDECREF(__pyx_t_15); + __Pyx_XDECREF(__pyx_t_16); + __Pyx_XDECREF(__pyx_t_17); + __Pyx_XDECREF(__pyx_t_18); + __Pyx_XDECREF(__pyx_t_19); + __Pyx_XDECREF(__pyx_t_20); + __Pyx_XDECREF(__pyx_t_21); + { PyObject *__pyx_type, *__pyx_value, *__pyx_tb; + __Pyx_ErrFetch(&__pyx_type, &__pyx_value, &__pyx_tb); + __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_parent_dists.rcbuffer->pybuffer); + __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_parent_dts.rcbuffer->pybuffer); + __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_probs.rcbuffer->pybuffer); + __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_probs_fail.rcbuffer->pybuffer); + __Pyx_ErrRestore(__pyx_type, __pyx_value, __pyx_tb);} + __Pyx_AddTraceback("ml3.ml3", __pyx_clineno, __pyx_lineno, __pyx_filename); + __pyx_r = NULL; + goto __pyx_L2; + __pyx_L0:; + __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_parent_dists.rcbuffer->pybuffer); + __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_parent_dts.rcbuffer->pybuffer); + __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_probs.rcbuffer->pybuffer); + __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_probs_fail.rcbuffer->pybuffer); + __pyx_L2:; + __Pyx_XDECREF(__pyx_v_parents); + __Pyx_XDECREF(__pyx_v_failures); + __Pyx_XDECREF(__pyx_v_successes); + __Pyx_XDECREF((PyObject *)__pyx_v_probs); + __Pyx_XDECREF((PyObject *)__pyx_v_probs_fail); + __Pyx_XDECREF((PyObject *)__pyx_v_parent_dists); + __Pyx_XDECREF((PyObject *)__pyx_v_parent_dts); + __Pyx_XDECREF(__pyx_v_dists); + __Pyx_XDECREF(__pyx_v_dts); + __Pyx_XDECREF(__pyx_v_s); + __Pyx_XDECREF(__pyx_v_prob); + __Pyx_XDECREF(__pyx_v_seeds); + __Pyx_XDECREF(__pyx_v_non_seeds); + __Pyx_XDECREF(__pyx_v_prnt); + __Pyx_XDECREF(__pyx_v_w1); + __Pyx_XDECREF(__pyx_v_w2); + __Pyx_XDECREF(__pyx_v_w3); + __Pyx_XGIVEREF(__pyx_r); + __Pyx_RefNannyFinishContext(); + return __pyx_r; +} + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":197 + * # experimental exception made for __getbuffer__ and __releasebuffer__ + * # -- the details of this may change. + * def __getbuffer__(ndarray self, Py_buffer* info, int flags): # <<<<<<<<<<<<<< + * # This implementation of getbuffer is geared towards Cython + * # requirements, and does not yet fullfill the PEP. + */ + +/* Python wrapper */ +static CYTHON_UNUSED int __pyx_pw_5numpy_7ndarray_1__getbuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /*proto*/ +static CYTHON_UNUSED int __pyx_pw_5numpy_7ndarray_1__getbuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags) { + int __pyx_r; + __Pyx_RefNannyDeclarations + __Pyx_RefNannySetupContext("__getbuffer__ (wrapper)", 0); + __pyx_r = __pyx_pf_5numpy_7ndarray___getbuffer__(((PyArrayObject *)__pyx_v_self), ((Py_buffer *)__pyx_v_info), ((int)__pyx_v_flags)); + + /* function exit code */ + __Pyx_RefNannyFinishContext(); + return __pyx_r; +} + +static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags) { + int __pyx_v_copy_shape; + int __pyx_v_i; + int __pyx_v_ndim; + int __pyx_v_endian_detector; + int __pyx_v_little_endian; + int __pyx_v_t; + char *__pyx_v_f; + PyArray_Descr *__pyx_v_descr = 0; + int __pyx_v_offset; + int __pyx_v_hasfields; + int __pyx_r; + __Pyx_RefNannyDeclarations + int __pyx_t_1; + int __pyx_t_2; + PyObject *__pyx_t_3 = NULL; + int __pyx_t_4; + int __pyx_t_5; + PyObject *__pyx_t_6 = NULL; + char *__pyx_t_7; + int __pyx_lineno = 0; + const char *__pyx_filename = NULL; + int __pyx_clineno = 0; + __Pyx_RefNannySetupContext("__getbuffer__", 0); + if (__pyx_v_info != NULL) { + __pyx_v_info->obj = Py_None; __Pyx_INCREF(Py_None); + __Pyx_GIVEREF(__pyx_v_info->obj); + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":203 + * # of flags + * + * if info == NULL: return # <<<<<<<<<<<<<< + * + * cdef int copy_shape, i, ndim + */ + __pyx_t_1 = ((__pyx_v_info == NULL) != 0); + if (__pyx_t_1) { + __pyx_r = 0; + goto __pyx_L0; + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":206 + * + * cdef int copy_shape, i, ndim + * cdef int endian_detector = 1 # <<<<<<<<<<<<<< + * cdef bint little_endian = ((<char*>&endian_detector)[0] != 0) + * + */ + __pyx_v_endian_detector = 1; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":207 + * cdef int copy_shape, i, ndim + * cdef int endian_detector = 1 + * cdef bint little_endian = ((<char*>&endian_detector)[0] != 0) # <<<<<<<<<<<<<< + * + * ndim = PyArray_NDIM(self) + */ + __pyx_v_little_endian = ((((char *)(&__pyx_v_endian_detector))[0]) != 0); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":209 + * cdef bint little_endian = ((<char*>&endian_detector)[0] != 0) + * + * ndim = PyArray_NDIM(self) # <<<<<<<<<<<<<< + * + * if sizeof(npy_intp) != sizeof(Py_ssize_t): + */ + __pyx_v_ndim = PyArray_NDIM(__pyx_v_self); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":211 + * ndim = PyArray_NDIM(self) + * + * if sizeof(npy_intp) != sizeof(Py_ssize_t): # <<<<<<<<<<<<<< + * copy_shape = 1 + * else: + */ + __pyx_t_1 = (((sizeof(npy_intp)) != (sizeof(Py_ssize_t))) != 0); + if (__pyx_t_1) { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":212 + * + * if sizeof(npy_intp) != sizeof(Py_ssize_t): + * copy_shape = 1 # <<<<<<<<<<<<<< + * else: + * copy_shape = 0 + */ + __pyx_v_copy_shape = 1; + goto __pyx_L4; + } + /*else*/ { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":214 + * copy_shape = 1 + * else: + * copy_shape = 0 # <<<<<<<<<<<<<< + * + * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) + */ + __pyx_v_copy_shape = 0; + } + __pyx_L4:; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":216 + * copy_shape = 0 + * + * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) # <<<<<<<<<<<<<< + * and not PyArray_CHKFLAGS(self, NPY_C_CONTIGUOUS)): + * raise ValueError(u"ndarray is not C contiguous") + */ + __pyx_t_2 = (((__pyx_v_flags & PyBUF_C_CONTIGUOUS) == PyBUF_C_CONTIGUOUS) != 0); + if (__pyx_t_2) { + } else { + __pyx_t_1 = __pyx_t_2; + goto __pyx_L6_bool_binop_done; + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":217 + * + * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) + * and not PyArray_CHKFLAGS(self, NPY_C_CONTIGUOUS)): # <<<<<<<<<<<<<< + * raise ValueError(u"ndarray is not C contiguous") + * + */ + __pyx_t_2 = ((!(PyArray_CHKFLAGS(__pyx_v_self, NPY_C_CONTIGUOUS) != 0)) != 0); + __pyx_t_1 = __pyx_t_2; + __pyx_L6_bool_binop_done:; + if (__pyx_t_1) { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":218 + * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) + * and not PyArray_CHKFLAGS(self, NPY_C_CONTIGUOUS)): + * raise ValueError(u"ndarray is not C contiguous") # <<<<<<<<<<<<<< + * + * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) + */ + __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__2, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 218; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __Pyx_Raise(__pyx_t_3, 0, 0, 0); + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + {__pyx_filename = __pyx_f[1]; __pyx_lineno = 218; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":220 + * raise ValueError(u"ndarray is not C contiguous") + * + * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) # <<<<<<<<<<<<<< + * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)): + * raise ValueError(u"ndarray is not Fortran contiguous") + */ + __pyx_t_2 = (((__pyx_v_flags & PyBUF_F_CONTIGUOUS) == PyBUF_F_CONTIGUOUS) != 0); + if (__pyx_t_2) { + } else { + __pyx_t_1 = __pyx_t_2; + goto __pyx_L9_bool_binop_done; + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":221 + * + * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) + * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)): # <<<<<<<<<<<<<< + * raise ValueError(u"ndarray is not Fortran contiguous") + * + */ + __pyx_t_2 = ((!(PyArray_CHKFLAGS(__pyx_v_self, NPY_F_CONTIGUOUS) != 0)) != 0); + __pyx_t_1 = __pyx_t_2; + __pyx_L9_bool_binop_done:; + if (__pyx_t_1) { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":222 + * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) + * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)): + * raise ValueError(u"ndarray is not Fortran contiguous") # <<<<<<<<<<<<<< + * + * info.buf = PyArray_DATA(self) + */ + __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__3, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 222; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __Pyx_Raise(__pyx_t_3, 0, 0, 0); + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + {__pyx_filename = __pyx_f[1]; __pyx_lineno = 222; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":224 + * raise ValueError(u"ndarray is not Fortran contiguous") + * + * info.buf = PyArray_DATA(self) # <<<<<<<<<<<<<< + * info.ndim = ndim + * if copy_shape: + */ + __pyx_v_info->buf = PyArray_DATA(__pyx_v_self); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":225 + * + * info.buf = PyArray_DATA(self) + * info.ndim = ndim # <<<<<<<<<<<<<< + * if copy_shape: + * # Allocate new buffer for strides and shape info. + */ + __pyx_v_info->ndim = __pyx_v_ndim; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":226 + * info.buf = PyArray_DATA(self) + * info.ndim = ndim + * if copy_shape: # <<<<<<<<<<<<<< + * # Allocate new buffer for strides and shape info. + * # This is allocated as one block, strides first. + */ + __pyx_t_1 = (__pyx_v_copy_shape != 0); + if (__pyx_t_1) { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":229 + * # Allocate new buffer for strides and shape info. + * # This is allocated as one block, strides first. + * info.strides = <Py_ssize_t*>stdlib.malloc(sizeof(Py_ssize_t) * <size_t>ndim * 2) # <<<<<<<<<<<<<< + * info.shape = info.strides + ndim + * for i in range(ndim): + */ + __pyx_v_info->strides = ((Py_ssize_t *)malloc((((sizeof(Py_ssize_t)) * ((size_t)__pyx_v_ndim)) * 2))); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":230 + * # This is allocated as one block, strides first. + * info.strides = <Py_ssize_t*>stdlib.malloc(sizeof(Py_ssize_t) * <size_t>ndim * 2) + * info.shape = info.strides + ndim # <<<<<<<<<<<<<< + * for i in range(ndim): + * info.strides[i] = PyArray_STRIDES(self)[i] + */ + __pyx_v_info->shape = (__pyx_v_info->strides + __pyx_v_ndim); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":231 + * info.strides = <Py_ssize_t*>stdlib.malloc(sizeof(Py_ssize_t) * <size_t>ndim * 2) + * info.shape = info.strides + ndim + * for i in range(ndim): # <<<<<<<<<<<<<< + * info.strides[i] = PyArray_STRIDES(self)[i] + * info.shape[i] = PyArray_DIMS(self)[i] + */ + __pyx_t_4 = __pyx_v_ndim; + for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) { + __pyx_v_i = __pyx_t_5; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":232 + * info.shape = info.strides + ndim + * for i in range(ndim): + * info.strides[i] = PyArray_STRIDES(self)[i] # <<<<<<<<<<<<<< + * info.shape[i] = PyArray_DIMS(self)[i] + * else: + */ + (__pyx_v_info->strides[__pyx_v_i]) = (PyArray_STRIDES(__pyx_v_self)[__pyx_v_i]); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":233 + * for i in range(ndim): + * info.strides[i] = PyArray_STRIDES(self)[i] + * info.shape[i] = PyArray_DIMS(self)[i] # <<<<<<<<<<<<<< + * else: + * info.strides = <Py_ssize_t*>PyArray_STRIDES(self) + */ + (__pyx_v_info->shape[__pyx_v_i]) = (PyArray_DIMS(__pyx_v_self)[__pyx_v_i]); + } + goto __pyx_L11; + } + /*else*/ { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":235 + * info.shape[i] = PyArray_DIMS(self)[i] + * else: + * info.strides = <Py_ssize_t*>PyArray_STRIDES(self) # <<<<<<<<<<<<<< + * info.shape = <Py_ssize_t*>PyArray_DIMS(self) + * info.suboffsets = NULL + */ + __pyx_v_info->strides = ((Py_ssize_t *)PyArray_STRIDES(__pyx_v_self)); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":236 + * else: + * info.strides = <Py_ssize_t*>PyArray_STRIDES(self) + * info.shape = <Py_ssize_t*>PyArray_DIMS(self) # <<<<<<<<<<<<<< + * info.suboffsets = NULL + * info.itemsize = PyArray_ITEMSIZE(self) + */ + __pyx_v_info->shape = ((Py_ssize_t *)PyArray_DIMS(__pyx_v_self)); + } + __pyx_L11:; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":237 + * info.strides = <Py_ssize_t*>PyArray_STRIDES(self) + * info.shape = <Py_ssize_t*>PyArray_DIMS(self) + * info.suboffsets = NULL # <<<<<<<<<<<<<< + * info.itemsize = PyArray_ITEMSIZE(self) + * info.readonly = not PyArray_ISWRITEABLE(self) + */ + __pyx_v_info->suboffsets = NULL; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":238 + * info.shape = <Py_ssize_t*>PyArray_DIMS(self) + * info.suboffsets = NULL + * info.itemsize = PyArray_ITEMSIZE(self) # <<<<<<<<<<<<<< + * info.readonly = not PyArray_ISWRITEABLE(self) + * + */ + __pyx_v_info->itemsize = PyArray_ITEMSIZE(__pyx_v_self); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":239 + * info.suboffsets = NULL + * info.itemsize = PyArray_ITEMSIZE(self) + * info.readonly = not PyArray_ISWRITEABLE(self) # <<<<<<<<<<<<<< + * + * cdef int t + */ + __pyx_v_info->readonly = (!(PyArray_ISWRITEABLE(__pyx_v_self) != 0)); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":242 + * + * cdef int t + * cdef char* f = NULL # <<<<<<<<<<<<<< + * cdef dtype descr = self.descr + * cdef list stack + */ + __pyx_v_f = NULL; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":243 + * cdef int t + * cdef char* f = NULL + * cdef dtype descr = self.descr # <<<<<<<<<<<<<< + * cdef list stack + * cdef int offset + */ + __pyx_t_3 = ((PyObject *)__pyx_v_self->descr); + __Pyx_INCREF(__pyx_t_3); + __pyx_v_descr = ((PyArray_Descr *)__pyx_t_3); + __pyx_t_3 = 0; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":247 + * cdef int offset + * + * cdef bint hasfields = PyDataType_HASFIELDS(descr) # <<<<<<<<<<<<<< + * + * if not hasfields and not copy_shape: + */ + __pyx_v_hasfields = PyDataType_HASFIELDS(__pyx_v_descr); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":249 + * cdef bint hasfields = PyDataType_HASFIELDS(descr) + * + * if not hasfields and not copy_shape: # <<<<<<<<<<<<<< + * # do not call releasebuffer + * info.obj = None + */ + __pyx_t_2 = ((!(__pyx_v_hasfields != 0)) != 0); + if (__pyx_t_2) { + } else { + __pyx_t_1 = __pyx_t_2; + goto __pyx_L15_bool_binop_done; + } + __pyx_t_2 = ((!(__pyx_v_copy_shape != 0)) != 0); + __pyx_t_1 = __pyx_t_2; + __pyx_L15_bool_binop_done:; + if (__pyx_t_1) { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":251 + * if not hasfields and not copy_shape: + * # do not call releasebuffer + * info.obj = None # <<<<<<<<<<<<<< + * else: + * # need to call releasebuffer + */ + __Pyx_INCREF(Py_None); + __Pyx_GIVEREF(Py_None); + __Pyx_GOTREF(__pyx_v_info->obj); + __Pyx_DECREF(__pyx_v_info->obj); + __pyx_v_info->obj = Py_None; + goto __pyx_L14; + } + /*else*/ { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":254 + * else: + * # need to call releasebuffer + * info.obj = self # <<<<<<<<<<<<<< + * + * if not hasfields: + */ + __Pyx_INCREF(((PyObject *)__pyx_v_self)); + __Pyx_GIVEREF(((PyObject *)__pyx_v_self)); + __Pyx_GOTREF(__pyx_v_info->obj); + __Pyx_DECREF(__pyx_v_info->obj); + __pyx_v_info->obj = ((PyObject *)__pyx_v_self); + } + __pyx_L14:; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":256 + * info.obj = self + * + * if not hasfields: # <<<<<<<<<<<<<< + * t = descr.type_num + * if ((descr.byteorder == c'>' and little_endian) or + */ + __pyx_t_1 = ((!(__pyx_v_hasfields != 0)) != 0); + if (__pyx_t_1) { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":257 + * + * if not hasfields: + * t = descr.type_num # <<<<<<<<<<<<<< + * if ((descr.byteorder == c'>' and little_endian) or + * (descr.byteorder == c'<' and not little_endian)): + */ + __pyx_t_4 = __pyx_v_descr->type_num; + __pyx_v_t = __pyx_t_4; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":258 + * if not hasfields: + * t = descr.type_num + * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< + * (descr.byteorder == c'<' and not little_endian)): + * raise ValueError(u"Non-native byte order not supported") + */ + __pyx_t_2 = ((__pyx_v_descr->byteorder == '>') != 0); + if (!__pyx_t_2) { + goto __pyx_L20_next_or; + } else { + } + __pyx_t_2 = (__pyx_v_little_endian != 0); + if (!__pyx_t_2) { + } else { + __pyx_t_1 = __pyx_t_2; + goto __pyx_L19_bool_binop_done; + } + __pyx_L20_next_or:; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":259 + * t = descr.type_num + * if ((descr.byteorder == c'>' and little_endian) or + * (descr.byteorder == c'<' and not little_endian)): # <<<<<<<<<<<<<< + * raise ValueError(u"Non-native byte order not supported") + * if t == NPY_BYTE: f = "b" + */ + __pyx_t_2 = ((__pyx_v_descr->byteorder == '<') != 0); + if (__pyx_t_2) { + } else { + __pyx_t_1 = __pyx_t_2; + goto __pyx_L19_bool_binop_done; + } + __pyx_t_2 = ((!(__pyx_v_little_endian != 0)) != 0); + __pyx_t_1 = __pyx_t_2; + __pyx_L19_bool_binop_done:; + if (__pyx_t_1) { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":260 + * if ((descr.byteorder == c'>' and little_endian) or + * (descr.byteorder == c'<' and not little_endian)): + * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<< + * if t == NPY_BYTE: f = "b" + * elif t == NPY_UBYTE: f = "B" + */ + __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__4, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 260; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __Pyx_Raise(__pyx_t_3, 0, 0, 0); + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + {__pyx_filename = __pyx_f[1]; __pyx_lineno = 260; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":277 + * elif t == NPY_CDOUBLE: f = "Zd" + * elif t == NPY_CLONGDOUBLE: f = "Zg" + * elif t == NPY_OBJECT: f = "O" # <<<<<<<<<<<<<< + * else: + * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) + */ + switch (__pyx_v_t) { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":261 + * (descr.byteorder == c'<' and not little_endian)): + * raise ValueError(u"Non-native byte order not supported") + * if t == NPY_BYTE: f = "b" # <<<<<<<<<<<<<< + * elif t == NPY_UBYTE: f = "B" + * elif t == NPY_SHORT: f = "h" + */ + case NPY_BYTE: + __pyx_v_f = __pyx_k_b; + break; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":262 + * raise ValueError(u"Non-native byte order not supported") + * if t == NPY_BYTE: f = "b" + * elif t == NPY_UBYTE: f = "B" # <<<<<<<<<<<<<< + * elif t == NPY_SHORT: f = "h" + * elif t == NPY_USHORT: f = "H" + */ + case NPY_UBYTE: + __pyx_v_f = __pyx_k_B; + break; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":263 + * if t == NPY_BYTE: f = "b" + * elif t == NPY_UBYTE: f = "B" + * elif t == NPY_SHORT: f = "h" # <<<<<<<<<<<<<< + * elif t == NPY_USHORT: f = "H" + * elif t == NPY_INT: f = "i" + */ + case NPY_SHORT: + __pyx_v_f = __pyx_k_h; + break; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":264 + * elif t == NPY_UBYTE: f = "B" + * elif t == NPY_SHORT: f = "h" + * elif t == NPY_USHORT: f = "H" # <<<<<<<<<<<<<< + * elif t == NPY_INT: f = "i" + * elif t == NPY_UINT: f = "I" + */ + case NPY_USHORT: + __pyx_v_f = __pyx_k_H; + break; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":265 + * elif t == NPY_SHORT: f = "h" + * elif t == NPY_USHORT: f = "H" + * elif t == NPY_INT: f = "i" # <<<<<<<<<<<<<< + * elif t == NPY_UINT: f = "I" + * elif t == NPY_LONG: f = "l" + */ + case NPY_INT: + __pyx_v_f = __pyx_k_i; + break; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":266 + * elif t == NPY_USHORT: f = "H" + * elif t == NPY_INT: f = "i" + * elif t == NPY_UINT: f = "I" # <<<<<<<<<<<<<< + * elif t == NPY_LONG: f = "l" + * elif t == NPY_ULONG: f = "L" + */ + case NPY_UINT: + __pyx_v_f = __pyx_k_I; + break; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":267 + * elif t == NPY_INT: f = "i" + * elif t == NPY_UINT: f = "I" + * elif t == NPY_LONG: f = "l" # <<<<<<<<<<<<<< + * elif t == NPY_ULONG: f = "L" + * elif t == NPY_LONGLONG: f = "q" + */ + case NPY_LONG: + __pyx_v_f = __pyx_k_l; + break; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":268 + * elif t == NPY_UINT: f = "I" + * elif t == NPY_LONG: f = "l" + * elif t == NPY_ULONG: f = "L" # <<<<<<<<<<<<<< + * elif t == NPY_LONGLONG: f = "q" + * elif t == NPY_ULONGLONG: f = "Q" + */ + case NPY_ULONG: + __pyx_v_f = __pyx_k_L; + break; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":269 + * elif t == NPY_LONG: f = "l" + * elif t == NPY_ULONG: f = "L" + * elif t == NPY_LONGLONG: f = "q" # <<<<<<<<<<<<<< + * elif t == NPY_ULONGLONG: f = "Q" + * elif t == NPY_FLOAT: f = "f" + */ + case NPY_LONGLONG: + __pyx_v_f = __pyx_k_q; + break; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":270 + * elif t == NPY_ULONG: f = "L" + * elif t == NPY_LONGLONG: f = "q" + * elif t == NPY_ULONGLONG: f = "Q" # <<<<<<<<<<<<<< + * elif t == NPY_FLOAT: f = "f" + * elif t == NPY_DOUBLE: f = "d" + */ + case NPY_ULONGLONG: + __pyx_v_f = __pyx_k_Q; + break; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":271 + * elif t == NPY_LONGLONG: f = "q" + * elif t == NPY_ULONGLONG: f = "Q" + * elif t == NPY_FLOAT: f = "f" # <<<<<<<<<<<<<< + * elif t == NPY_DOUBLE: f = "d" + * elif t == NPY_LONGDOUBLE: f = "g" + */ + case NPY_FLOAT: + __pyx_v_f = __pyx_k_f; + break; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":272 + * elif t == NPY_ULONGLONG: f = "Q" + * elif t == NPY_FLOAT: f = "f" + * elif t == NPY_DOUBLE: f = "d" # <<<<<<<<<<<<<< + * elif t == NPY_LONGDOUBLE: f = "g" + * elif t == NPY_CFLOAT: f = "Zf" + */ + case NPY_DOUBLE: + __pyx_v_f = __pyx_k_d; + break; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":273 + * elif t == NPY_FLOAT: f = "f" + * elif t == NPY_DOUBLE: f = "d" + * elif t == NPY_LONGDOUBLE: f = "g" # <<<<<<<<<<<<<< + * elif t == NPY_CFLOAT: f = "Zf" + * elif t == NPY_CDOUBLE: f = "Zd" + */ + case NPY_LONGDOUBLE: + __pyx_v_f = __pyx_k_g; + break; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":274 + * elif t == NPY_DOUBLE: f = "d" + * elif t == NPY_LONGDOUBLE: f = "g" + * elif t == NPY_CFLOAT: f = "Zf" # <<<<<<<<<<<<<< + * elif t == NPY_CDOUBLE: f = "Zd" + * elif t == NPY_CLONGDOUBLE: f = "Zg" + */ + case NPY_CFLOAT: + __pyx_v_f = __pyx_k_Zf; + break; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":275 + * elif t == NPY_LONGDOUBLE: f = "g" + * elif t == NPY_CFLOAT: f = "Zf" + * elif t == NPY_CDOUBLE: f = "Zd" # <<<<<<<<<<<<<< + * elif t == NPY_CLONGDOUBLE: f = "Zg" + * elif t == NPY_OBJECT: f = "O" + */ + case NPY_CDOUBLE: + __pyx_v_f = __pyx_k_Zd; + break; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":276 + * elif t == NPY_CFLOAT: f = "Zf" + * elif t == NPY_CDOUBLE: f = "Zd" + * elif t == NPY_CLONGDOUBLE: f = "Zg" # <<<<<<<<<<<<<< + * elif t == NPY_OBJECT: f = "O" + * else: + */ + case NPY_CLONGDOUBLE: + __pyx_v_f = __pyx_k_Zg; + break; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":277 + * elif t == NPY_CDOUBLE: f = "Zd" + * elif t == NPY_CLONGDOUBLE: f = "Zg" + * elif t == NPY_OBJECT: f = "O" # <<<<<<<<<<<<<< + * else: + * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) + */ + case NPY_OBJECT: + __pyx_v_f = __pyx_k_O; + break; + default: + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":279 + * elif t == NPY_OBJECT: f = "O" + * else: + * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) # <<<<<<<<<<<<<< + * info.format = f + * return + */ + __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_t); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 279; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_6 = PyUnicode_Format(__pyx_kp_u_unknown_dtype_code_in_numpy_pxd, __pyx_t_3); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 279; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_6); + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 279; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_6); + __Pyx_GIVEREF(__pyx_t_6); + __pyx_t_6 = 0; + __pyx_t_6 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_t_3, NULL); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 279; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_6); + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __Pyx_Raise(__pyx_t_6, 0, 0, 0); + __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; + {__pyx_filename = __pyx_f[1]; __pyx_lineno = 279; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + break; + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":280 + * else: + * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) + * info.format = f # <<<<<<<<<<<<<< + * return + * else: + */ + __pyx_v_info->format = __pyx_v_f; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":281 + * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) + * info.format = f + * return # <<<<<<<<<<<<<< + * else: + * info.format = <char*>stdlib.malloc(_buffer_format_string_len) + */ + __pyx_r = 0; + goto __pyx_L0; + } + /*else*/ { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":283 + * return + * else: + * info.format = <char*>stdlib.malloc(_buffer_format_string_len) # <<<<<<<<<<<<<< + * info.format[0] = c'^' # Native data types, manual alignment + * offset = 0 + */ + __pyx_v_info->format = ((char *)malloc(255)); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":284 + * else: + * info.format = <char*>stdlib.malloc(_buffer_format_string_len) + * info.format[0] = c'^' # Native data types, manual alignment # <<<<<<<<<<<<<< + * offset = 0 + * f = _util_dtypestring(descr, info.format + 1, + */ + (__pyx_v_info->format[0]) = '^'; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":285 + * info.format = <char*>stdlib.malloc(_buffer_format_string_len) + * info.format[0] = c'^' # Native data types, manual alignment + * offset = 0 # <<<<<<<<<<<<<< + * f = _util_dtypestring(descr, info.format + 1, + * info.format + _buffer_format_string_len, + */ + __pyx_v_offset = 0; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":286 + * info.format[0] = c'^' # Native data types, manual alignment + * offset = 0 + * f = _util_dtypestring(descr, info.format + 1, # <<<<<<<<<<<<<< + * info.format + _buffer_format_string_len, + * &offset) + */ + __pyx_t_7 = __pyx_f_5numpy__util_dtypestring(__pyx_v_descr, (__pyx_v_info->format + 1), (__pyx_v_info->format + 255), (&__pyx_v_offset)); if (unlikely(__pyx_t_7 == NULL)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 286; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_v_f = __pyx_t_7; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":289 + * info.format + _buffer_format_string_len, + * &offset) + * f[0] = c'\0' # Terminate format string # <<<<<<<<<<<<<< + * + * def __releasebuffer__(ndarray self, Py_buffer* info): + */ + (__pyx_v_f[0]) = '\x00'; + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":197 + * # experimental exception made for __getbuffer__ and __releasebuffer__ + * # -- the details of this may change. + * def __getbuffer__(ndarray self, Py_buffer* info, int flags): # <<<<<<<<<<<<<< + * # This implementation of getbuffer is geared towards Cython + * # requirements, and does not yet fullfill the PEP. + */ + + /* function exit code */ + __pyx_r = 0; + goto __pyx_L0; + __pyx_L1_error:; + __Pyx_XDECREF(__pyx_t_3); + __Pyx_XDECREF(__pyx_t_6); + __Pyx_AddTraceback("numpy.ndarray.__getbuffer__", __pyx_clineno, __pyx_lineno, __pyx_filename); + __pyx_r = -1; + if (__pyx_v_info != NULL && __pyx_v_info->obj != NULL) { + __Pyx_GOTREF(__pyx_v_info->obj); + __Pyx_DECREF(__pyx_v_info->obj); __pyx_v_info->obj = NULL; + } + goto __pyx_L2; + __pyx_L0:; + if (__pyx_v_info != NULL && __pyx_v_info->obj == Py_None) { + __Pyx_GOTREF(Py_None); + __Pyx_DECREF(Py_None); __pyx_v_info->obj = NULL; + } + __pyx_L2:; + __Pyx_XDECREF((PyObject *)__pyx_v_descr); + __Pyx_RefNannyFinishContext(); + return __pyx_r; +} + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":291 + * f[0] = c'\0' # Terminate format string + * + * def __releasebuffer__(ndarray self, Py_buffer* info): # <<<<<<<<<<<<<< + * if PyArray_HASFIELDS(self): + * stdlib.free(info.format) + */ + +/* Python wrapper */ +static CYTHON_UNUSED void __pyx_pw_5numpy_7ndarray_3__releasebuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info); /*proto*/ +static CYTHON_UNUSED void __pyx_pw_5numpy_7ndarray_3__releasebuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info) { + __Pyx_RefNannyDeclarations + __Pyx_RefNannySetupContext("__releasebuffer__ (wrapper)", 0); + __pyx_pf_5numpy_7ndarray_2__releasebuffer__(((PyArrayObject *)__pyx_v_self), ((Py_buffer *)__pyx_v_info)); + + /* function exit code */ + __Pyx_RefNannyFinishContext(); +} + +static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info) { + __Pyx_RefNannyDeclarations + int __pyx_t_1; + __Pyx_RefNannySetupContext("__releasebuffer__", 0); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":292 + * + * def __releasebuffer__(ndarray self, Py_buffer* info): + * if PyArray_HASFIELDS(self): # <<<<<<<<<<<<<< + * stdlib.free(info.format) + * if sizeof(npy_intp) != sizeof(Py_ssize_t): + */ + __pyx_t_1 = (PyArray_HASFIELDS(__pyx_v_self) != 0); + if (__pyx_t_1) { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":293 + * def __releasebuffer__(ndarray self, Py_buffer* info): + * if PyArray_HASFIELDS(self): + * stdlib.free(info.format) # <<<<<<<<<<<<<< + * if sizeof(npy_intp) != sizeof(Py_ssize_t): + * stdlib.free(info.strides) + */ + free(__pyx_v_info->format); + goto __pyx_L3; + } + __pyx_L3:; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":294 + * if PyArray_HASFIELDS(self): + * stdlib.free(info.format) + * if sizeof(npy_intp) != sizeof(Py_ssize_t): # <<<<<<<<<<<<<< + * stdlib.free(info.strides) + * # info.shape was stored after info.strides in the same block + */ + __pyx_t_1 = (((sizeof(npy_intp)) != (sizeof(Py_ssize_t))) != 0); + if (__pyx_t_1) { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":295 + * stdlib.free(info.format) + * if sizeof(npy_intp) != sizeof(Py_ssize_t): + * stdlib.free(info.strides) # <<<<<<<<<<<<<< + * # info.shape was stored after info.strides in the same block + * + */ + free(__pyx_v_info->strides); + goto __pyx_L4; + } + __pyx_L4:; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":291 + * f[0] = c'\0' # Terminate format string + * + * def __releasebuffer__(ndarray self, Py_buffer* info): # <<<<<<<<<<<<<< + * if PyArray_HASFIELDS(self): + * stdlib.free(info.format) + */ + + /* function exit code */ + __Pyx_RefNannyFinishContext(); +} + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":771 + * ctypedef npy_cdouble complex_t + * + * cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<< + * return PyArray_MultiIterNew(1, <void*>a) + * + */ + +static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__pyx_v_a) { + PyObject *__pyx_r = NULL; + __Pyx_RefNannyDeclarations + PyObject *__pyx_t_1 = NULL; + int __pyx_lineno = 0; + const char *__pyx_filename = NULL; + int __pyx_clineno = 0; + __Pyx_RefNannySetupContext("PyArray_MultiIterNew1", 0); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":772 + * + * cdef inline object PyArray_MultiIterNew1(a): + * return PyArray_MultiIterNew(1, <void*>a) # <<<<<<<<<<<<<< + * + * cdef inline object PyArray_MultiIterNew2(a, b): + */ + __Pyx_XDECREF(__pyx_r); + __pyx_t_1 = PyArray_MultiIterNew(1, ((void *)__pyx_v_a)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 772; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_1); + __pyx_r = __pyx_t_1; + __pyx_t_1 = 0; + goto __pyx_L0; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":771 + * ctypedef npy_cdouble complex_t + * + * cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<< + * return PyArray_MultiIterNew(1, <void*>a) + * + */ + + /* function exit code */ + __pyx_L1_error:; + __Pyx_XDECREF(__pyx_t_1); + __Pyx_AddTraceback("numpy.PyArray_MultiIterNew1", __pyx_clineno, __pyx_lineno, __pyx_filename); + __pyx_r = 0; + __pyx_L0:; + __Pyx_XGIVEREF(__pyx_r); + __Pyx_RefNannyFinishContext(); + return __pyx_r; +} + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":774 + * return PyArray_MultiIterNew(1, <void*>a) + * + * cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<< + * return PyArray_MultiIterNew(2, <void*>a, <void*>b) + * + */ + +static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__pyx_v_a, PyObject *__pyx_v_b) { + PyObject *__pyx_r = NULL; + __Pyx_RefNannyDeclarations + PyObject *__pyx_t_1 = NULL; + int __pyx_lineno = 0; + const char *__pyx_filename = NULL; + int __pyx_clineno = 0; + __Pyx_RefNannySetupContext("PyArray_MultiIterNew2", 0); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":775 + * + * cdef inline object PyArray_MultiIterNew2(a, b): + * return PyArray_MultiIterNew(2, <void*>a, <void*>b) # <<<<<<<<<<<<<< + * + * cdef inline object PyArray_MultiIterNew3(a, b, c): + */ + __Pyx_XDECREF(__pyx_r); + __pyx_t_1 = PyArray_MultiIterNew(2, ((void *)__pyx_v_a), ((void *)__pyx_v_b)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 775; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_1); + __pyx_r = __pyx_t_1; + __pyx_t_1 = 0; + goto __pyx_L0; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":774 + * return PyArray_MultiIterNew(1, <void*>a) + * + * cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<< + * return PyArray_MultiIterNew(2, <void*>a, <void*>b) + * + */ + + /* function exit code */ + __pyx_L1_error:; + __Pyx_XDECREF(__pyx_t_1); + __Pyx_AddTraceback("numpy.PyArray_MultiIterNew2", __pyx_clineno, __pyx_lineno, __pyx_filename); + __pyx_r = 0; + __pyx_L0:; + __Pyx_XGIVEREF(__pyx_r); + __Pyx_RefNannyFinishContext(); + return __pyx_r; +} + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":777 + * return PyArray_MultiIterNew(2, <void*>a, <void*>b) + * + * cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<< + * return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c) + * + */ + +static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__pyx_v_a, PyObject *__pyx_v_b, PyObject *__pyx_v_c) { + PyObject *__pyx_r = NULL; + __Pyx_RefNannyDeclarations + PyObject *__pyx_t_1 = NULL; + int __pyx_lineno = 0; + const char *__pyx_filename = NULL; + int __pyx_clineno = 0; + __Pyx_RefNannySetupContext("PyArray_MultiIterNew3", 0); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":778 + * + * cdef inline object PyArray_MultiIterNew3(a, b, c): + * return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c) # <<<<<<<<<<<<<< + * + * cdef inline object PyArray_MultiIterNew4(a, b, c, d): + */ + __Pyx_XDECREF(__pyx_r); + __pyx_t_1 = PyArray_MultiIterNew(3, ((void *)__pyx_v_a), ((void *)__pyx_v_b), ((void *)__pyx_v_c)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 778; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_1); + __pyx_r = __pyx_t_1; + __pyx_t_1 = 0; + goto __pyx_L0; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":777 + * return PyArray_MultiIterNew(2, <void*>a, <void*>b) + * + * cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<< + * return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c) + * + */ + + /* function exit code */ + __pyx_L1_error:; + __Pyx_XDECREF(__pyx_t_1); + __Pyx_AddTraceback("numpy.PyArray_MultiIterNew3", __pyx_clineno, __pyx_lineno, __pyx_filename); + __pyx_r = 0; + __pyx_L0:; + __Pyx_XGIVEREF(__pyx_r); + __Pyx_RefNannyFinishContext(); + return __pyx_r; +} + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":780 + * return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c) + * + * cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<< + * return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d) + * + */ + +static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__pyx_v_a, PyObject *__pyx_v_b, PyObject *__pyx_v_c, PyObject *__pyx_v_d) { + PyObject *__pyx_r = NULL; + __Pyx_RefNannyDeclarations + PyObject *__pyx_t_1 = NULL; + int __pyx_lineno = 0; + const char *__pyx_filename = NULL; + int __pyx_clineno = 0; + __Pyx_RefNannySetupContext("PyArray_MultiIterNew4", 0); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":781 + * + * cdef inline object PyArray_MultiIterNew4(a, b, c, d): + * return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d) # <<<<<<<<<<<<<< + * + * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): + */ + __Pyx_XDECREF(__pyx_r); + __pyx_t_1 = PyArray_MultiIterNew(4, ((void *)__pyx_v_a), ((void *)__pyx_v_b), ((void *)__pyx_v_c), ((void *)__pyx_v_d)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 781; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_1); + __pyx_r = __pyx_t_1; + __pyx_t_1 = 0; + goto __pyx_L0; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":780 + * return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c) + * + * cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<< + * return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d) + * + */ + + /* function exit code */ + __pyx_L1_error:; + __Pyx_XDECREF(__pyx_t_1); + __Pyx_AddTraceback("numpy.PyArray_MultiIterNew4", __pyx_clineno, __pyx_lineno, __pyx_filename); + __pyx_r = 0; + __pyx_L0:; + __Pyx_XGIVEREF(__pyx_r); + __Pyx_RefNannyFinishContext(); + return __pyx_r; +} + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":783 + * return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d) + * + * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<< + * return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e) + * + */ + +static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__pyx_v_a, PyObject *__pyx_v_b, PyObject *__pyx_v_c, PyObject *__pyx_v_d, PyObject *__pyx_v_e) { + PyObject *__pyx_r = NULL; + __Pyx_RefNannyDeclarations + PyObject *__pyx_t_1 = NULL; + int __pyx_lineno = 0; + const char *__pyx_filename = NULL; + int __pyx_clineno = 0; + __Pyx_RefNannySetupContext("PyArray_MultiIterNew5", 0); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":784 + * + * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): + * return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e) # <<<<<<<<<<<<<< + * + * cdef inline char* _util_dtypestring(dtype descr, char* f, char* end, int* offset) except NULL: + */ + __Pyx_XDECREF(__pyx_r); + __pyx_t_1 = PyArray_MultiIterNew(5, ((void *)__pyx_v_a), ((void *)__pyx_v_b), ((void *)__pyx_v_c), ((void *)__pyx_v_d), ((void *)__pyx_v_e)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 784; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_1); + __pyx_r = __pyx_t_1; + __pyx_t_1 = 0; + goto __pyx_L0; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":783 + * return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d) + * + * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<< + * return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e) + * + */ + + /* function exit code */ + __pyx_L1_error:; + __Pyx_XDECREF(__pyx_t_1); + __Pyx_AddTraceback("numpy.PyArray_MultiIterNew5", __pyx_clineno, __pyx_lineno, __pyx_filename); + __pyx_r = 0; + __pyx_L0:; + __Pyx_XGIVEREF(__pyx_r); + __Pyx_RefNannyFinishContext(); + return __pyx_r; +} + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":786 + * return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e) + * + * cdef inline char* _util_dtypestring(dtype descr, char* f, char* end, int* offset) except NULL: # <<<<<<<<<<<<<< + * # Recursive utility function used in __getbuffer__ to get format + * # string. The new location in the format string is returned. + */ + +static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx_v_descr, char *__pyx_v_f, char *__pyx_v_end, int *__pyx_v_offset) { + PyArray_Descr *__pyx_v_child = 0; + int __pyx_v_endian_detector; + int __pyx_v_little_endian; + PyObject *__pyx_v_fields = 0; + PyObject *__pyx_v_childname = NULL; + PyObject *__pyx_v_new_offset = NULL; + PyObject *__pyx_v_t = NULL; + char *__pyx_r; + __Pyx_RefNannyDeclarations + PyObject *__pyx_t_1 = NULL; + Py_ssize_t __pyx_t_2; + PyObject *__pyx_t_3 = NULL; + PyObject *__pyx_t_4 = NULL; + int __pyx_t_5; + int __pyx_t_6; + int __pyx_t_7; + long __pyx_t_8; + char *__pyx_t_9; + int __pyx_lineno = 0; + const char *__pyx_filename = NULL; + int __pyx_clineno = 0; + __Pyx_RefNannySetupContext("_util_dtypestring", 0); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":793 + * cdef int delta_offset + * cdef tuple i + * cdef int endian_detector = 1 # <<<<<<<<<<<<<< + * cdef bint little_endian = ((<char*>&endian_detector)[0] != 0) + * cdef tuple fields + */ + __pyx_v_endian_detector = 1; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":794 + * cdef tuple i + * cdef int endian_detector = 1 + * cdef bint little_endian = ((<char*>&endian_detector)[0] != 0) # <<<<<<<<<<<<<< + * cdef tuple fields + * + */ + __pyx_v_little_endian = ((((char *)(&__pyx_v_endian_detector))[0]) != 0); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":797 + * cdef tuple fields + * + * for childname in descr.names: # <<<<<<<<<<<<<< + * fields = descr.fields[childname] + * child, new_offset = fields + */ + if (unlikely(__pyx_v_descr->names == Py_None)) { + PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); + {__pyx_filename = __pyx_f[1]; __pyx_lineno = 797; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + __pyx_t_1 = __pyx_v_descr->names; __Pyx_INCREF(__pyx_t_1); __pyx_t_2 = 0; + for (;;) { + if (__pyx_t_2 >= PyTuple_GET_SIZE(__pyx_t_1)) break; + #if CYTHON_COMPILING_IN_CPYTHON + __pyx_t_3 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_3); __pyx_t_2++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 797; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #else + __pyx_t_3 = PySequence_ITEM(__pyx_t_1, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 797; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #endif + __Pyx_XDECREF_SET(__pyx_v_childname, __pyx_t_3); + __pyx_t_3 = 0; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":798 + * + * for childname in descr.names: + * fields = descr.fields[childname] # <<<<<<<<<<<<<< + * child, new_offset = fields + * + */ + if (unlikely(__pyx_v_descr->fields == Py_None)) { + PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable"); + {__pyx_filename = __pyx_f[1]; __pyx_lineno = 798; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + __pyx_t_3 = __Pyx_PyDict_GetItem(__pyx_v_descr->fields, __pyx_v_childname); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 798; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; + __Pyx_GOTREF(__pyx_t_3); + if (!(likely(PyTuple_CheckExact(__pyx_t_3))||((__pyx_t_3) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "tuple", Py_TYPE(__pyx_t_3)->tp_name), 0))) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 798; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_XDECREF_SET(__pyx_v_fields, ((PyObject*)__pyx_t_3)); + __pyx_t_3 = 0; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":799 + * for childname in descr.names: + * fields = descr.fields[childname] + * child, new_offset = fields # <<<<<<<<<<<<<< + * + * if (end - f) - <int>(new_offset - offset[0]) < 15: + */ + if (likely(__pyx_v_fields != Py_None)) { + PyObject* sequence = __pyx_v_fields; + #if CYTHON_COMPILING_IN_CPYTHON + Py_ssize_t size = Py_SIZE(sequence); + #else + Py_ssize_t size = PySequence_Size(sequence); + #endif + if (unlikely(size != 2)) { + if (size > 2) __Pyx_RaiseTooManyValuesError(2); + else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size); + {__pyx_filename = __pyx_f[1]; __pyx_lineno = 799; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + #if CYTHON_COMPILING_IN_CPYTHON + __pyx_t_3 = PyTuple_GET_ITEM(sequence, 0); + __pyx_t_4 = PyTuple_GET_ITEM(sequence, 1); + __Pyx_INCREF(__pyx_t_3); + __Pyx_INCREF(__pyx_t_4); + #else + __pyx_t_3 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 799; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_4 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 799; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + #endif + } else { + __Pyx_RaiseNoneNotIterableError(); {__pyx_filename = __pyx_f[1]; __pyx_lineno = 799; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + if (!(likely(((__pyx_t_3) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_3, __pyx_ptype_5numpy_dtype))))) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 799; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_XDECREF_SET(__pyx_v_child, ((PyArray_Descr *)__pyx_t_3)); + __pyx_t_3 = 0; + __Pyx_XDECREF_SET(__pyx_v_new_offset, __pyx_t_4); + __pyx_t_4 = 0; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":801 + * child, new_offset = fields + * + * if (end - f) - <int>(new_offset - offset[0]) < 15: # <<<<<<<<<<<<<< + * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") + * + */ + __pyx_t_4 = __Pyx_PyInt_From_int((__pyx_v_offset[0])); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 801; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __pyx_t_3 = PyNumber_Subtract(__pyx_v_new_offset, __pyx_t_4); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 801; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __pyx_t_5 = __Pyx_PyInt_As_int(__pyx_t_3); if (unlikely((__pyx_t_5 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 801; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __pyx_t_6 = ((((__pyx_v_end - __pyx_v_f) - ((int)__pyx_t_5)) < 15) != 0); + if (__pyx_t_6) { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":802 + * + * if (end - f) - <int>(new_offset - offset[0]) < 15: + * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") # <<<<<<<<<<<<<< + * + * if ((child.byteorder == c'>' and little_endian) or + */ + __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_RuntimeError, __pyx_tuple__5, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 802; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __Pyx_Raise(__pyx_t_3, 0, 0, 0); + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + {__pyx_filename = __pyx_f[1]; __pyx_lineno = 802; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":804 + * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") + * + * if ((child.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< + * (child.byteorder == c'<' and not little_endian)): + * raise ValueError(u"Non-native byte order not supported") + */ + __pyx_t_7 = ((__pyx_v_child->byteorder == '>') != 0); + if (!__pyx_t_7) { + goto __pyx_L8_next_or; + } else { + } + __pyx_t_7 = (__pyx_v_little_endian != 0); + if (!__pyx_t_7) { + } else { + __pyx_t_6 = __pyx_t_7; + goto __pyx_L7_bool_binop_done; + } + __pyx_L8_next_or:; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":805 + * + * if ((child.byteorder == c'>' and little_endian) or + * (child.byteorder == c'<' and not little_endian)): # <<<<<<<<<<<<<< + * raise ValueError(u"Non-native byte order not supported") + * # One could encode it in the format string and have Cython + */ + __pyx_t_7 = ((__pyx_v_child->byteorder == '<') != 0); + if (__pyx_t_7) { + } else { + __pyx_t_6 = __pyx_t_7; + goto __pyx_L7_bool_binop_done; + } + __pyx_t_7 = ((!(__pyx_v_little_endian != 0)) != 0); + __pyx_t_6 = __pyx_t_7; + __pyx_L7_bool_binop_done:; + if (__pyx_t_6) { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":806 + * if ((child.byteorder == c'>' and little_endian) or + * (child.byteorder == c'<' and not little_endian)): + * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<< + * # One could encode it in the format string and have Cython + * # complain instead, BUT: < and > in format strings also imply + */ + __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__6, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 806; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __Pyx_Raise(__pyx_t_3, 0, 0, 0); + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + {__pyx_filename = __pyx_f[1]; __pyx_lineno = 806; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":816 + * + * # Output padding bytes + * while offset[0] < new_offset: # <<<<<<<<<<<<<< + * f[0] = 120 # "x"; pad byte + * f += 1 + */ + while (1) { + __pyx_t_3 = __Pyx_PyInt_From_int((__pyx_v_offset[0])); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 816; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_4 = PyObject_RichCompare(__pyx_t_3, __pyx_v_new_offset, Py_LT); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 816; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 816; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + if (!__pyx_t_6) break; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":817 + * # Output padding bytes + * while offset[0] < new_offset: + * f[0] = 120 # "x"; pad byte # <<<<<<<<<<<<<< + * f += 1 + * offset[0] += 1 + */ + (__pyx_v_f[0]) = 120; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":818 + * while offset[0] < new_offset: + * f[0] = 120 # "x"; pad byte + * f += 1 # <<<<<<<<<<<<<< + * offset[0] += 1 + * + */ + __pyx_v_f = (__pyx_v_f + 1); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":819 + * f[0] = 120 # "x"; pad byte + * f += 1 + * offset[0] += 1 # <<<<<<<<<<<<<< + * + * offset[0] += child.itemsize + */ + __pyx_t_8 = 0; + (__pyx_v_offset[__pyx_t_8]) = ((__pyx_v_offset[__pyx_t_8]) + 1); + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":821 + * offset[0] += 1 + * + * offset[0] += child.itemsize # <<<<<<<<<<<<<< + * + * if not PyDataType_HASFIELDS(child): + */ + __pyx_t_8 = 0; + (__pyx_v_offset[__pyx_t_8]) = ((__pyx_v_offset[__pyx_t_8]) + __pyx_v_child->elsize); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":823 + * offset[0] += child.itemsize + * + * if not PyDataType_HASFIELDS(child): # <<<<<<<<<<<<<< + * t = child.type_num + * if end - f < 5: + */ + __pyx_t_6 = ((!(PyDataType_HASFIELDS(__pyx_v_child) != 0)) != 0); + if (__pyx_t_6) { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":824 + * + * if not PyDataType_HASFIELDS(child): + * t = child.type_num # <<<<<<<<<<<<<< + * if end - f < 5: + * raise RuntimeError(u"Format string allocated too short.") + */ + __pyx_t_4 = __Pyx_PyInt_From_int(__pyx_v_child->type_num); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 824; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __Pyx_XDECREF_SET(__pyx_v_t, __pyx_t_4); + __pyx_t_4 = 0; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":825 + * if not PyDataType_HASFIELDS(child): + * t = child.type_num + * if end - f < 5: # <<<<<<<<<<<<<< + * raise RuntimeError(u"Format string allocated too short.") + * + */ + __pyx_t_6 = (((__pyx_v_end - __pyx_v_f) < 5) != 0); + if (__pyx_t_6) { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":826 + * t = child.type_num + * if end - f < 5: + * raise RuntimeError(u"Format string allocated too short.") # <<<<<<<<<<<<<< + * + * # Until ticket #99 is fixed, use integers to avoid warnings + */ + __pyx_t_4 = __Pyx_PyObject_Call(__pyx_builtin_RuntimeError, __pyx_tuple__7, NULL); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 826; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __Pyx_Raise(__pyx_t_4, 0, 0, 0); + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + {__pyx_filename = __pyx_f[1]; __pyx_lineno = 826; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":829 + * + * # Until ticket #99 is fixed, use integers to avoid warnings + * if t == NPY_BYTE: f[0] = 98 #"b" # <<<<<<<<<<<<<< + * elif t == NPY_UBYTE: f[0] = 66 #"B" + * elif t == NPY_SHORT: f[0] = 104 #"h" + */ + __pyx_t_4 = PyInt_FromLong(NPY_BYTE); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 829; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __pyx_t_3 = PyObject_RichCompare(__pyx_v_t, __pyx_t_4, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 829; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 829; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + if (__pyx_t_6) { + (__pyx_v_f[0]) = 98; + goto __pyx_L15; + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":830 + * # Until ticket #99 is fixed, use integers to avoid warnings + * if t == NPY_BYTE: f[0] = 98 #"b" + * elif t == NPY_UBYTE: f[0] = 66 #"B" # <<<<<<<<<<<<<< + * elif t == NPY_SHORT: f[0] = 104 #"h" + * elif t == NPY_USHORT: f[0] = 72 #"H" + */ + __pyx_t_3 = PyInt_FromLong(NPY_UBYTE); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 830; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_4 = PyObject_RichCompare(__pyx_v_t, __pyx_t_3, Py_EQ); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 830; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 830; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + if (__pyx_t_6) { + (__pyx_v_f[0]) = 66; + goto __pyx_L15; + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":831 + * if t == NPY_BYTE: f[0] = 98 #"b" + * elif t == NPY_UBYTE: f[0] = 66 #"B" + * elif t == NPY_SHORT: f[0] = 104 #"h" # <<<<<<<<<<<<<< + * elif t == NPY_USHORT: f[0] = 72 #"H" + * elif t == NPY_INT: f[0] = 105 #"i" + */ + __pyx_t_4 = PyInt_FromLong(NPY_SHORT); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 831; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __pyx_t_3 = PyObject_RichCompare(__pyx_v_t, __pyx_t_4, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 831; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 831; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + if (__pyx_t_6) { + (__pyx_v_f[0]) = 104; + goto __pyx_L15; + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":832 + * elif t == NPY_UBYTE: f[0] = 66 #"B" + * elif t == NPY_SHORT: f[0] = 104 #"h" + * elif t == NPY_USHORT: f[0] = 72 #"H" # <<<<<<<<<<<<<< + * elif t == NPY_INT: f[0] = 105 #"i" + * elif t == NPY_UINT: f[0] = 73 #"I" + */ + __pyx_t_3 = PyInt_FromLong(NPY_USHORT); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 832; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_4 = PyObject_RichCompare(__pyx_v_t, __pyx_t_3, Py_EQ); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 832; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 832; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + if (__pyx_t_6) { + (__pyx_v_f[0]) = 72; + goto __pyx_L15; + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":833 + * elif t == NPY_SHORT: f[0] = 104 #"h" + * elif t == NPY_USHORT: f[0] = 72 #"H" + * elif t == NPY_INT: f[0] = 105 #"i" # <<<<<<<<<<<<<< + * elif t == NPY_UINT: f[0] = 73 #"I" + * elif t == NPY_LONG: f[0] = 108 #"l" + */ + __pyx_t_4 = PyInt_FromLong(NPY_INT); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 833; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __pyx_t_3 = PyObject_RichCompare(__pyx_v_t, __pyx_t_4, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 833; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 833; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + if (__pyx_t_6) { + (__pyx_v_f[0]) = 105; + goto __pyx_L15; + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":834 + * elif t == NPY_USHORT: f[0] = 72 #"H" + * elif t == NPY_INT: f[0] = 105 #"i" + * elif t == NPY_UINT: f[0] = 73 #"I" # <<<<<<<<<<<<<< + * elif t == NPY_LONG: f[0] = 108 #"l" + * elif t == NPY_ULONG: f[0] = 76 #"L" + */ + __pyx_t_3 = PyInt_FromLong(NPY_UINT); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 834; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_4 = PyObject_RichCompare(__pyx_v_t, __pyx_t_3, Py_EQ); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 834; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 834; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + if (__pyx_t_6) { + (__pyx_v_f[0]) = 73; + goto __pyx_L15; + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":835 + * elif t == NPY_INT: f[0] = 105 #"i" + * elif t == NPY_UINT: f[0] = 73 #"I" + * elif t == NPY_LONG: f[0] = 108 #"l" # <<<<<<<<<<<<<< + * elif t == NPY_ULONG: f[0] = 76 #"L" + * elif t == NPY_LONGLONG: f[0] = 113 #"q" + */ + __pyx_t_4 = PyInt_FromLong(NPY_LONG); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 835; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __pyx_t_3 = PyObject_RichCompare(__pyx_v_t, __pyx_t_4, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 835; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 835; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + if (__pyx_t_6) { + (__pyx_v_f[0]) = 108; + goto __pyx_L15; + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":836 + * elif t == NPY_UINT: f[0] = 73 #"I" + * elif t == NPY_LONG: f[0] = 108 #"l" + * elif t == NPY_ULONG: f[0] = 76 #"L" # <<<<<<<<<<<<<< + * elif t == NPY_LONGLONG: f[0] = 113 #"q" + * elif t == NPY_ULONGLONG: f[0] = 81 #"Q" + */ + __pyx_t_3 = PyInt_FromLong(NPY_ULONG); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 836; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_4 = PyObject_RichCompare(__pyx_v_t, __pyx_t_3, Py_EQ); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 836; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 836; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + if (__pyx_t_6) { + (__pyx_v_f[0]) = 76; + goto __pyx_L15; + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":837 + * elif t == NPY_LONG: f[0] = 108 #"l" + * elif t == NPY_ULONG: f[0] = 76 #"L" + * elif t == NPY_LONGLONG: f[0] = 113 #"q" # <<<<<<<<<<<<<< + * elif t == NPY_ULONGLONG: f[0] = 81 #"Q" + * elif t == NPY_FLOAT: f[0] = 102 #"f" + */ + __pyx_t_4 = PyInt_FromLong(NPY_LONGLONG); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 837; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __pyx_t_3 = PyObject_RichCompare(__pyx_v_t, __pyx_t_4, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 837; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 837; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + if (__pyx_t_6) { + (__pyx_v_f[0]) = 113; + goto __pyx_L15; + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":838 + * elif t == NPY_ULONG: f[0] = 76 #"L" + * elif t == NPY_LONGLONG: f[0] = 113 #"q" + * elif t == NPY_ULONGLONG: f[0] = 81 #"Q" # <<<<<<<<<<<<<< + * elif t == NPY_FLOAT: f[0] = 102 #"f" + * elif t == NPY_DOUBLE: f[0] = 100 #"d" + */ + __pyx_t_3 = PyInt_FromLong(NPY_ULONGLONG); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 838; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_4 = PyObject_RichCompare(__pyx_v_t, __pyx_t_3, Py_EQ); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 838; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 838; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + if (__pyx_t_6) { + (__pyx_v_f[0]) = 81; + goto __pyx_L15; + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":839 + * elif t == NPY_LONGLONG: f[0] = 113 #"q" + * elif t == NPY_ULONGLONG: f[0] = 81 #"Q" + * elif t == NPY_FLOAT: f[0] = 102 #"f" # <<<<<<<<<<<<<< + * elif t == NPY_DOUBLE: f[0] = 100 #"d" + * elif t == NPY_LONGDOUBLE: f[0] = 103 #"g" + */ + __pyx_t_4 = PyInt_FromLong(NPY_FLOAT); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 839; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __pyx_t_3 = PyObject_RichCompare(__pyx_v_t, __pyx_t_4, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 839; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 839; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + if (__pyx_t_6) { + (__pyx_v_f[0]) = 102; + goto __pyx_L15; + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":840 + * elif t == NPY_ULONGLONG: f[0] = 81 #"Q" + * elif t == NPY_FLOAT: f[0] = 102 #"f" + * elif t == NPY_DOUBLE: f[0] = 100 #"d" # <<<<<<<<<<<<<< + * elif t == NPY_LONGDOUBLE: f[0] = 103 #"g" + * elif t == NPY_CFLOAT: f[0] = 90; f[1] = 102; f += 1 # Zf + */ + __pyx_t_3 = PyInt_FromLong(NPY_DOUBLE); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 840; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_4 = PyObject_RichCompare(__pyx_v_t, __pyx_t_3, Py_EQ); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 840; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 840; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + if (__pyx_t_6) { + (__pyx_v_f[0]) = 100; + goto __pyx_L15; + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":841 + * elif t == NPY_FLOAT: f[0] = 102 #"f" + * elif t == NPY_DOUBLE: f[0] = 100 #"d" + * elif t == NPY_LONGDOUBLE: f[0] = 103 #"g" # <<<<<<<<<<<<<< + * elif t == NPY_CFLOAT: f[0] = 90; f[1] = 102; f += 1 # Zf + * elif t == NPY_CDOUBLE: f[0] = 90; f[1] = 100; f += 1 # Zd + */ + __pyx_t_4 = PyInt_FromLong(NPY_LONGDOUBLE); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 841; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __pyx_t_3 = PyObject_RichCompare(__pyx_v_t, __pyx_t_4, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 841; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 841; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + if (__pyx_t_6) { + (__pyx_v_f[0]) = 103; + goto __pyx_L15; + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":842 + * elif t == NPY_DOUBLE: f[0] = 100 #"d" + * elif t == NPY_LONGDOUBLE: f[0] = 103 #"g" + * elif t == NPY_CFLOAT: f[0] = 90; f[1] = 102; f += 1 # Zf # <<<<<<<<<<<<<< + * elif t == NPY_CDOUBLE: f[0] = 90; f[1] = 100; f += 1 # Zd + * elif t == NPY_CLONGDOUBLE: f[0] = 90; f[1] = 103; f += 1 # Zg + */ + __pyx_t_3 = PyInt_FromLong(NPY_CFLOAT); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 842; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_4 = PyObject_RichCompare(__pyx_v_t, __pyx_t_3, Py_EQ); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 842; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 842; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + if (__pyx_t_6) { + (__pyx_v_f[0]) = 90; + (__pyx_v_f[1]) = 102; + __pyx_v_f = (__pyx_v_f + 1); + goto __pyx_L15; + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":843 + * elif t == NPY_LONGDOUBLE: f[0] = 103 #"g" + * elif t == NPY_CFLOAT: f[0] = 90; f[1] = 102; f += 1 # Zf + * elif t == NPY_CDOUBLE: f[0] = 90; f[1] = 100; f += 1 # Zd # <<<<<<<<<<<<<< + * elif t == NPY_CLONGDOUBLE: f[0] = 90; f[1] = 103; f += 1 # Zg + * elif t == NPY_OBJECT: f[0] = 79 #"O" + */ + __pyx_t_4 = PyInt_FromLong(NPY_CDOUBLE); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 843; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __pyx_t_3 = PyObject_RichCompare(__pyx_v_t, __pyx_t_4, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 843; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 843; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + if (__pyx_t_6) { + (__pyx_v_f[0]) = 90; + (__pyx_v_f[1]) = 100; + __pyx_v_f = (__pyx_v_f + 1); + goto __pyx_L15; + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":844 + * elif t == NPY_CFLOAT: f[0] = 90; f[1] = 102; f += 1 # Zf + * elif t == NPY_CDOUBLE: f[0] = 90; f[1] = 100; f += 1 # Zd + * elif t == NPY_CLONGDOUBLE: f[0] = 90; f[1] = 103; f += 1 # Zg # <<<<<<<<<<<<<< + * elif t == NPY_OBJECT: f[0] = 79 #"O" + * else: + */ + __pyx_t_3 = PyInt_FromLong(NPY_CLONGDOUBLE); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 844; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_4 = PyObject_RichCompare(__pyx_v_t, __pyx_t_3, Py_EQ); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 844; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 844; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + if (__pyx_t_6) { + (__pyx_v_f[0]) = 90; + (__pyx_v_f[1]) = 103; + __pyx_v_f = (__pyx_v_f + 1); + goto __pyx_L15; + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":845 + * elif t == NPY_CDOUBLE: f[0] = 90; f[1] = 100; f += 1 # Zd + * elif t == NPY_CLONGDOUBLE: f[0] = 90; f[1] = 103; f += 1 # Zg + * elif t == NPY_OBJECT: f[0] = 79 #"O" # <<<<<<<<<<<<<< + * else: + * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) + */ + __pyx_t_4 = PyInt_FromLong(NPY_OBJECT); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 845; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + __pyx_t_3 = PyObject_RichCompare(__pyx_v_t, __pyx_t_4, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 845; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 845; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + if (__pyx_t_6) { + (__pyx_v_f[0]) = 79; + goto __pyx_L15; + } + /*else*/ { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":847 + * elif t == NPY_OBJECT: f[0] = 79 #"O" + * else: + * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) # <<<<<<<<<<<<<< + * f += 1 + * else: + */ + __pyx_t_3 = PyUnicode_Format(__pyx_kp_u_unknown_dtype_code_in_numpy_pxd, __pyx_v_t); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 847; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __pyx_t_4 = PyTuple_New(1); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 847; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_4); + PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_3); + __Pyx_GIVEREF(__pyx_t_3); + __pyx_t_3 = 0; + __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_t_4, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 847; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; + __Pyx_Raise(__pyx_t_3, 0, 0, 0); + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + {__pyx_filename = __pyx_f[1]; __pyx_lineno = 847; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + __pyx_L15:; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":848 + * else: + * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) + * f += 1 # <<<<<<<<<<<<<< + * else: + * # Cython ignores struct boundary information ("T{...}"), + */ + __pyx_v_f = (__pyx_v_f + 1); + goto __pyx_L13; + } + /*else*/ { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":852 + * # Cython ignores struct boundary information ("T{...}"), + * # so don't output it + * f = _util_dtypestring(child, f, end, offset) # <<<<<<<<<<<<<< + * return f + * + */ + __pyx_t_9 = __pyx_f_5numpy__util_dtypestring(__pyx_v_child, __pyx_v_f, __pyx_v_end, __pyx_v_offset); if (unlikely(__pyx_t_9 == NULL)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 852; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_v_f = __pyx_t_9; + } + __pyx_L13:; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":797 + * cdef tuple fields + * + * for childname in descr.names: # <<<<<<<<<<<<<< + * fields = descr.fields[childname] + * child, new_offset = fields + */ + } + __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":853 + * # so don't output it + * f = _util_dtypestring(child, f, end, offset) + * return f # <<<<<<<<<<<<<< + * + * + */ + __pyx_r = __pyx_v_f; + goto __pyx_L0; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":786 + * return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e) + * + * cdef inline char* _util_dtypestring(dtype descr, char* f, char* end, int* offset) except NULL: # <<<<<<<<<<<<<< + * # Recursive utility function used in __getbuffer__ to get format + * # string. The new location in the format string is returned. + */ + + /* function exit code */ + __pyx_L1_error:; + __Pyx_XDECREF(__pyx_t_1); + __Pyx_XDECREF(__pyx_t_3); + __Pyx_XDECREF(__pyx_t_4); + __Pyx_AddTraceback("numpy._util_dtypestring", __pyx_clineno, __pyx_lineno, __pyx_filename); + __pyx_r = NULL; + __pyx_L0:; + __Pyx_XDECREF((PyObject *)__pyx_v_child); + __Pyx_XDECREF(__pyx_v_fields); + __Pyx_XDECREF(__pyx_v_childname); + __Pyx_XDECREF(__pyx_v_new_offset); + __Pyx_XDECREF(__pyx_v_t); + __Pyx_RefNannyFinishContext(); + return __pyx_r; +} + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":969 + * + * + * cdef inline void set_array_base(ndarray arr, object base): # <<<<<<<<<<<<<< + * cdef PyObject* baseptr + * if base is None: + */ + +static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_arr, PyObject *__pyx_v_base) { + PyObject *__pyx_v_baseptr; + __Pyx_RefNannyDeclarations + int __pyx_t_1; + int __pyx_t_2; + __Pyx_RefNannySetupContext("set_array_base", 0); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":971 + * cdef inline void set_array_base(ndarray arr, object base): + * cdef PyObject* baseptr + * if base is None: # <<<<<<<<<<<<<< + * baseptr = NULL + * else: + */ + __pyx_t_1 = (__pyx_v_base == Py_None); + __pyx_t_2 = (__pyx_t_1 != 0); + if (__pyx_t_2) { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":972 + * cdef PyObject* baseptr + * if base is None: + * baseptr = NULL # <<<<<<<<<<<<<< + * else: + * Py_INCREF(base) # important to do this before decref below! + */ + __pyx_v_baseptr = NULL; + goto __pyx_L3; + } + /*else*/ { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":974 + * baseptr = NULL + * else: + * Py_INCREF(base) # important to do this before decref below! # <<<<<<<<<<<<<< + * baseptr = <PyObject*>base + * Py_XDECREF(arr.base) + */ + Py_INCREF(__pyx_v_base); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":975 + * else: + * Py_INCREF(base) # important to do this before decref below! + * baseptr = <PyObject*>base # <<<<<<<<<<<<<< + * Py_XDECREF(arr.base) + * arr.base = baseptr + */ + __pyx_v_baseptr = ((PyObject *)__pyx_v_base); + } + __pyx_L3:; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":976 + * Py_INCREF(base) # important to do this before decref below! + * baseptr = <PyObject*>base + * Py_XDECREF(arr.base) # <<<<<<<<<<<<<< + * arr.base = baseptr + * + */ + Py_XDECREF(__pyx_v_arr->base); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":977 + * baseptr = <PyObject*>base + * Py_XDECREF(arr.base) + * arr.base = baseptr # <<<<<<<<<<<<<< + * + * cdef inline object get_array_base(ndarray arr): + */ + __pyx_v_arr->base = __pyx_v_baseptr; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":969 + * + * + * cdef inline void set_array_base(ndarray arr, object base): # <<<<<<<<<<<<<< + * cdef PyObject* baseptr + * if base is None: + */ + + /* function exit code */ + __Pyx_RefNannyFinishContext(); +} + +/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":979 + * arr.base = baseptr + * + * cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<< + * if arr.base is NULL: + * return None + */ + +static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__pyx_v_arr) { + PyObject *__pyx_r = NULL; + __Pyx_RefNannyDeclarations + int __pyx_t_1; + __Pyx_RefNannySetupContext("get_array_base", 0); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":980 + * + * cdef inline object get_array_base(ndarray arr): + * if arr.base is NULL: # <<<<<<<<<<<<<< + * return None + * else: + */ + __pyx_t_1 = ((__pyx_v_arr->base == NULL) != 0); + if (__pyx_t_1) { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":981 + * cdef inline object get_array_base(ndarray arr): + * if arr.base is NULL: + * return None # <<<<<<<<<<<<<< + * else: + * return <object>arr.base + */ + __Pyx_XDECREF(__pyx_r); + __Pyx_INCREF(Py_None); + __pyx_r = Py_None; + goto __pyx_L0; + } + /*else*/ { + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":983 + * return None + * else: + * return <object>arr.base # <<<<<<<<<<<<<< + */ + __Pyx_XDECREF(__pyx_r); + __Pyx_INCREF(((PyObject *)__pyx_v_arr->base)); + __pyx_r = ((PyObject *)__pyx_v_arr->base); + goto __pyx_L0; + } + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":979 + * arr.base = baseptr + * + * cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<< + * if arr.base is NULL: + * return None + */ + + /* function exit code */ + __pyx_L0:; + __Pyx_XGIVEREF(__pyx_r); + __Pyx_RefNannyFinishContext(); + return __pyx_r; +} + +static PyMethodDef __pyx_methods[] = { + {0, 0, 0, 0} +}; + +#if PY_MAJOR_VERSION >= 3 +static struct PyModuleDef __pyx_moduledef = { + #if PY_VERSION_HEX < 0x03020000 + { PyObject_HEAD_INIT(NULL) NULL, 0, NULL }, + #else + PyModuleDef_HEAD_INIT, + #endif + "ml3", + 0, /* m_doc */ + -1, /* m_size */ + __pyx_methods /* m_methods */, + NULL, /* m_reload */ + NULL, /* m_traverse */ + NULL, /* m_clear */ + NULL /* m_free */ +}; +#endif + +static __Pyx_StringTabEntry __pyx_string_tab[] = { + {&__pyx_n_s_DTYPE, __pyx_k_DTYPE, sizeof(__pyx_k_DTYPE), 0, 0, 1, 1}, + {&__pyx_kp_u_Format_string_allocated_too_shor, __pyx_k_Format_string_allocated_too_shor, sizeof(__pyx_k_Format_string_allocated_too_shor), 0, 1, 0, 0}, + {&__pyx_kp_u_Format_string_allocated_too_shor_2, __pyx_k_Format_string_allocated_too_shor_2, sizeof(__pyx_k_Format_string_allocated_too_shor_2), 0, 1, 0, 0}, + {&__pyx_kp_u_Non_native_byte_order_not_suppor, __pyx_k_Non_native_byte_order_not_suppor, sizeof(__pyx_k_Non_native_byte_order_not_suppor), 0, 1, 0, 0}, + {&__pyx_n_s_RuntimeError, __pyx_k_RuntimeError, sizeof(__pyx_k_RuntimeError), 0, 0, 1, 1}, + {&__pyx_kp_s_Users_ben_Documents_Cascade_Pro, __pyx_k_Users_ben_Documents_Cascade_Pro, sizeof(__pyx_k_Users_ben_Documents_Cascade_Pro), 0, 0, 1, 0}, + {&__pyx_n_s_ValueError, __pyx_k_ValueError, sizeof(__pyx_k_ValueError), 0, 0, 1, 1}, + {&__pyx_n_s_age, __pyx_k_age, sizeof(__pyx_k_age), 0, 0, 1, 1}, + {&__pyx_n_s_alpha, __pyx_k_alpha, sizeof(__pyx_k_alpha), 0, 0, 1, 1}, + {&__pyx_n_s_arange, __pyx_k_arange, sizeof(__pyx_k_arange), 0, 0, 1, 1}, + {&__pyx_n_s_beta, __pyx_k_beta, sizeof(__pyx_k_beta), 0, 0, 1, 1}, + {&__pyx_n_s_beta_add, __pyx_k_beta_add, sizeof(__pyx_k_beta_add), 0, 0, 1, 1}, + {&__pyx_n_s_delta, __pyx_k_delta, sizeof(__pyx_k_delta), 0, 0, 1, 1}, + {&__pyx_n_s_dist, __pyx_k_dist, sizeof(__pyx_k_dist), 0, 0, 1, 1}, + {&__pyx_n_s_dists, __pyx_k_dists, sizeof(__pyx_k_dists), 0, 0, 1, 1}, + {&__pyx_n_s_dt, __pyx_k_dt, sizeof(__pyx_k_dt), 0, 0, 1, 1}, + {&__pyx_n_s_dts, __pyx_k_dts, sizeof(__pyx_k_dts), 0, 0, 1, 1}, + {&__pyx_n_s_dtype, __pyx_k_dtype, sizeof(__pyx_k_dtype), 0, 0, 1, 1}, + {&__pyx_n_s_enumerate, __pyx_k_enumerate, sizeof(__pyx_k_enumerate), 0, 0, 1, 1}, + {&__pyx_n_s_failures, __pyx_k_failures, sizeof(__pyx_k_failures), 0, 0, 1, 1}, + {&__pyx_n_s_float64, __pyx_k_float64, sizeof(__pyx_k_float64), 0, 0, 1, 1}, + {&__pyx_n_s_i, __pyx_k_i, sizeof(__pyx_k_i), 0, 0, 1, 1}, + {&__pyx_n_s_import, __pyx_k_import, sizeof(__pyx_k_import), 0, 0, 1, 1}, + {&__pyx_kp_s_inf, __pyx_k_inf, sizeof(__pyx_k_inf), 0, 0, 1, 0}, + {&__pyx_n_s_itervalues, __pyx_k_itervalues, sizeof(__pyx_k_itervalues), 0, 0, 1, 1}, + {&__pyx_n_s_l, __pyx_k_l, sizeof(__pyx_k_l), 0, 0, 1, 1}, + {&__pyx_n_s_ll, __pyx_k_ll, sizeof(__pyx_k_ll), 0, 0, 1, 1}, + {&__pyx_n_s_main, __pyx_k_main, sizeof(__pyx_k_main), 0, 0, 1, 1}, + {&__pyx_n_s_max_beta, __pyx_k_max_beta, sizeof(__pyx_k_max_beta), 0, 0, 1, 1}, + {&__pyx_n_s_max_beta_add, __pyx_k_max_beta_add, sizeof(__pyx_k_max_beta_add), 0, 0, 1, 1}, + {&__pyx_n_s_max_roots, __pyx_k_max_roots, sizeof(__pyx_k_max_roots), 0, 0, 1, 1}, + {&__pyx_n_s_ml3, __pyx_k_ml3, sizeof(__pyx_k_ml3), 0, 0, 1, 1}, + {&__pyx_n_s_n_roots, __pyx_k_n_roots, sizeof(__pyx_k_n_roots), 0, 0, 1, 1}, + {&__pyx_n_s_n_victims, __pyx_k_n_victims, sizeof(__pyx_k_n_victims), 0, 0, 1, 1}, + {&__pyx_kp_u_ndarray_is_not_C_contiguous, __pyx_k_ndarray_is_not_C_contiguous, sizeof(__pyx_k_ndarray_is_not_C_contiguous), 0, 1, 0, 0}, + {&__pyx_kp_u_ndarray_is_not_Fortran_contiguou, __pyx_k_ndarray_is_not_Fortran_contiguou, sizeof(__pyx_k_ndarray_is_not_Fortran_contiguou), 0, 1, 0, 0}, + {&__pyx_n_s_non_seeds, __pyx_k_non_seeds, sizeof(__pyx_k_non_seeds), 0, 0, 1, 1}, + {&__pyx_n_s_non_victims, __pyx_k_non_victims, sizeof(__pyx_k_non_victims), 0, 0, 1, 1}, + {&__pyx_n_s_np, __pyx_k_np, sizeof(__pyx_k_np), 0, 0, 1, 1}, + {&__pyx_n_s_numpy, __pyx_k_numpy, sizeof(__pyx_k_numpy), 0, 0, 1, 1}, + {&__pyx_n_s_parent_dists, __pyx_k_parent_dists, sizeof(__pyx_k_parent_dists), 0, 0, 1, 1}, + {&__pyx_n_s_parent_dts, __pyx_k_parent_dts, sizeof(__pyx_k_parent_dts), 0, 0, 1, 1}, + {&__pyx_n_s_parents, __pyx_k_parents, sizeof(__pyx_k_parents), 0, 0, 1, 1}, + {&__pyx_n_s_prnt, __pyx_k_prnt, sizeof(__pyx_k_prnt), 0, 0, 1, 1}, + {&__pyx_n_s_prob, __pyx_k_prob, sizeof(__pyx_k_prob), 0, 0, 1, 1}, + {&__pyx_n_s_probs, __pyx_k_probs, sizeof(__pyx_k_probs), 0, 0, 1, 1}, + {&__pyx_n_s_probs_fail, __pyx_k_probs_fail, sizeof(__pyx_k_probs_fail), 0, 0, 1, 1}, + {&__pyx_n_s_range, __pyx_k_range, sizeof(__pyx_k_range), 0, 0, 1, 1}, + {&__pyx_n_s_root_victims, __pyx_k_root_victims, sizeof(__pyx_k_root_victims), 0, 0, 1, 1}, + {&__pyx_n_s_roots, __pyx_k_roots, sizeof(__pyx_k_roots), 0, 0, 1, 1}, + {&__pyx_n_s_s, __pyx_k_s, sizeof(__pyx_k_s), 0, 0, 1, 1}, + {&__pyx_n_s_seeds, __pyx_k_seeds, sizeof(__pyx_k_seeds), 0, 0, 1, 1}, + {&__pyx_n_s_successes, __pyx_k_successes, sizeof(__pyx_k_successes), 0, 0, 1, 1}, + {&__pyx_n_s_sum, __pyx_k_sum, sizeof(__pyx_k_sum), 0, 0, 1, 1}, + {&__pyx_n_s_t, __pyx_k_t, sizeof(__pyx_k_t), 0, 0, 1, 1}, + {&__pyx_n_s_test, __pyx_k_test, sizeof(__pyx_k_test), 0, 0, 1, 1}, + {&__pyx_n_s_thresh, __pyx_k_thresh, sizeof(__pyx_k_thresh), 0, 0, 1, 1}, + {&__pyx_kp_u_unknown_dtype_code_in_numpy_pxd, __pyx_k_unknown_dtype_code_in_numpy_pxd, sizeof(__pyx_k_unknown_dtype_code_in_numpy_pxd), 0, 1, 0, 0}, + {&__pyx_n_s_victims, __pyx_k_victims, sizeof(__pyx_k_victims), 0, 0, 1, 1}, + {&__pyx_n_s_w1, __pyx_k_w1, sizeof(__pyx_k_w1), 0, 0, 1, 1}, + {&__pyx_n_s_w2, __pyx_k_w2, sizeof(__pyx_k_w2), 0, 0, 1, 1}, + {&__pyx_n_s_w3, __pyx_k_w3, sizeof(__pyx_k_w3), 0, 0, 1, 1}, + {&__pyx_n_s_zeros, __pyx_k_zeros, sizeof(__pyx_k_zeros), 0, 0, 1, 1}, + {0, 0, 0, 0, 0, 0, 0} +}; +static int __Pyx_InitCachedBuiltins(void) { + __pyx_builtin_enumerate = __Pyx_GetBuiltinName(__pyx_n_s_enumerate); if (!__pyx_builtin_enumerate) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 41; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_builtin_sum = __Pyx_GetBuiltinName(__pyx_n_s_sum); if (!__pyx_builtin_sum) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 47; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_builtin_ValueError = __Pyx_GetBuiltinName(__pyx_n_s_ValueError); if (!__pyx_builtin_ValueError) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 218; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_builtin_range = __Pyx_GetBuiltinName(__pyx_n_s_range); if (!__pyx_builtin_range) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 231; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_builtin_RuntimeError = __Pyx_GetBuiltinName(__pyx_n_s_RuntimeError); if (!__pyx_builtin_RuntimeError) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 802; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + return 0; + __pyx_L1_error:; + return -1; +} + +static int __Pyx_InitCachedConstants(void) { + __Pyx_RefNannyDeclarations + __Pyx_RefNannySetupContext("__Pyx_InitCachedConstants", 0); + + /* "ml3.pyx":69 + * max_beta_add = float('-inf') + * # iterate over all victim nodes to find the optimal threshold + * for beta in np.arange(0.01, 1, .01): # <<<<<<<<<<<<<< + * thresh = log(beta/(3012.*(1.-beta))) + * seeds = probs<thresh + */ + __pyx_tuple_ = PyTuple_Pack(3, __pyx_float_0_01, __pyx_int_1, __pyx_float__01); if (unlikely(!__pyx_tuple_)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_tuple_); + __Pyx_GIVEREF(__pyx_tuple_); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":218 + * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) + * and not PyArray_CHKFLAGS(self, NPY_C_CONTIGUOUS)): + * raise ValueError(u"ndarray is not C contiguous") # <<<<<<<<<<<<<< + * + * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) + */ + __pyx_tuple__2 = PyTuple_Pack(1, __pyx_kp_u_ndarray_is_not_C_contiguous); if (unlikely(!__pyx_tuple__2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 218; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_tuple__2); + __Pyx_GIVEREF(__pyx_tuple__2); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":222 + * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) + * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)): + * raise ValueError(u"ndarray is not Fortran contiguous") # <<<<<<<<<<<<<< + * + * info.buf = PyArray_DATA(self) + */ + __pyx_tuple__3 = PyTuple_Pack(1, __pyx_kp_u_ndarray_is_not_Fortran_contiguou); if (unlikely(!__pyx_tuple__3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 222; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_tuple__3); + __Pyx_GIVEREF(__pyx_tuple__3); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":260 + * if ((descr.byteorder == c'>' and little_endian) or + * (descr.byteorder == c'<' and not little_endian)): + * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<< + * if t == NPY_BYTE: f = "b" + * elif t == NPY_UBYTE: f = "B" + */ + __pyx_tuple__4 = PyTuple_Pack(1, __pyx_kp_u_Non_native_byte_order_not_suppor); if (unlikely(!__pyx_tuple__4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 260; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_tuple__4); + __Pyx_GIVEREF(__pyx_tuple__4); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":802 + * + * if (end - f) - <int>(new_offset - offset[0]) < 15: + * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") # <<<<<<<<<<<<<< + * + * if ((child.byteorder == c'>' and little_endian) or + */ + __pyx_tuple__5 = PyTuple_Pack(1, __pyx_kp_u_Format_string_allocated_too_shor); if (unlikely(!__pyx_tuple__5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 802; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_tuple__5); + __Pyx_GIVEREF(__pyx_tuple__5); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":806 + * if ((child.byteorder == c'>' and little_endian) or + * (child.byteorder == c'<' and not little_endian)): + * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<< + * # One could encode it in the format string and have Cython + * # complain instead, BUT: < and > in format strings also imply + */ + __pyx_tuple__6 = PyTuple_Pack(1, __pyx_kp_u_Non_native_byte_order_not_suppor); if (unlikely(!__pyx_tuple__6)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 806; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_tuple__6); + __Pyx_GIVEREF(__pyx_tuple__6); + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":826 + * t = child.type_num + * if end - f < 5: + * raise RuntimeError(u"Format string allocated too short.") # <<<<<<<<<<<<<< + * + * # Until ticket #99 is fixed, use integers to avoid warnings + */ + __pyx_tuple__7 = PyTuple_Pack(1, __pyx_kp_u_Format_string_allocated_too_shor_2); if (unlikely(!__pyx_tuple__7)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 826; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_tuple__7); + __Pyx_GIVEREF(__pyx_tuple__7); + + /* "ml3.pyx":27 + * return result + * + * def ml3(dict root_victims, dict victims, dict non_victims, DTYPE_t age, # <<<<<<<<<<<<<< + * DTYPE_t alpha, DTYPE_t delta): + * cdef: + */ + __pyx_tuple__8 = PyTuple_Pack(38, __pyx_n_s_root_victims, __pyx_n_s_victims, __pyx_n_s_non_victims, __pyx_n_s_age, __pyx_n_s_alpha, __pyx_n_s_delta, __pyx_n_s_n_roots, __pyx_n_s_n_victims, __pyx_n_s_roots, __pyx_n_s_i, __pyx_n_s_dist, __pyx_n_s_dt, __pyx_n_s_t, __pyx_n_s_l, __pyx_n_s_beta, __pyx_n_s_ll, __pyx_n_s_beta_add, __pyx_n_s_max_beta, __pyx_n_s_max_beta_add, __pyx_n_s_parents, __pyx_n_s_failures, __pyx_n_s_successes, __pyx_n_s_probs, __pyx_n_s_probs_fail, __pyx_n_s_parent_dists, __pyx_n_s_parent_dts, __pyx_n_s_dists, __pyx_n_s_dts, __pyx_n_s_s, __pyx_n_s_prob, __pyx_n_s_thresh, __pyx_n_s_seeds, __pyx_n_s_non_seeds, __pyx_n_s_max_roots, __pyx_n_s_prnt, __pyx_n_s_w1, __pyx_n_s_w2, __pyx_n_s_w3); if (unlikely(!__pyx_tuple__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_tuple__8); + __Pyx_GIVEREF(__pyx_tuple__8); + __pyx_codeobj__9 = (PyObject*)__Pyx_PyCode_New(6, 0, 38, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__8, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_Users_ben_Documents_Cascade_Pro, __pyx_n_s_ml3, 27, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__9)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_RefNannyFinishContext(); + return 0; + __pyx_L1_error:; + __Pyx_RefNannyFinishContext(); + return -1; +} + +static int __Pyx_InitGlobals(void) { + if (__Pyx_InitStrings(__pyx_string_tab) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; + __pyx_float__01 = PyFloat_FromDouble(.01); if (unlikely(!__pyx_float__01)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_float_0_01 = PyFloat_FromDouble(0.01); if (unlikely(!__pyx_float_0_01)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_int_1 = PyInt_FromLong(1); if (unlikely(!__pyx_int_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + return 0; + __pyx_L1_error:; + return -1; +} + +#if PY_MAJOR_VERSION < 3 +PyMODINIT_FUNC initml3(void); /*proto*/ +PyMODINIT_FUNC initml3(void) +#else +PyMODINIT_FUNC PyInit_ml3(void); /*proto*/ +PyMODINIT_FUNC PyInit_ml3(void) +#endif +{ + PyObject *__pyx_t_1 = NULL; + PyObject *__pyx_t_2 = NULL; + int __pyx_lineno = 0; + const char *__pyx_filename = NULL; + int __pyx_clineno = 0; + __Pyx_RefNannyDeclarations + #if CYTHON_REFNANNY + __Pyx_RefNanny = __Pyx_RefNannyImportAPI("refnanny"); + if (!__Pyx_RefNanny) { + PyErr_Clear(); + __Pyx_RefNanny = __Pyx_RefNannyImportAPI("Cython.Runtime.refnanny"); + if (!__Pyx_RefNanny) + Py_FatalError("failed to import 'refnanny' module"); + } + #endif + __Pyx_RefNannySetupContext("PyMODINIT_FUNC PyInit_ml3(void)", 0); + if ( __Pyx_check_binary_version() < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_empty_tuple = PyTuple_New(0); if (unlikely(!__pyx_empty_tuple)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_empty_bytes = PyBytes_FromStringAndSize("", 0); if (unlikely(!__pyx_empty_bytes)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #ifdef __Pyx_CyFunction_USED + if (__Pyx_CyFunction_init() < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #endif + #ifdef __Pyx_FusedFunction_USED + if (__pyx_FusedFunction_init() < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #endif + #ifdef __Pyx_Generator_USED + if (__pyx_Generator_init() < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #endif + /*--- Library function declarations ---*/ + /*--- Threads initialization code ---*/ + #if defined(__PYX_FORCE_INIT_THREADS) && __PYX_FORCE_INIT_THREADS + #ifdef WITH_THREAD /* Python build with threading support? */ + PyEval_InitThreads(); + #endif + #endif + /*--- Module creation code ---*/ + #if PY_MAJOR_VERSION < 3 + __pyx_m = Py_InitModule4("ml3", __pyx_methods, 0, 0, PYTHON_API_VERSION); Py_XINCREF(__pyx_m); + #else + __pyx_m = PyModule_Create(&__pyx_moduledef); + #endif + if (unlikely(!__pyx_m)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_d = PyModule_GetDict(__pyx_m); if (unlikely(!__pyx_d)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + Py_INCREF(__pyx_d); + __pyx_b = PyImport_AddModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_b)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #if CYTHON_COMPILING_IN_PYPY + Py_INCREF(__pyx_b); + #endif + if (PyObject_SetAttrString(__pyx_m, "__builtins__", __pyx_b) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; + /*--- Initialize various global constants etc. ---*/ + if (unlikely(__Pyx_InitGlobals() < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #if PY_MAJOR_VERSION < 3 && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT) + if (__Pyx_init_sys_getdefaultencoding_params() < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #endif + if (__pyx_module_is_main_ml3) { + if (PyObject_SetAttrString(__pyx_m, "__name__", __pyx_n_s_main) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; + } + #if PY_MAJOR_VERSION >= 3 + { + PyObject *modules = PyImport_GetModuleDict(); if (unlikely(!modules)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (!PyDict_GetItemString(modules, "ml3")) { + if (unlikely(PyDict_SetItemString(modules, "ml3", __pyx_m) < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + } + } + #endif + /*--- Builtin init code ---*/ + if (unlikely(__Pyx_InitCachedBuiltins() < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + /*--- Constants init code ---*/ + if (unlikely(__Pyx_InitCachedConstants() < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + /*--- Global init code ---*/ + /*--- Variable export code ---*/ + /*--- Function export code ---*/ + /*--- Type init code ---*/ + /*--- Type import code ---*/ + __pyx_ptype_7cpython_4type_type = __Pyx_ImportType(__Pyx_BUILTIN_MODULE_NAME, "type", + #if CYTHON_COMPILING_IN_PYPY + sizeof(PyTypeObject), + #else + sizeof(PyHeapTypeObject), + #endif + 0); if (unlikely(!__pyx_ptype_7cpython_4type_type)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 9; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_ptype_5numpy_dtype = __Pyx_ImportType("numpy", "dtype", sizeof(PyArray_Descr), 0); if (unlikely(!__pyx_ptype_5numpy_dtype)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 155; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_ptype_5numpy_flatiter = __Pyx_ImportType("numpy", "flatiter", sizeof(PyArrayIterObject), 0); if (unlikely(!__pyx_ptype_5numpy_flatiter)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 168; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_ptype_5numpy_broadcast = __Pyx_ImportType("numpy", "broadcast", sizeof(PyArrayMultiIterObject), 0); if (unlikely(!__pyx_ptype_5numpy_broadcast)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_ptype_5numpy_ndarray = __Pyx_ImportType("numpy", "ndarray", sizeof(PyArrayObject), 0); if (unlikely(!__pyx_ptype_5numpy_ndarray)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 181; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_ptype_5numpy_ufunc = __Pyx_ImportType("numpy", "ufunc", sizeof(PyUFuncObject), 0); if (unlikely(!__pyx_ptype_5numpy_ufunc)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 864; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + /*--- Variable import code ---*/ + /*--- Function import code ---*/ + /*--- Execution code ---*/ + + /* "ml3.pyx":2 + * # cython: boundscheck=False, cdivision=True + * import numpy as np # <<<<<<<<<<<<<< + * cimport numpy as np + * from libc.math cimport log, exp + */ + __pyx_t_1 = __Pyx_Import(__pyx_n_s_numpy, 0, -1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 2; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_1); + if (PyDict_SetItem(__pyx_d, __pyx_n_s_np, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 2; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; + + /* "ml3.pyx":6 + * from libc.math cimport log, exp + * + * DTYPE = np.float64 # <<<<<<<<<<<<<< + * ctypedef np.float_t DTYPE_t + * + */ + __pyx_t_1 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 6; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_1); + __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_float64); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 6; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_2); + __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; + if (PyDict_SetItem(__pyx_d, __pyx_n_s_DTYPE, __pyx_t_2) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 6; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; + + /* "ml3.pyx":27 + * return result + * + * def ml3(dict root_victims, dict victims, dict non_victims, DTYPE_t age, # <<<<<<<<<<<<<< + * DTYPE_t alpha, DTYPE_t delta): + * cdef: + */ + __pyx_t_2 = PyCFunction_NewEx(&__pyx_mdef_3ml3_1ml3, NULL, __pyx_n_s_ml3); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_2); + if (PyDict_SetItem(__pyx_d, __pyx_n_s_ml3, __pyx_t_2) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; + + /* "ml3.pyx":1 + * # cython: boundscheck=False, cdivision=True # <<<<<<<<<<<<<< + * import numpy as np + * cimport numpy as np + */ + __pyx_t_2 = PyDict_New(); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_2); + if (PyDict_SetItem(__pyx_d, __pyx_n_s_test, __pyx_t_2) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; + + /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":979 + * arr.base = baseptr + * + * cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<< + * if arr.base is NULL: + * return None + */ + + /*--- Wrapped vars code ---*/ + + goto __pyx_L0; + __pyx_L1_error:; + __Pyx_XDECREF(__pyx_t_1); + __Pyx_XDECREF(__pyx_t_2); + if (__pyx_m) { + if (__pyx_d) { + __Pyx_AddTraceback("init ml3", __pyx_clineno, __pyx_lineno, __pyx_filename); + } + Py_DECREF(__pyx_m); __pyx_m = 0; + } else if (!PyErr_Occurred()) { + PyErr_SetString(PyExc_ImportError, "init ml3"); + } + __pyx_L0:; + __Pyx_RefNannyFinishContext(); + #if PY_MAJOR_VERSION < 3 + return; + #else + return __pyx_m; + #endif +} + +/* --- Runtime support code --- */ +#if CYTHON_REFNANNY +static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname) { + PyObject *m = NULL, *p = NULL; + void *r = NULL; + m = PyImport_ImportModule((char *)modname); + if (!m) goto end; + p = PyObject_GetAttrString(m, (char *)"RefNannyAPI"); + if (!p) goto end; + r = PyLong_AsVoidPtr(p); +end: + Py_XDECREF(p); + Py_XDECREF(m); + return (__Pyx_RefNannyAPIStruct *)r; +} +#endif + +static PyObject *__Pyx_GetBuiltinName(PyObject *name) { + PyObject* result = __Pyx_PyObject_GetAttrStr(__pyx_b, name); + if (unlikely(!result)) { + PyErr_Format(PyExc_NameError, +#if PY_MAJOR_VERSION >= 3 + "name '%U' is not defined", name); +#else + "name '%.200s' is not defined", PyString_AS_STRING(name)); +#endif + } + return result; +} + +static void __Pyx_RaiseArgtupleInvalid( + const char* func_name, + int exact, + Py_ssize_t num_min, + Py_ssize_t num_max, + Py_ssize_t num_found) +{ + Py_ssize_t num_expected; + const char *more_or_less; + if (num_found < num_min) { + num_expected = num_min; + more_or_less = "at least"; + } else { + num_expected = num_max; + more_or_less = "at most"; + } + if (exact) { + more_or_less = "exactly"; + } + PyErr_Format(PyExc_TypeError, + "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)", + func_name, more_or_less, num_expected, + (num_expected == 1) ? "" : "s", num_found); +} + +static void __Pyx_RaiseDoubleKeywordsError( + const char* func_name, + PyObject* kw_name) +{ + PyErr_Format(PyExc_TypeError, + #if PY_MAJOR_VERSION >= 3 + "%s() got multiple values for keyword argument '%U'", func_name, kw_name); + #else + "%s() got multiple values for keyword argument '%s'", func_name, + PyString_AsString(kw_name)); + #endif +} + +static int __Pyx_ParseOptionalKeywords( + PyObject *kwds, + PyObject **argnames[], + PyObject *kwds2, + PyObject *values[], + Py_ssize_t num_pos_args, + const char* function_name) +{ + PyObject *key = 0, *value = 0; + Py_ssize_t pos = 0; + PyObject*** name; + PyObject*** first_kw_arg = argnames + num_pos_args; + while (PyDict_Next(kwds, &pos, &key, &value)) { + name = first_kw_arg; + while (*name && (**name != key)) name++; + if (*name) { + values[name-argnames] = value; + continue; + } + name = first_kw_arg; + #if PY_MAJOR_VERSION < 3 + if (likely(PyString_CheckExact(key)) || likely(PyString_Check(key))) { + while (*name) { + if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key)) + && _PyString_Eq(**name, key)) { + values[name-argnames] = value; + break; + } + name++; + } + if (*name) continue; + else { + PyObject*** argname = argnames; + while (argname != first_kw_arg) { + if ((**argname == key) || ( + (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key)) + && _PyString_Eq(**argname, key))) { + goto arg_passed_twice; + } + argname++; + } + } + } else + #endif + if (likely(PyUnicode_Check(key))) { + while (*name) { + int cmp = (**name == key) ? 0 : + #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 + (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : + #endif + PyUnicode_Compare(**name, key); + if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; + if (cmp == 0) { + values[name-argnames] = value; + break; + } + name++; + } + if (*name) continue; + else { + PyObject*** argname = argnames; + while (argname != first_kw_arg) { + int cmp = (**argname == key) ? 0 : + #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 + (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : + #endif + PyUnicode_Compare(**argname, key); + if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; + if (cmp == 0) goto arg_passed_twice; + argname++; + } + } + } else + goto invalid_keyword_type; + if (kwds2) { + if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad; + } else { + goto invalid_keyword; + } + } + return 0; +arg_passed_twice: + __Pyx_RaiseDoubleKeywordsError(function_name, key); + goto bad; +invalid_keyword_type: + PyErr_Format(PyExc_TypeError, + "%.200s() keywords must be strings", function_name); + goto bad; +invalid_keyword: + PyErr_Format(PyExc_TypeError, + #if PY_MAJOR_VERSION < 3 + "%.200s() got an unexpected keyword argument '%.200s'", + function_name, PyString_AsString(key)); + #else + "%s() got an unexpected keyword argument '%U'", + function_name, key); + #endif +bad: + return -1; +} + +static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) { + PyErr_Format(PyExc_TypeError, + "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)", + name, type->tp_name, Py_TYPE(obj)->tp_name); +} +static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, + const char *name, int exact) +{ + if (unlikely(!type)) { + PyErr_SetString(PyExc_SystemError, "Missing type object"); + return 0; + } + if (none_allowed && obj == Py_None) return 1; + else if (exact) { + if (likely(Py_TYPE(obj) == type)) return 1; + #if PY_MAJOR_VERSION == 2 + else if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1; + #endif + } + else { + if (likely(PyObject_TypeCheck(obj, type))) return 1; + } + __Pyx_RaiseArgumentTypeInvalid(name, obj, type); + return 0; +} + +static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) { + PyObject *result; +#if CYTHON_COMPILING_IN_CPYTHON + result = PyDict_GetItem(__pyx_d, name); + if (likely(result)) { + Py_INCREF(result); + } else { +#else + result = PyObject_GetItem(__pyx_d, name); + if (!result) { + PyErr_Clear(); +#endif + result = __Pyx_GetBuiltinName(name); + } + return result; +} + +#if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) { + PyObject *result; + ternaryfunc call = func->ob_type->tp_call; + if (unlikely(!call)) + return PyObject_Call(func, arg, kw); + if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) + return NULL; + result = (*call)(func, arg, kw); + Py_LeaveRecursiveCall(); + if (unlikely(!result) && unlikely(!PyErr_Occurred())) { + PyErr_SetString( + PyExc_SystemError, + "NULL result without error in PyObject_Call"); + } + return result; +} +#endif + +static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { + if (unlikely(!type)) { + PyErr_SetString(PyExc_SystemError, "Missing type object"); + return 0; + } + if (likely(PyObject_TypeCheck(obj, type))) + return 1; + PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", + Py_TYPE(obj)->tp_name, type->tp_name); + return 0; +} + +static CYTHON_INLINE int __Pyx_IsLittleEndian(void) { + unsigned int n = 1; + return *(unsigned char*)(&n) != 0; +} +static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, + __Pyx_BufFmt_StackElem* stack, + __Pyx_TypeInfo* type) { + stack[0].field = &ctx->root; + stack[0].parent_offset = 0; + ctx->root.type = type; + ctx->root.name = "buffer dtype"; + ctx->root.offset = 0; + ctx->head = stack; + ctx->head->field = &ctx->root; + ctx->fmt_offset = 0; + ctx->head->parent_offset = 0; + ctx->new_packmode = '@'; + ctx->enc_packmode = '@'; + ctx->new_count = 1; + ctx->enc_count = 0; + ctx->enc_type = 0; + ctx->is_complex = 0; + ctx->is_valid_array = 0; + ctx->struct_alignment = 0; + while (type->typegroup == 'S') { + ++ctx->head; + ctx->head->field = type->fields; + ctx->head->parent_offset = 0; + type = type->fields->type; + } +} +static int __Pyx_BufFmt_ParseNumber(const char** ts) { + int count; + const char* t = *ts; + if (*t < '0' || *t > '9') { + return -1; + } else { + count = *t++ - '0'; + while (*t >= '0' && *t < '9') { + count *= 10; + count += *t++ - '0'; + } + } + *ts = t; + return count; +} +static int __Pyx_BufFmt_ExpectNumber(const char **ts) { + int number = __Pyx_BufFmt_ParseNumber(ts); + if (number == -1) + PyErr_Format(PyExc_ValueError,\ + "Does not understand character buffer dtype format string ('%c')", **ts); + return number; +} +static void __Pyx_BufFmt_RaiseUnexpectedChar(char ch) { + PyErr_Format(PyExc_ValueError, + "Unexpected format string character: '%c'", ch); +} +static const char* __Pyx_BufFmt_DescribeTypeChar(char ch, int is_complex) { + switch (ch) { + case 'c': return "'char'"; + case 'b': return "'signed char'"; + case 'B': return "'unsigned char'"; + case 'h': return "'short'"; + case 'H': return "'unsigned short'"; + case 'i': return "'int'"; + case 'I': return "'unsigned int'"; + case 'l': return "'long'"; + case 'L': return "'unsigned long'"; + case 'q': return "'long long'"; + case 'Q': return "'unsigned long long'"; + case 'f': return (is_complex ? "'complex float'" : "'float'"); + case 'd': return (is_complex ? "'complex double'" : "'double'"); + case 'g': return (is_complex ? "'complex long double'" : "'long double'"); + case 'T': return "a struct"; + case 'O': return "Python object"; + case 'P': return "a pointer"; + case 's': case 'p': return "a string"; + case 0: return "end"; + default: return "unparseable format string"; + } +} +static size_t __Pyx_BufFmt_TypeCharToStandardSize(char ch, int is_complex) { + switch (ch) { + case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; + case 'h': case 'H': return 2; + case 'i': case 'I': case 'l': case 'L': return 4; + case 'q': case 'Q': return 8; + case 'f': return (is_complex ? 8 : 4); + case 'd': return (is_complex ? 16 : 8); + case 'g': { + PyErr_SetString(PyExc_ValueError, "Python does not define a standard format string size for long double ('g').."); + return 0; + } + case 'O': case 'P': return sizeof(void*); + default: + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } +} +static size_t __Pyx_BufFmt_TypeCharToNativeSize(char ch, int is_complex) { + switch (ch) { + case 'c': case 'b': case 'B': case 's': case 'p': return 1; + case 'h': case 'H': return sizeof(short); + case 'i': case 'I': return sizeof(int); + case 'l': case 'L': return sizeof(long); + #ifdef HAVE_LONG_LONG + case 'q': case 'Q': return sizeof(PY_LONG_LONG); + #endif + case 'f': return sizeof(float) * (is_complex ? 2 : 1); + case 'd': return sizeof(double) * (is_complex ? 2 : 1); + case 'g': return sizeof(long double) * (is_complex ? 2 : 1); + case 'O': case 'P': return sizeof(void*); + default: { + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } + } +} +typedef struct { char c; short x; } __Pyx_st_short; +typedef struct { char c; int x; } __Pyx_st_int; +typedef struct { char c; long x; } __Pyx_st_long; +typedef struct { char c; float x; } __Pyx_st_float; +typedef struct { char c; double x; } __Pyx_st_double; +typedef struct { char c; long double x; } __Pyx_st_longdouble; +typedef struct { char c; void *x; } __Pyx_st_void_p; +#ifdef HAVE_LONG_LONG +typedef struct { char c; PY_LONG_LONG x; } __Pyx_st_longlong; +#endif +static size_t __Pyx_BufFmt_TypeCharToAlignment(char ch, CYTHON_UNUSED int is_complex) { + switch (ch) { + case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; + case 'h': case 'H': return sizeof(__Pyx_st_short) - sizeof(short); + case 'i': case 'I': return sizeof(__Pyx_st_int) - sizeof(int); + case 'l': case 'L': return sizeof(__Pyx_st_long) - sizeof(long); +#ifdef HAVE_LONG_LONG + case 'q': case 'Q': return sizeof(__Pyx_st_longlong) - sizeof(PY_LONG_LONG); +#endif + case 'f': return sizeof(__Pyx_st_float) - sizeof(float); + case 'd': return sizeof(__Pyx_st_double) - sizeof(double); + case 'g': return sizeof(__Pyx_st_longdouble) - sizeof(long double); + case 'P': case 'O': return sizeof(__Pyx_st_void_p) - sizeof(void*); + default: + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } +} +/* These are for computing the padding at the end of the struct to align + on the first member of the struct. This will probably the same as above, + but we don't have any guarantees. + */ +typedef struct { short x; char c; } __Pyx_pad_short; +typedef struct { int x; char c; } __Pyx_pad_int; +typedef struct { long x; char c; } __Pyx_pad_long; +typedef struct { float x; char c; } __Pyx_pad_float; +typedef struct { double x; char c; } __Pyx_pad_double; +typedef struct { long double x; char c; } __Pyx_pad_longdouble; +typedef struct { void *x; char c; } __Pyx_pad_void_p; +#ifdef HAVE_LONG_LONG +typedef struct { PY_LONG_LONG x; char c; } __Pyx_pad_longlong; +#endif +static size_t __Pyx_BufFmt_TypeCharToPadding(char ch, CYTHON_UNUSED int is_complex) { + switch (ch) { + case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; + case 'h': case 'H': return sizeof(__Pyx_pad_short) - sizeof(short); + case 'i': case 'I': return sizeof(__Pyx_pad_int) - sizeof(int); + case 'l': case 'L': return sizeof(__Pyx_pad_long) - sizeof(long); +#ifdef HAVE_LONG_LONG + case 'q': case 'Q': return sizeof(__Pyx_pad_longlong) - sizeof(PY_LONG_LONG); +#endif + case 'f': return sizeof(__Pyx_pad_float) - sizeof(float); + case 'd': return sizeof(__Pyx_pad_double) - sizeof(double); + case 'g': return sizeof(__Pyx_pad_longdouble) - sizeof(long double); + case 'P': case 'O': return sizeof(__Pyx_pad_void_p) - sizeof(void*); + default: + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } +} +static char __Pyx_BufFmt_TypeCharToGroup(char ch, int is_complex) { + switch (ch) { + case 'c': + return 'H'; + case 'b': case 'h': case 'i': + case 'l': case 'q': case 's': case 'p': + return 'I'; + case 'B': case 'H': case 'I': case 'L': case 'Q': + return 'U'; + case 'f': case 'd': case 'g': + return (is_complex ? 'C' : 'R'); + case 'O': + return 'O'; + case 'P': + return 'P'; + default: { + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } + } +} +static void __Pyx_BufFmt_RaiseExpected(__Pyx_BufFmt_Context* ctx) { + if (ctx->head == NULL || ctx->head->field == &ctx->root) { + const char* expected; + const char* quote; + if (ctx->head == NULL) { + expected = "end"; + quote = ""; + } else { + expected = ctx->head->field->type->name; + quote = "'"; + } + PyErr_Format(PyExc_ValueError, + "Buffer dtype mismatch, expected %s%s%s but got %s", + quote, expected, quote, + __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex)); + } else { + __Pyx_StructField* field = ctx->head->field; + __Pyx_StructField* parent = (ctx->head - 1)->field; + PyErr_Format(PyExc_ValueError, + "Buffer dtype mismatch, expected '%s' but got %s in '%s.%s'", + field->type->name, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex), + parent->type->name, field->name); + } +} +static int __Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context* ctx) { + char group; + size_t size, offset, arraysize = 1; + if (ctx->enc_type == 0) return 0; + if (ctx->head->field->type->arraysize[0]) { + int i, ndim = 0; + if (ctx->enc_type == 's' || ctx->enc_type == 'p') { + ctx->is_valid_array = ctx->head->field->type->ndim == 1; + ndim = 1; + if (ctx->enc_count != ctx->head->field->type->arraysize[0]) { + PyErr_Format(PyExc_ValueError, + "Expected a dimension of size %zu, got %zu", + ctx->head->field->type->arraysize[0], ctx->enc_count); + return -1; + } + } + if (!ctx->is_valid_array) { + PyErr_Format(PyExc_ValueError, "Expected %d dimensions, got %d", + ctx->head->field->type->ndim, ndim); + return -1; + } + for (i = 0; i < ctx->head->field->type->ndim; i++) { + arraysize *= ctx->head->field->type->arraysize[i]; + } + ctx->is_valid_array = 0; + ctx->enc_count = 1; + } + group = __Pyx_BufFmt_TypeCharToGroup(ctx->enc_type, ctx->is_complex); + do { + __Pyx_StructField* field = ctx->head->field; + __Pyx_TypeInfo* type = field->type; + if (ctx->enc_packmode == '@' || ctx->enc_packmode == '^') { + size = __Pyx_BufFmt_TypeCharToNativeSize(ctx->enc_type, ctx->is_complex); + } else { + size = __Pyx_BufFmt_TypeCharToStandardSize(ctx->enc_type, ctx->is_complex); + } + if (ctx->enc_packmode == '@') { + size_t align_at = __Pyx_BufFmt_TypeCharToAlignment(ctx->enc_type, ctx->is_complex); + size_t align_mod_offset; + if (align_at == 0) return -1; + align_mod_offset = ctx->fmt_offset % align_at; + if (align_mod_offset > 0) ctx->fmt_offset += align_at - align_mod_offset; + if (ctx->struct_alignment == 0) + ctx->struct_alignment = __Pyx_BufFmt_TypeCharToPadding(ctx->enc_type, + ctx->is_complex); + } + if (type->size != size || type->typegroup != group) { + if (type->typegroup == 'C' && type->fields != NULL) { + size_t parent_offset = ctx->head->parent_offset + field->offset; + ++ctx->head; + ctx->head->field = type->fields; + ctx->head->parent_offset = parent_offset; + continue; + } + if ((type->typegroup == 'H' || group == 'H') && type->size == size) { + } else { + __Pyx_BufFmt_RaiseExpected(ctx); + return -1; + } + } + offset = ctx->head->parent_offset + field->offset; + if (ctx->fmt_offset != offset) { + PyErr_Format(PyExc_ValueError, + "Buffer dtype mismatch; next field is at offset %" CYTHON_FORMAT_SSIZE_T "d but %" CYTHON_FORMAT_SSIZE_T "d expected", + (Py_ssize_t)ctx->fmt_offset, (Py_ssize_t)offset); + return -1; + } + ctx->fmt_offset += size; + if (arraysize) + ctx->fmt_offset += (arraysize - 1) * size; + --ctx->enc_count; + while (1) { + if (field == &ctx->root) { + ctx->head = NULL; + if (ctx->enc_count != 0) { + __Pyx_BufFmt_RaiseExpected(ctx); + return -1; + } + break; + } + ctx->head->field = ++field; + if (field->type == NULL) { + --ctx->head; + field = ctx->head->field; + continue; + } else if (field->type->typegroup == 'S') { + size_t parent_offset = ctx->head->parent_offset + field->offset; + if (field->type->fields->type == NULL) continue; + field = field->type->fields; + ++ctx->head; + ctx->head->field = field; + ctx->head->parent_offset = parent_offset; + break; + } else { + break; + } + } + } while (ctx->enc_count); + ctx->enc_type = 0; + ctx->is_complex = 0; + return 0; +} +static CYTHON_INLINE PyObject * +__pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp) +{ + const char *ts = *tsp; + int i = 0, number; + int ndim = ctx->head->field->type->ndim; +; + ++ts; + if (ctx->new_count != 1) { + PyErr_SetString(PyExc_ValueError, + "Cannot handle repeated arrays in format string"); + return NULL; + } + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + while (*ts && *ts != ')') { + switch (*ts) { + case ' ': case '\f': case '\r': case '\n': case '\t': case '\v': continue; + default: break; + } + number = __Pyx_BufFmt_ExpectNumber(&ts); + if (number == -1) return NULL; + if (i < ndim && (size_t) number != ctx->head->field->type->arraysize[i]) + return PyErr_Format(PyExc_ValueError, + "Expected a dimension of size %zu, got %d", + ctx->head->field->type->arraysize[i], number); + if (*ts != ',' && *ts != ')') + return PyErr_Format(PyExc_ValueError, + "Expected a comma in format string, got '%c'", *ts); + if (*ts == ',') ts++; + i++; + } + if (i != ndim) + return PyErr_Format(PyExc_ValueError, "Expected %d dimension(s), got %d", + ctx->head->field->type->ndim, i); + if (!*ts) { + PyErr_SetString(PyExc_ValueError, + "Unexpected end of format string, expected ')'"); + return NULL; + } + ctx->is_valid_array = 1; + ctx->new_count = 1; + *tsp = ++ts; + return Py_None; +} +static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts) { + int got_Z = 0; + while (1) { + switch(*ts) { + case 0: + if (ctx->enc_type != 0 && ctx->head == NULL) { + __Pyx_BufFmt_RaiseExpected(ctx); + return NULL; + } + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + if (ctx->head != NULL) { + __Pyx_BufFmt_RaiseExpected(ctx); + return NULL; + } + return ts; + case ' ': + case '\r': + case '\n': + ++ts; + break; + case '<': + if (!__Pyx_IsLittleEndian()) { + PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler"); + return NULL; + } + ctx->new_packmode = '='; + ++ts; + break; + case '>': + case '!': + if (__Pyx_IsLittleEndian()) { + PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler"); + return NULL; + } + ctx->new_packmode = '='; + ++ts; + break; + case '=': + case '@': + case '^': + ctx->new_packmode = *ts++; + break; + case 'T': + { + const char* ts_after_sub; + size_t i, struct_count = ctx->new_count; + size_t struct_alignment = ctx->struct_alignment; + ctx->new_count = 1; + ++ts; + if (*ts != '{') { + PyErr_SetString(PyExc_ValueError, "Buffer acquisition: Expected '{' after 'T'"); + return NULL; + } + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->enc_type = 0; + ctx->enc_count = 0; + ctx->struct_alignment = 0; + ++ts; + ts_after_sub = ts; + for (i = 0; i != struct_count; ++i) { + ts_after_sub = __Pyx_BufFmt_CheckString(ctx, ts); + if (!ts_after_sub) return NULL; + } + ts = ts_after_sub; + if (struct_alignment) ctx->struct_alignment = struct_alignment; + } + break; + case '}': + { + size_t alignment = ctx->struct_alignment; + ++ts; + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->enc_type = 0; + if (alignment && ctx->fmt_offset % alignment) { + ctx->fmt_offset += alignment - (ctx->fmt_offset % alignment); + } + } + return ts; + case 'x': + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->fmt_offset += ctx->new_count; + ctx->new_count = 1; + ctx->enc_count = 0; + ctx->enc_type = 0; + ctx->enc_packmode = ctx->new_packmode; + ++ts; + break; + case 'Z': + got_Z = 1; + ++ts; + if (*ts != 'f' && *ts != 'd' && *ts != 'g') { + __Pyx_BufFmt_RaiseUnexpectedChar('Z'); + return NULL; + } + case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I': + case 'l': case 'L': case 'q': case 'Q': + case 'f': case 'd': case 'g': + case 'O': case 'p': + if (ctx->enc_type == *ts && got_Z == ctx->is_complex && + ctx->enc_packmode == ctx->new_packmode) { + ctx->enc_count += ctx->new_count; + ctx->new_count = 1; + got_Z = 0; + ++ts; + break; + } + case 's': + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->enc_count = ctx->new_count; + ctx->enc_packmode = ctx->new_packmode; + ctx->enc_type = *ts; + ctx->is_complex = got_Z; + ++ts; + ctx->new_count = 1; + got_Z = 0; + break; + case ':': + ++ts; + while(*ts != ':') ++ts; + ++ts; + break; + case '(': + if (!__pyx_buffmt_parse_array(ctx, &ts)) return NULL; + break; + default: + { + int number = __Pyx_BufFmt_ExpectNumber(&ts); + if (number == -1) return NULL; + ctx->new_count = (size_t)number; + } + } + } +} +static CYTHON_INLINE void __Pyx_ZeroBuffer(Py_buffer* buf) { + buf->buf = NULL; + buf->obj = NULL; + buf->strides = __Pyx_zeros; + buf->shape = __Pyx_zeros; + buf->suboffsets = __Pyx_minusones; +} +static CYTHON_INLINE int __Pyx_GetBufferAndValidate( + Py_buffer* buf, PyObject* obj, __Pyx_TypeInfo* dtype, int flags, + int nd, int cast, __Pyx_BufFmt_StackElem* stack) +{ + if (obj == Py_None || obj == NULL) { + __Pyx_ZeroBuffer(buf); + return 0; + } + buf->buf = NULL; + if (__Pyx_GetBuffer(obj, buf, flags) == -1) goto fail; + if (buf->ndim != nd) { + PyErr_Format(PyExc_ValueError, + "Buffer has wrong number of dimensions (expected %d, got %d)", + nd, buf->ndim); + goto fail; + } + if (!cast) { + __Pyx_BufFmt_Context ctx; + __Pyx_BufFmt_Init(&ctx, stack, dtype); + if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail; + } + if ((unsigned)buf->itemsize != dtype->size) { + PyErr_Format(PyExc_ValueError, + "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "d byte%s) does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "d byte%s)", + buf->itemsize, (buf->itemsize > 1) ? "s" : "", + dtype->name, (Py_ssize_t)dtype->size, (dtype->size > 1) ? "s" : ""); + goto fail; + } + if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones; + return 0; +fail:; + __Pyx_ZeroBuffer(buf); + return -1; +} +static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) { + if (info->buf == NULL) return; + if (info->suboffsets == __Pyx_minusones) info->suboffsets = NULL; + __Pyx_ReleaseBuffer(info); +} + +static CYTHON_INLINE int __Pyx_IterFinish(void) { +#if CYTHON_COMPILING_IN_CPYTHON + PyThreadState *tstate = PyThreadState_GET(); + PyObject* exc_type = tstate->curexc_type; + if (unlikely(exc_type)) { + if (likely(exc_type == PyExc_StopIteration) || PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration)) { + PyObject *exc_value, *exc_tb; + exc_value = tstate->curexc_value; + exc_tb = tstate->curexc_traceback; + tstate->curexc_type = 0; + tstate->curexc_value = 0; + tstate->curexc_traceback = 0; + Py_DECREF(exc_type); + Py_XDECREF(exc_value); + Py_XDECREF(exc_tb); + return 0; + } else { + return -1; + } + } + return 0; +#else + if (unlikely(PyErr_Occurred())) { + if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) { + PyErr_Clear(); + return 0; + } else { + return -1; + } + } + return 0; +#endif +} + +#if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) { + PyObject *self, *result; + PyCFunction cfunc; + cfunc = PyCFunction_GET_FUNCTION(func); + self = PyCFunction_GET_SELF(func); + if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) + return NULL; + result = cfunc(self, arg); + Py_LeaveRecursiveCall(); + if (unlikely(!result) && unlikely(!PyErr_Occurred())) { + PyErr_SetString( + PyExc_SystemError, + "NULL result without error in PyObject_Call"); + } + return result; +} +#endif + +#if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func) { +#ifdef __Pyx_CyFunction_USED + if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) { +#else + if (likely(PyCFunction_Check(func))) { +#endif + if (likely(PyCFunction_GET_FLAGS(func) & METH_NOARGS)) { + return __Pyx_PyObject_CallMethO(func, NULL); + } + } + return __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL); +} +#endif + +#if CYTHON_COMPILING_IN_CPYTHON +static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) { + PyObject *result; + PyObject *args = PyTuple_New(1); + if (unlikely(!args)) return NULL; + Py_INCREF(arg); + PyTuple_SET_ITEM(args, 0, arg); + result = __Pyx_PyObject_Call(func, args, NULL); + Py_DECREF(args); + return result; +} +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { +#ifdef __Pyx_CyFunction_USED + if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) { +#else + if (likely(PyCFunction_Check(func))) { +#endif + if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) { + return __Pyx_PyObject_CallMethO(func, arg); + } + } + return __Pyx__PyObject_CallOneArg(func, arg); +} +#else +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { + PyObject* args = PyTuple_Pack(1, arg); + return (likely(args)) ? __Pyx_PyObject_Call(func, args, NULL) : NULL; +} +#endif + +static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name) { + PyObject *method, *result = NULL; + method = __Pyx_PyObject_GetAttrStr(obj, method_name); + if (unlikely(!method)) goto bad; +#if CYTHON_COMPILING_IN_CPYTHON + if (likely(PyMethod_Check(method))) { + PyObject *self = PyMethod_GET_SELF(method); + if (likely(self)) { + PyObject *function = PyMethod_GET_FUNCTION(method); + result = __Pyx_PyObject_CallOneArg(function, self); + Py_DECREF(method); + return result; + } + } +#endif + result = __Pyx_PyObject_CallNoArg(method); + Py_DECREF(method); +bad: + return result; +} + +static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { + PyErr_Format(PyExc_ValueError, + "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", + index, (index == 1) ? "" : "s"); +} + +static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { + PyErr_Format(PyExc_ValueError, + "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); +} + +static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) { + if (unlikely(retval)) { + Py_DECREF(retval); + __Pyx_RaiseTooManyValuesError(expected); + return -1; + } else { + return __Pyx_IterFinish(); + } + return 0; +} + +static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { + PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); +} + +static void __Pyx_UnpackTupleError(PyObject *t, Py_ssize_t index) { + if (t == Py_None) { + __Pyx_RaiseNoneNotIterableError(); + } else if (PyTuple_GET_SIZE(t) < index) { + __Pyx_RaiseNeedMoreValuesError(PyTuple_GET_SIZE(t)); + } else { + __Pyx_RaiseTooManyValuesError(index); + } +} + +static CYTHON_INLINE int __Pyx_unpack_tuple2(PyObject* tuple, PyObject** pvalue1, PyObject** pvalue2, + int is_tuple, int has_known_size, int decref_tuple) { + Py_ssize_t index; + PyObject *value1 = NULL, *value2 = NULL, *iter = NULL; + if (!is_tuple && unlikely(!PyTuple_Check(tuple))) { + iternextfunc iternext; + iter = PyObject_GetIter(tuple); + if (unlikely(!iter)) goto bad; + if (decref_tuple) { Py_DECREF(tuple); tuple = NULL; } + iternext = Py_TYPE(iter)->tp_iternext; + value1 = iternext(iter); if (unlikely(!value1)) { index = 0; goto unpacking_failed; } + value2 = iternext(iter); if (unlikely(!value2)) { index = 1; goto unpacking_failed; } + if (!has_known_size && unlikely(__Pyx_IternextUnpackEndCheck(iternext(iter), 2))) goto bad; + Py_DECREF(iter); + } else { + if (!has_known_size && unlikely(PyTuple_GET_SIZE(tuple) != 2)) { + __Pyx_UnpackTupleError(tuple, 2); + goto bad; + } +#if CYTHON_COMPILING_IN_PYPY + value1 = PySequence_ITEM(tuple, 0); + if (unlikely(!value1)) goto bad; + value2 = PySequence_ITEM(tuple, 1); + if (unlikely(!value2)) goto bad; +#else + value1 = PyTuple_GET_ITEM(tuple, 0); + value2 = PyTuple_GET_ITEM(tuple, 1); + Py_INCREF(value1); + Py_INCREF(value2); +#endif + if (decref_tuple) { Py_DECREF(tuple); } + } + *pvalue1 = value1; + *pvalue2 = value2; + return 0; +unpacking_failed: + if (!has_known_size && __Pyx_IterFinish() == 0) + __Pyx_RaiseNeedMoreValuesError(index); +bad: + Py_XDECREF(iter); + Py_XDECREF(value1); + Py_XDECREF(value2); + if (decref_tuple) { Py_XDECREF(tuple); } + return -1; +} + +static CYTHON_INLINE PyObject* __Pyx_dict_iterator(PyObject* iterable, int is_dict, PyObject* method_name, + Py_ssize_t* p_orig_length, int* p_source_is_dict) { + is_dict = is_dict || likely(PyDict_CheckExact(iterable)); + *p_source_is_dict = is_dict; +#if !CYTHON_COMPILING_IN_PYPY + if (is_dict) { + *p_orig_length = PyDict_Size(iterable); + Py_INCREF(iterable); + return iterable; + } +#endif + *p_orig_length = 0; + if (method_name) { + PyObject* iter; + iterable = __Pyx_PyObject_CallMethod0(iterable, method_name); + if (!iterable) + return NULL; +#if !CYTHON_COMPILING_IN_PYPY + if (PyTuple_CheckExact(iterable) || PyList_CheckExact(iterable)) + return iterable; +#endif + iter = PyObject_GetIter(iterable); + Py_DECREF(iterable); + return iter; + } + return PyObject_GetIter(iterable); +} +static CYTHON_INLINE int __Pyx_dict_iter_next(PyObject* iter_obj, Py_ssize_t orig_length, Py_ssize_t* ppos, + PyObject** pkey, PyObject** pvalue, PyObject** pitem, int source_is_dict) { + PyObject* next_item; +#if !CYTHON_COMPILING_IN_PYPY + if (source_is_dict) { + PyObject *key, *value; + if (unlikely(orig_length != PyDict_Size(iter_obj))) { + PyErr_SetString(PyExc_RuntimeError, "dictionary changed size during iteration"); + return -1; + } + if (unlikely(!PyDict_Next(iter_obj, ppos, &key, &value))) { + return 0; + } + if (pitem) { + PyObject* tuple = PyTuple_New(2); + if (unlikely(!tuple)) { + return -1; + } + Py_INCREF(key); + Py_INCREF(value); + PyTuple_SET_ITEM(tuple, 0, key); + PyTuple_SET_ITEM(tuple, 1, value); + *pitem = tuple; + } else { + if (pkey) { + Py_INCREF(key); + *pkey = key; + } + if (pvalue) { + Py_INCREF(value); + *pvalue = value; + } + } + return 1; + } else if (PyTuple_CheckExact(iter_obj)) { + Py_ssize_t pos = *ppos; + if (unlikely(pos >= PyTuple_GET_SIZE(iter_obj))) return 0; + *ppos = pos + 1; + next_item = PyTuple_GET_ITEM(iter_obj, pos); + Py_INCREF(next_item); + } else if (PyList_CheckExact(iter_obj)) { + Py_ssize_t pos = *ppos; + if (unlikely(pos >= PyList_GET_SIZE(iter_obj))) return 0; + *ppos = pos + 1; + next_item = PyList_GET_ITEM(iter_obj, pos); + Py_INCREF(next_item); + } else +#endif + { + next_item = PyIter_Next(iter_obj); + if (unlikely(!next_item)) { + return __Pyx_IterFinish(); + } + } + if (pitem) { + *pitem = next_item; + } else if (pkey && pvalue) { + if (__Pyx_unpack_tuple2(next_item, pkey, pvalue, source_is_dict, source_is_dict, 1)) + return -1; + } else if (pkey) { + *pkey = next_item; + } else { + *pvalue = next_item; + } + return 1; +} + +static double __Pyx__PyObject_AsDouble(PyObject* obj) { + PyObject* float_value; +#if CYTHON_COMPILING_IN_PYPY + float_value = PyNumber_Float(obj); +#else + PyNumberMethods *nb = Py_TYPE(obj)->tp_as_number; + if (likely(nb) && likely(nb->nb_float)) { + float_value = nb->nb_float(obj); + if (likely(float_value) && unlikely(!PyFloat_Check(float_value))) { + PyErr_Format(PyExc_TypeError, + "__float__ returned non-float (type %.200s)", + Py_TYPE(float_value)->tp_name); + Py_DECREF(float_value); + goto bad; + } + } else if (PyUnicode_CheckExact(obj) || PyBytes_CheckExact(obj)) { +#if PY_MAJOR_VERSION >= 3 + float_value = PyFloat_FromString(obj); +#else + float_value = PyFloat_FromString(obj, 0); +#endif + } else { + PyObject* args = PyTuple_New(1); + if (unlikely(!args)) goto bad; + PyTuple_SET_ITEM(args, 0, obj); + float_value = PyObject_Call((PyObject*)&PyFloat_Type, args, 0); + PyTuple_SET_ITEM(args, 0, 0); + Py_DECREF(args); + } +#endif + if (likely(float_value)) { + double value = PyFloat_AS_DOUBLE(float_value); + Py_DECREF(float_value); + return value; + } +bad: + return (double)-1; +} + +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { + PyObject *r; + if (!j) return NULL; + r = PyObject_GetItem(o, j); + Py_DECREF(j); + return r; +} +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, + int wraparound, int boundscheck) { +#if CYTHON_COMPILING_IN_CPYTHON + if (wraparound & unlikely(i < 0)) i += PyList_GET_SIZE(o); + if ((!boundscheck) || likely((0 <= i) & (i < PyList_GET_SIZE(o)))) { + PyObject *r = PyList_GET_ITEM(o, i); + Py_INCREF(r); + return r; + } + return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); +#else + return PySequence_GetItem(o, i); +#endif +} +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, + int wraparound, int boundscheck) { +#if CYTHON_COMPILING_IN_CPYTHON + if (wraparound & unlikely(i < 0)) i += PyTuple_GET_SIZE(o); + if ((!boundscheck) || likely((0 <= i) & (i < PyTuple_GET_SIZE(o)))) { + PyObject *r = PyTuple_GET_ITEM(o, i); + Py_INCREF(r); + return r; + } + return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); +#else + return PySequence_GetItem(o, i); +#endif +} +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, + int is_list, int wraparound, int boundscheck) { +#if CYTHON_COMPILING_IN_CPYTHON + if (is_list || PyList_CheckExact(o)) { + Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o); + if ((!boundscheck) || (likely((n >= 0) & (n < PyList_GET_SIZE(o))))) { + PyObject *r = PyList_GET_ITEM(o, n); + Py_INCREF(r); + return r; + } + } + else if (PyTuple_CheckExact(o)) { + Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o); + if ((!boundscheck) || likely((n >= 0) & (n < PyTuple_GET_SIZE(o)))) { + PyObject *r = PyTuple_GET_ITEM(o, n); + Py_INCREF(r); + return r; + } + } else { + PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence; + if (likely(m && m->sq_item)) { + if (wraparound && unlikely(i < 0) && likely(m->sq_length)) { + Py_ssize_t l = m->sq_length(o); + if (likely(l >= 0)) { + i += l; + } else { + if (PyErr_ExceptionMatches(PyExc_OverflowError)) + PyErr_Clear(); + else + return NULL; + } + } + return m->sq_item(o, i); + } + } +#else + if (is_list || PySequence_Check(o)) { + return PySequence_GetItem(o, i); + } +#endif + return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); +} + +static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb) { +#if CYTHON_COMPILING_IN_CPYTHON + PyObject *tmp_type, *tmp_value, *tmp_tb; + PyThreadState *tstate = PyThreadState_GET(); + tmp_type = tstate->curexc_type; + tmp_value = tstate->curexc_value; + tmp_tb = tstate->curexc_traceback; + tstate->curexc_type = type; + tstate->curexc_value = value; + tstate->curexc_traceback = tb; + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); +#else + PyErr_Restore(type, value, tb); +#endif +} +static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb) { +#if CYTHON_COMPILING_IN_CPYTHON + PyThreadState *tstate = PyThreadState_GET(); + *type = tstate->curexc_type; + *value = tstate->curexc_value; + *tb = tstate->curexc_traceback; + tstate->curexc_type = 0; + tstate->curexc_value = 0; + tstate->curexc_traceback = 0; +#else + PyErr_Fetch(type, value, tb); +#endif +} + +#if PY_MAJOR_VERSION < 3 +static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, + CYTHON_UNUSED PyObject *cause) { + Py_XINCREF(type); + if (!value || value == Py_None) + value = NULL; + else + Py_INCREF(value); + if (!tb || tb == Py_None) + tb = NULL; + else { + Py_INCREF(tb); + if (!PyTraceBack_Check(tb)) { + PyErr_SetString(PyExc_TypeError, + "raise: arg 3 must be a traceback or None"); + goto raise_error; + } + } + if (PyType_Check(type)) { +#if CYTHON_COMPILING_IN_PYPY + if (!value) { + Py_INCREF(Py_None); + value = Py_None; + } +#endif + PyErr_NormalizeException(&type, &value, &tb); + } else { + if (value) { + PyErr_SetString(PyExc_TypeError, + "instance exception may not have a separate value"); + goto raise_error; + } + value = type; + type = (PyObject*) Py_TYPE(type); + Py_INCREF(type); + if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) { + PyErr_SetString(PyExc_TypeError, + "raise: exception class must be a subclass of BaseException"); + goto raise_error; + } + } + __Pyx_ErrRestore(type, value, tb); + return; +raise_error: + Py_XDECREF(value); + Py_XDECREF(type); + Py_XDECREF(tb); + return; +} +#else +static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { + PyObject* owned_instance = NULL; + if (tb == Py_None) { + tb = 0; + } else if (tb && !PyTraceBack_Check(tb)) { + PyErr_SetString(PyExc_TypeError, + "raise: arg 3 must be a traceback or None"); + goto bad; + } + if (value == Py_None) + value = 0; + if (PyExceptionInstance_Check(type)) { + if (value) { + PyErr_SetString(PyExc_TypeError, + "instance exception may not have a separate value"); + goto bad; + } + value = type; + type = (PyObject*) Py_TYPE(value); + } else if (PyExceptionClass_Check(type)) { + PyObject *instance_class = NULL; + if (value && PyExceptionInstance_Check(value)) { + instance_class = (PyObject*) Py_TYPE(value); + if (instance_class != type) { + if (PyObject_IsSubclass(instance_class, type)) { + type = instance_class; + } else { + instance_class = NULL; + } + } + } + if (!instance_class) { + PyObject *args; + if (!value) + args = PyTuple_New(0); + else if (PyTuple_Check(value)) { + Py_INCREF(value); + args = value; + } else + args = PyTuple_Pack(1, value); + if (!args) + goto bad; + owned_instance = PyObject_Call(type, args, NULL); + Py_DECREF(args); + if (!owned_instance) + goto bad; + value = owned_instance; + if (!PyExceptionInstance_Check(value)) { + PyErr_Format(PyExc_TypeError, + "calling %R should have returned an instance of " + "BaseException, not %R", + type, Py_TYPE(value)); + goto bad; + } + } + } else { + PyErr_SetString(PyExc_TypeError, + "raise: exception class must be a subclass of BaseException"); + goto bad; + } +#if PY_VERSION_HEX >= 0x03030000 + if (cause) { +#else + if (cause && cause != Py_None) { +#endif + PyObject *fixed_cause; + if (cause == Py_None) { + fixed_cause = NULL; + } else if (PyExceptionClass_Check(cause)) { + fixed_cause = PyObject_CallObject(cause, NULL); + if (fixed_cause == NULL) + goto bad; + } else if (PyExceptionInstance_Check(cause)) { + fixed_cause = cause; + Py_INCREF(fixed_cause); + } else { + PyErr_SetString(PyExc_TypeError, + "exception causes must derive from " + "BaseException"); + goto bad; + } + PyException_SetCause(value, fixed_cause); + } + PyErr_SetObject(type, value); + if (tb) { +#if CYTHON_COMPILING_IN_PYPY + PyObject *tmp_type, *tmp_value, *tmp_tb; + PyErr_Fetch(tmp_type, tmp_value, tmp_tb); + Py_INCREF(tb); + PyErr_Restore(tmp_type, tmp_value, tb); + Py_XDECREF(tmp_tb); +#else + PyThreadState *tstate = PyThreadState_GET(); + PyObject* tmp_tb = tstate->curexc_traceback; + if (tb != tmp_tb) { + Py_INCREF(tb); + tstate->curexc_traceback = tb; + Py_XDECREF(tmp_tb); + } +#endif + } +bad: + Py_XDECREF(owned_instance); + return; +} +#endif + +static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { + int start = 0, mid = 0, end = count - 1; + if (end >= 0 && code_line > entries[end].code_line) { + return count; + } + while (start < end) { + mid = (start + end) / 2; + if (code_line < entries[mid].code_line) { + end = mid; + } else if (code_line > entries[mid].code_line) { + start = mid + 1; + } else { + return mid; + } + } + if (code_line <= entries[mid].code_line) { + return mid; + } else { + return mid + 1; + } +} +static PyCodeObject *__pyx_find_code_object(int code_line) { + PyCodeObject* code_object; + int pos; + if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) { + return NULL; + } + pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); + if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) { + return NULL; + } + code_object = __pyx_code_cache.entries[pos].code_object; + Py_INCREF(code_object); + return code_object; +} +static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { + int pos, i; + __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries; + if (unlikely(!code_line)) { + return; + } + if (unlikely(!entries)) { + entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry)); + if (likely(entries)) { + __pyx_code_cache.entries = entries; + __pyx_code_cache.max_count = 64; + __pyx_code_cache.count = 1; + entries[0].code_line = code_line; + entries[0].code_object = code_object; + Py_INCREF(code_object); + } + return; + } + pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); + if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) { + PyCodeObject* tmp = entries[pos].code_object; + entries[pos].code_object = code_object; + Py_DECREF(tmp); + return; + } + if (__pyx_code_cache.count == __pyx_code_cache.max_count) { + int new_max = __pyx_code_cache.max_count + 64; + entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc( + __pyx_code_cache.entries, (size_t)new_max*sizeof(__Pyx_CodeObjectCacheEntry)); + if (unlikely(!entries)) { + return; + } + __pyx_code_cache.entries = entries; + __pyx_code_cache.max_count = new_max; + } + for (i=__pyx_code_cache.count; i>pos; i--) { + entries[i] = entries[i-1]; + } + entries[pos].code_line = code_line; + entries[pos].code_object = code_object; + __pyx_code_cache.count++; + Py_INCREF(code_object); +} + +#include "compile.h" +#include "frameobject.h" +#include "traceback.h" +static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( + const char *funcname, int c_line, + int py_line, const char *filename) { + PyCodeObject *py_code = 0; + PyObject *py_srcfile = 0; + PyObject *py_funcname = 0; + #if PY_MAJOR_VERSION < 3 + py_srcfile = PyString_FromString(filename); + #else + py_srcfile = PyUnicode_FromString(filename); + #endif + if (!py_srcfile) goto bad; + if (c_line) { + #if PY_MAJOR_VERSION < 3 + py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); + #else + py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); + #endif + } + else { + #if PY_MAJOR_VERSION < 3 + py_funcname = PyString_FromString(funcname); + #else + py_funcname = PyUnicode_FromString(funcname); + #endif + } + if (!py_funcname) goto bad; + py_code = __Pyx_PyCode_New( + 0, + 0, + 0, + 0, + 0, + __pyx_empty_bytes, /*PyObject *code,*/ + __pyx_empty_tuple, /*PyObject *consts,*/ + __pyx_empty_tuple, /*PyObject *names,*/ + __pyx_empty_tuple, /*PyObject *varnames,*/ + __pyx_empty_tuple, /*PyObject *freevars,*/ + __pyx_empty_tuple, /*PyObject *cellvars,*/ + py_srcfile, /*PyObject *filename,*/ + py_funcname, /*PyObject *name,*/ + py_line, + __pyx_empty_bytes /*PyObject *lnotab*/ + ); + Py_DECREF(py_srcfile); + Py_DECREF(py_funcname); + return py_code; +bad: + Py_XDECREF(py_srcfile); + Py_XDECREF(py_funcname); + return NULL; +} +static void __Pyx_AddTraceback(const char *funcname, int c_line, + int py_line, const char *filename) { + PyCodeObject *py_code = 0; + PyFrameObject *py_frame = 0; + py_code = __pyx_find_code_object(c_line ? c_line : py_line); + if (!py_code) { + py_code = __Pyx_CreateCodeObjectForTraceback( + funcname, c_line, py_line, filename); + if (!py_code) goto bad; + __pyx_insert_code_object(c_line ? c_line : py_line, py_code); + } + py_frame = PyFrame_New( + PyThreadState_GET(), /*PyThreadState *tstate,*/ + py_code, /*PyCodeObject *code,*/ + __pyx_d, /*PyObject *globals,*/ + 0 /*PyObject *locals*/ + ); + if (!py_frame) goto bad; + py_frame->f_lineno = py_line; + PyTraceBack_Here(py_frame); +bad: + Py_XDECREF(py_code); + Py_XDECREF(py_frame); +} + +#if PY_MAJOR_VERSION < 3 +static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags) { + if (PyObject_CheckBuffer(obj)) return PyObject_GetBuffer(obj, view, flags); + if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) return __pyx_pw_5numpy_7ndarray_1__getbuffer__(obj, view, flags); + PyErr_Format(PyExc_TypeError, "'%.200s' does not have the buffer interface", Py_TYPE(obj)->tp_name); + return -1; +} +static void __Pyx_ReleaseBuffer(Py_buffer *view) { + PyObject *obj = view->obj; + if (!obj) return; + if (PyObject_CheckBuffer(obj)) { + PyBuffer_Release(view); + return; + } + if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) { __pyx_pw_5numpy_7ndarray_3__releasebuffer__(obj, view); return; } + Py_DECREF(obj); + view->obj = NULL; +} +#endif + + + static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { + PyObject *empty_list = 0; + PyObject *module = 0; + PyObject *global_dict = 0; + PyObject *empty_dict = 0; + PyObject *list; + #if PY_VERSION_HEX < 0x03030000 + PyObject *py_import; + py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); + if (!py_import) + goto bad; + #endif + if (from_list) + list = from_list; + else { + empty_list = PyList_New(0); + if (!empty_list) + goto bad; + list = empty_list; + } + global_dict = PyModule_GetDict(__pyx_m); + if (!global_dict) + goto bad; + empty_dict = PyDict_New(); + if (!empty_dict) + goto bad; + { + #if PY_MAJOR_VERSION >= 3 + if (level == -1) { + if (strchr(__Pyx_MODULE_NAME, '.')) { + #if PY_VERSION_HEX < 0x03030000 + PyObject *py_level = PyInt_FromLong(1); + if (!py_level) + goto bad; + module = PyObject_CallFunctionObjArgs(py_import, + name, global_dict, empty_dict, list, py_level, NULL); + Py_DECREF(py_level); + #else + module = PyImport_ImportModuleLevelObject( + name, global_dict, empty_dict, list, 1); + #endif + if (!module) { + if (!PyErr_ExceptionMatches(PyExc_ImportError)) + goto bad; + PyErr_Clear(); + } + } + level = 0; + } + #endif + if (!module) { + #if PY_VERSION_HEX < 0x03030000 + PyObject *py_level = PyInt_FromLong(level); + if (!py_level) + goto bad; + module = PyObject_CallFunctionObjArgs(py_import, + name, global_dict, empty_dict, list, py_level, NULL); + Py_DECREF(py_level); + #else + module = PyImport_ImportModuleLevelObject( + name, global_dict, empty_dict, list, level); + #endif + } + } +bad: + #if PY_VERSION_HEX < 0x03030000 + Py_XDECREF(py_import); + #endif + Py_XDECREF(empty_list); + Py_XDECREF(empty_dict); + return module; +} + +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { + const int neg_one = (int) -1, const_zero = 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(int) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(int) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); + } else if (sizeof(int) <= sizeof(unsigned long long)) { + return PyLong_FromUnsignedLongLong((unsigned long long) value); + } + } else { + if (sizeof(int) <= sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(int) <= sizeof(long long)) { + return PyLong_FromLongLong((long long) value); + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(int), + little, !is_unsigned); + } +} + +#define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value) \ + { \ + func_type value = func_value; \ + if (sizeof(target_type) < sizeof(func_type)) { \ + if (unlikely(value != (func_type) (target_type) value)) { \ + func_type zero = 0; \ + if (is_unsigned && unlikely(value < zero)) \ + goto raise_neg_overflow; \ + else \ + goto raise_overflow; \ + } \ + } \ + return (target_type) value; \ + } + +#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 + #if CYTHON_USE_PYLONG_INTERNALS + #include "longintrepr.h" + #endif +#endif + +static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { + const int neg_one = (int) -1, const_zero = 0; + const int is_unsigned = neg_one > const_zero; +#if PY_MAJOR_VERSION < 3 + if (likely(PyInt_Check(x))) { + if (sizeof(int) < sizeof(long)) { + __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x)) + } else { + long val = PyInt_AS_LONG(x); + if (is_unsigned && unlikely(val < 0)) { + goto raise_neg_overflow; + } + return (int) val; + } + } else +#endif + if (likely(PyLong_Check(x))) { + if (is_unsigned) { +#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 + #if CYTHON_USE_PYLONG_INTERNALS + switch (Py_SIZE(x)) { + case 0: return 0; + case 1: __PYX_VERIFY_RETURN_INT(int, digit, ((PyLongObject*)x)->ob_digit[0]); + } + #endif +#endif + if (unlikely(Py_SIZE(x) < 0)) { + goto raise_neg_overflow; + } + if (sizeof(int) <= sizeof(unsigned long)) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, PyLong_AsUnsignedLong(x)) + } else if (sizeof(int) <= sizeof(unsigned long long)) { + __PYX_VERIFY_RETURN_INT(int, unsigned long long, PyLong_AsUnsignedLongLong(x)) + } + } else { +#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 + #if CYTHON_USE_PYLONG_INTERNALS + switch (Py_SIZE(x)) { + case 0: return 0; + case 1: __PYX_VERIFY_RETURN_INT(int, digit, +(((PyLongObject*)x)->ob_digit[0])); + case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, -(sdigit) ((PyLongObject*)x)->ob_digit[0]); + } + #endif +#endif + if (sizeof(int) <= sizeof(long)) { + __PYX_VERIFY_RETURN_INT(int, long, PyLong_AsLong(x)) + } else if (sizeof(int) <= sizeof(long long)) { + __PYX_VERIFY_RETURN_INT(int, long long, PyLong_AsLongLong(x)) + } + } + { +#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) + PyErr_SetString(PyExc_RuntimeError, + "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); +#else + int val; + PyObject *v = __Pyx_PyNumber_Int(x); + #if PY_MAJOR_VERSION < 3 + if (likely(v) && !PyLong_Check(v)) { + PyObject *tmp = v; + v = PyNumber_Long(tmp); + Py_DECREF(tmp); + } + #endif + if (likely(v)) { + int one = 1; int is_little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&val; + int ret = _PyLong_AsByteArray((PyLongObject *)v, + bytes, sizeof(val), + is_little, !is_unsigned); + Py_DECREF(v); + if (likely(!ret)) + return val; + } +#endif + return (int) -1; + } + } else { + int val; + PyObject *tmp = __Pyx_PyNumber_Int(x); + if (!tmp) return (int) -1; + val = __Pyx_PyInt_As_int(tmp); + Py_DECREF(tmp); + return val; + } +raise_overflow: + PyErr_SetString(PyExc_OverflowError, + "value too large to convert to int"); + return (int) -1; +raise_neg_overflow: + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to int"); + return (int) -1; +} + +#if CYTHON_CCOMPLEX + #ifdef __cplusplus + static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { + return ::std::complex< float >(x, y); + } + #else + static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { + return x + y*(__pyx_t_float_complex)_Complex_I; + } + #endif +#else + static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { + __pyx_t_float_complex z; + z.real = x; + z.imag = y; + return z; + } +#endif + +#if CYTHON_CCOMPLEX +#else + static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex a, __pyx_t_float_complex b) { + return (a.real == b.real) && (a.imag == b.imag); + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + z.real = a.real + b.real; + z.imag = a.imag + b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + z.real = a.real - b.real; + z.imag = a.imag - b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + z.real = a.real * b.real - a.imag * b.imag; + z.imag = a.real * b.imag + a.imag * b.real; + return z; + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + float denom = b.real * b.real + b.imag * b.imag; + z.real = (a.real * b.real + a.imag * b.imag) / denom; + z.imag = (a.imag * b.real - a.real * b.imag) / denom; + return z; + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex a) { + __pyx_t_float_complex z; + z.real = -a.real; + z.imag = -a.imag; + return z; + } + static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex a) { + return (a.real == 0) && (a.imag == 0); + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex a) { + __pyx_t_float_complex z; + z.real = a.real; + z.imag = -a.imag; + return z; + } + #if 1 + static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex z) { + #if !defined(HAVE_HYPOT) || defined(_MSC_VER) + return sqrtf(z.real*z.real + z.imag*z.imag); + #else + return hypotf(z.real, z.imag); + #endif + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + float r, lnr, theta, z_r, z_theta; + if (b.imag == 0 && b.real == (int)b.real) { + if (b.real < 0) { + float denom = a.real * a.real + a.imag * a.imag; + a.real = a.real / denom; + a.imag = -a.imag / denom; + b.real = -b.real; + } + switch ((int)b.real) { + case 0: + z.real = 1; + z.imag = 0; + return z; + case 1: + return a; + case 2: + z = __Pyx_c_prodf(a, a); + return __Pyx_c_prodf(a, a); + case 3: + z = __Pyx_c_prodf(a, a); + return __Pyx_c_prodf(z, a); + case 4: + z = __Pyx_c_prodf(a, a); + return __Pyx_c_prodf(z, z); + } + } + if (a.imag == 0) { + if (a.real == 0) { + return a; + } + r = a.real; + theta = 0; + } else { + r = __Pyx_c_absf(a); + theta = atan2f(a.imag, a.real); + } + lnr = logf(r); + z_r = expf(lnr * b.real - theta * b.imag); + z_theta = theta * b.real + lnr * b.imag; + z.real = z_r * cosf(z_theta); + z.imag = z_r * sinf(z_theta); + return z; + } + #endif +#endif + +#if CYTHON_CCOMPLEX + #ifdef __cplusplus + static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { + return ::std::complex< double >(x, y); + } + #else + static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { + return x + y*(__pyx_t_double_complex)_Complex_I; + } + #endif +#else + static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { + __pyx_t_double_complex z; + z.real = x; + z.imag = y; + return z; + } +#endif + +#if CYTHON_CCOMPLEX +#else + static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex a, __pyx_t_double_complex b) { + return (a.real == b.real) && (a.imag == b.imag); + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + z.real = a.real + b.real; + z.imag = a.imag + b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + z.real = a.real - b.real; + z.imag = a.imag - b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + z.real = a.real * b.real - a.imag * b.imag; + z.imag = a.real * b.imag + a.imag * b.real; + return z; + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + double denom = b.real * b.real + b.imag * b.imag; + z.real = (a.real * b.real + a.imag * b.imag) / denom; + z.imag = (a.imag * b.real - a.real * b.imag) / denom; + return z; + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex a) { + __pyx_t_double_complex z; + z.real = -a.real; + z.imag = -a.imag; + return z; + } + static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex a) { + return (a.real == 0) && (a.imag == 0); + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex a) { + __pyx_t_double_complex z; + z.real = a.real; + z.imag = -a.imag; + return z; + } + #if 1 + static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex z) { + #if !defined(HAVE_HYPOT) || defined(_MSC_VER) + return sqrt(z.real*z.real + z.imag*z.imag); + #else + return hypot(z.real, z.imag); + #endif + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + double r, lnr, theta, z_r, z_theta; + if (b.imag == 0 && b.real == (int)b.real) { + if (b.real < 0) { + double denom = a.real * a.real + a.imag * a.imag; + a.real = a.real / denom; + a.imag = -a.imag / denom; + b.real = -b.real; + } + switch ((int)b.real) { + case 0: + z.real = 1; + z.imag = 0; + return z; + case 1: + return a; + case 2: + z = __Pyx_c_prod(a, a); + return __Pyx_c_prod(a, a); + case 3: + z = __Pyx_c_prod(a, a); + return __Pyx_c_prod(z, a); + case 4: + z = __Pyx_c_prod(a, a); + return __Pyx_c_prod(z, z); + } + } + if (a.imag == 0) { + if (a.real == 0) { + return a; + } + r = a.real; + theta = 0; + } else { + r = __Pyx_c_abs(a); + theta = atan2(a.imag, a.real); + } + lnr = log(r); + z_r = exp(lnr * b.real - theta * b.imag); + z_theta = theta * b.real + lnr * b.imag; + z.real = z_r * cos(z_theta); + z.imag = z_r * sin(z_theta); + return z; + } + #endif +#endif + +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { + const long neg_one = (long) -1, const_zero = 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(long) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(long) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); + } else if (sizeof(long) <= sizeof(unsigned long long)) { + return PyLong_FromUnsignedLongLong((unsigned long long) value); + } + } else { + if (sizeof(long) <= sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(long) <= sizeof(long long)) { + return PyLong_FromLongLong((long long) value); + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(long), + little, !is_unsigned); + } +} + +static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { + const long neg_one = (long) -1, const_zero = 0; + const int is_unsigned = neg_one > const_zero; +#if PY_MAJOR_VERSION < 3 + if (likely(PyInt_Check(x))) { + if (sizeof(long) < sizeof(long)) { + __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x)) + } else { + long val = PyInt_AS_LONG(x); + if (is_unsigned && unlikely(val < 0)) { + goto raise_neg_overflow; + } + return (long) val; + } + } else +#endif + if (likely(PyLong_Check(x))) { + if (is_unsigned) { +#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 + #if CYTHON_USE_PYLONG_INTERNALS + switch (Py_SIZE(x)) { + case 0: return 0; + case 1: __PYX_VERIFY_RETURN_INT(long, digit, ((PyLongObject*)x)->ob_digit[0]); + } + #endif +#endif + if (unlikely(Py_SIZE(x) < 0)) { + goto raise_neg_overflow; + } + if (sizeof(long) <= sizeof(unsigned long)) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, PyLong_AsUnsignedLong(x)) + } else if (sizeof(long) <= sizeof(unsigned long long)) { + __PYX_VERIFY_RETURN_INT(long, unsigned long long, PyLong_AsUnsignedLongLong(x)) + } + } else { +#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 + #if CYTHON_USE_PYLONG_INTERNALS + switch (Py_SIZE(x)) { + case 0: return 0; + case 1: __PYX_VERIFY_RETURN_INT(long, digit, +(((PyLongObject*)x)->ob_digit[0])); + case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, -(sdigit) ((PyLongObject*)x)->ob_digit[0]); + } + #endif +#endif + if (sizeof(long) <= sizeof(long)) { + __PYX_VERIFY_RETURN_INT(long, long, PyLong_AsLong(x)) + } else if (sizeof(long) <= sizeof(long long)) { + __PYX_VERIFY_RETURN_INT(long, long long, PyLong_AsLongLong(x)) + } + } + { +#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) + PyErr_SetString(PyExc_RuntimeError, + "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); +#else + long val; + PyObject *v = __Pyx_PyNumber_Int(x); + #if PY_MAJOR_VERSION < 3 + if (likely(v) && !PyLong_Check(v)) { + PyObject *tmp = v; + v = PyNumber_Long(tmp); + Py_DECREF(tmp); + } + #endif + if (likely(v)) { + int one = 1; int is_little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&val; + int ret = _PyLong_AsByteArray((PyLongObject *)v, + bytes, sizeof(val), + is_little, !is_unsigned); + Py_DECREF(v); + if (likely(!ret)) + return val; + } +#endif + return (long) -1; + } + } else { + long val; + PyObject *tmp = __Pyx_PyNumber_Int(x); + if (!tmp) return (long) -1; + val = __Pyx_PyInt_As_long(tmp); + Py_DECREF(tmp); + return val; + } +raise_overflow: + PyErr_SetString(PyExc_OverflowError, + "value too large to convert to long"); + return (long) -1; +raise_neg_overflow: + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to long"); + return (long) -1; +} + +static int __Pyx_check_binary_version(void) { + char ctversion[4], rtversion[4]; + PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); + PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); + if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) { + char message[200]; + PyOS_snprintf(message, sizeof(message), + "compiletime version %s of module '%.100s' " + "does not match runtime version %s", + ctversion, __Pyx_MODULE_NAME, rtversion); + return PyErr_WarnEx(NULL, message, 1); + } + return 0; +} + +#ifndef __PYX_HAVE_RT_ImportModule +#define __PYX_HAVE_RT_ImportModule +static PyObject *__Pyx_ImportModule(const char *name) { + PyObject *py_name = 0; + PyObject *py_module = 0; + py_name = __Pyx_PyIdentifier_FromString(name); + if (!py_name) + goto bad; + py_module = PyImport_Import(py_name); + Py_DECREF(py_name); + return py_module; +bad: + Py_XDECREF(py_name); + return 0; +} +#endif + +#ifndef __PYX_HAVE_RT_ImportType +#define __PYX_HAVE_RT_ImportType +static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, + size_t size, int strict) +{ + PyObject *py_module = 0; + PyObject *result = 0; + PyObject *py_name = 0; + char warning[200]; + Py_ssize_t basicsize; +#ifdef Py_LIMITED_API + PyObject *py_basicsize; +#endif + py_module = __Pyx_ImportModule(module_name); + if (!py_module) + goto bad; + py_name = __Pyx_PyIdentifier_FromString(class_name); + if (!py_name) + goto bad; + result = PyObject_GetAttr(py_module, py_name); + Py_DECREF(py_name); + py_name = 0; + Py_DECREF(py_module); + py_module = 0; + if (!result) + goto bad; + if (!PyType_Check(result)) { + PyErr_Format(PyExc_TypeError, + "%.200s.%.200s is not a type object", + module_name, class_name); + goto bad; + } +#ifndef Py_LIMITED_API + basicsize = ((PyTypeObject *)result)->tp_basicsize; +#else + py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); + if (!py_basicsize) + goto bad; + basicsize = PyLong_AsSsize_t(py_basicsize); + Py_DECREF(py_basicsize); + py_basicsize = 0; + if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) + goto bad; +#endif + if (!strict && (size_t)basicsize > size) { + PyOS_snprintf(warning, sizeof(warning), + "%s.%s size changed, may indicate binary incompatibility", + module_name, class_name); + if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad; + } + else if ((size_t)basicsize != size) { + PyErr_Format(PyExc_ValueError, + "%.200s.%.200s has the wrong size, try recompiling", + module_name, class_name); + goto bad; + } + return (PyTypeObject *)result; +bad: + Py_XDECREF(py_module); + Py_XDECREF(result); + return NULL; +} +#endif + +static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { + while (t->p) { + #if PY_MAJOR_VERSION < 3 + if (t->is_unicode) { + *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL); + } else if (t->intern) { + *t->p = PyString_InternFromString(t->s); + } else { + *t->p = PyString_FromStringAndSize(t->s, t->n - 1); + } + #else + if (t->is_unicode | t->is_str) { + if (t->intern) { + *t->p = PyUnicode_InternFromString(t->s); + } else if (t->encoding) { + *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL); + } else { + *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1); + } + } else { + *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1); + } + #endif + if (!*t->p) + return -1; + ++t; + } + return 0; +} + +static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { + return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str)); +} +static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) { + Py_ssize_t ignore; + return __Pyx_PyObject_AsStringAndSize(o, &ignore); +} +static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { +#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT + if ( +#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII + __Pyx_sys_getdefaultencoding_not_ascii && +#endif + PyUnicode_Check(o)) { +#if PY_VERSION_HEX < 0x03030000 + char* defenc_c; + PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL); + if (!defenc) return NULL; + defenc_c = PyBytes_AS_STRING(defenc); +#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII + { + char* end = defenc_c + PyBytes_GET_SIZE(defenc); + char* c; + for (c = defenc_c; c < end; c++) { + if ((unsigned char) (*c) >= 128) { + PyUnicode_AsASCIIString(o); + return NULL; + } + } + } +#endif + *length = PyBytes_GET_SIZE(defenc); + return defenc_c; +#else + if (__Pyx_PyUnicode_READY(o) == -1) return NULL; +#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII + if (PyUnicode_IS_ASCII(o)) { + *length = PyUnicode_GET_LENGTH(o); + return PyUnicode_AsUTF8(o); + } else { + PyUnicode_AsASCIIString(o); + return NULL; + } +#else + return PyUnicode_AsUTF8AndSize(o, length); +#endif +#endif + } else +#endif +#if !CYTHON_COMPILING_IN_PYPY + if (PyByteArray_Check(o)) { + *length = PyByteArray_GET_SIZE(o); + return PyByteArray_AS_STRING(o); + } else +#endif + { + char* result; + int r = PyBytes_AsStringAndSize(o, &result, length); + if (unlikely(r < 0)) { + return NULL; + } else { + return result; + } + } +} +static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { + int is_true = x == Py_True; + if (is_true | (x == Py_False) | (x == Py_None)) return is_true; + else return PyObject_IsTrue(x); +} +static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x) { + PyNumberMethods *m; + const char *name = NULL; + PyObject *res = NULL; +#if PY_MAJOR_VERSION < 3 + if (PyInt_Check(x) || PyLong_Check(x)) +#else + if (PyLong_Check(x)) +#endif + return Py_INCREF(x), x; + m = Py_TYPE(x)->tp_as_number; +#if PY_MAJOR_VERSION < 3 + if (m && m->nb_int) { + name = "int"; + res = PyNumber_Int(x); + } + else if (m && m->nb_long) { + name = "long"; + res = PyNumber_Long(x); + } +#else + if (m && m->nb_int) { + name = "int"; + res = PyNumber_Long(x); + } +#endif + if (res) { +#if PY_MAJOR_VERSION < 3 + if (!PyInt_Check(res) && !PyLong_Check(res)) { +#else + if (!PyLong_Check(res)) { +#endif + PyErr_Format(PyExc_TypeError, + "__%.4s__ returned non-%.4s (type %.200s)", + name, name, Py_TYPE(res)->tp_name); + Py_DECREF(res); + return NULL; + } + } + else if (!PyErr_Occurred()) { + PyErr_SetString(PyExc_TypeError, + "an integer is required"); + } + return res; +} +static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { + Py_ssize_t ival; + PyObject *x; +#if PY_MAJOR_VERSION < 3 + if (likely(PyInt_CheckExact(b))) + return PyInt_AS_LONG(b); +#endif + if (likely(PyLong_CheckExact(b))) { + #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 + #if CYTHON_USE_PYLONG_INTERNALS + switch (Py_SIZE(b)) { + case -1: return -(sdigit)((PyLongObject*)b)->ob_digit[0]; + case 0: return 0; + case 1: return ((PyLongObject*)b)->ob_digit[0]; + } + #endif + #endif + return PyLong_AsSsize_t(b); + } + x = PyNumber_Index(b); + if (!x) return -1; + ival = PyInt_AsSsize_t(x); + Py_DECREF(x); + return ival; +} +static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { + return PyInt_FromSize_t(ival); +} + + +#endif /* Py_PYTHON_H */ |
