diff options
Diffstat (limited to 'experiments/ml3.c')
| -rw-r--r-- | experiments/ml3.c | 7774 |
1 files changed, 0 insertions, 7774 deletions
diff --git a/experiments/ml3.c b/experiments/ml3.c deleted file mode 100644 index 7ad3edb..0000000 --- a/experiments/ml3.c +++ /dev/null @@ -1,7774 +0,0 @@ -/* Generated by Cython 0.22 */ - -/* BEGIN: Cython Metadata -{ - "distutils": { - "depends": [] - } -} -END: Cython Metadata */ - -#define PY_SSIZE_T_CLEAN -#ifndef CYTHON_USE_PYLONG_INTERNALS -#ifdef PYLONG_BITS_IN_DIGIT -#define CYTHON_USE_PYLONG_INTERNALS 0 -#else -#include "pyconfig.h" -#ifdef PYLONG_BITS_IN_DIGIT -#define CYTHON_USE_PYLONG_INTERNALS 1 -#else -#define CYTHON_USE_PYLONG_INTERNALS 0 -#endif -#endif -#endif -#include "Python.h" -#ifndef Py_PYTHON_H - #error Python headers needed to compile C extensions, please install development version of Python. -#elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03020000) - #error Cython requires Python 2.6+ or Python 3.2+. -#else -#define CYTHON_ABI "0_22" -#include <stddef.h> -#ifndef offsetof -#define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) -#endif -#if !defined(WIN32) && !defined(MS_WINDOWS) - #ifndef __stdcall - #define __stdcall - #endif - #ifndef __cdecl - #define __cdecl - #endif - #ifndef __fastcall - #define __fastcall - #endif -#endif -#ifndef DL_IMPORT - #define DL_IMPORT(t) t -#endif -#ifndef DL_EXPORT - #define DL_EXPORT(t) t -#endif -#ifndef PY_LONG_LONG - #define PY_LONG_LONG LONG_LONG -#endif -#ifndef Py_HUGE_VAL - #define Py_HUGE_VAL HUGE_VAL -#endif -#ifdef PYPY_VERSION -#define CYTHON_COMPILING_IN_PYPY 1 -#define CYTHON_COMPILING_IN_CPYTHON 0 -#else -#define CYTHON_COMPILING_IN_PYPY 0 -#define CYTHON_COMPILING_IN_CPYTHON 1 -#endif -#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 && !defined(Py_OptimizeFlag) -#define Py_OptimizeFlag 0 -#endif -#define __PYX_BUILD_PY_SSIZE_T "n" -#define CYTHON_FORMAT_SSIZE_T "z" -#if PY_MAJOR_VERSION < 3 - #define __Pyx_BUILTIN_MODULE_NAME "__builtin__" - #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \ - PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) - #define __Pyx_DefaultClassType PyClass_Type -#else - #define __Pyx_BUILTIN_MODULE_NAME "builtins" - #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \ - PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) - #define __Pyx_DefaultClassType PyType_Type -#endif -#if PY_MAJOR_VERSION >= 3 - #define Py_TPFLAGS_CHECKTYPES 0 - #define Py_TPFLAGS_HAVE_INDEX 0 - #define Py_TPFLAGS_HAVE_NEWBUFFER 0 -#endif -#if PY_VERSION_HEX < 0x030400a1 && !defined(Py_TPFLAGS_HAVE_FINALIZE) - #define Py_TPFLAGS_HAVE_FINALIZE 0 -#endif -#if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND) - #define CYTHON_PEP393_ENABLED 1 - #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ? \ - 0 : _PyUnicode_Ready((PyObject *)(op))) - #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u) - #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i) - #define __Pyx_PyUnicode_KIND(u) PyUnicode_KIND(u) - #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u) - #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i) -#else - #define CYTHON_PEP393_ENABLED 0 - #define __Pyx_PyUnicode_READY(op) (0) - #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u) - #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i])) - #define __Pyx_PyUnicode_KIND(u) (sizeof(Py_UNICODE)) - #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u)) - #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i])) -#endif -#if CYTHON_COMPILING_IN_PYPY - #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b) - #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b) - #define __Pyx_PyFrozenSet_Size(s) PyObject_Size(s) -#else - #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b) - #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ? \ - PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b)) - #define __Pyx_PyFrozenSet_Size(s) PySet_Size(s) -#endif -#define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b)) -#define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b)) -#if PY_MAJOR_VERSION >= 3 - #define __Pyx_PyString_Format(a, b) PyUnicode_Format(a, b) -#else - #define __Pyx_PyString_Format(a, b) PyString_Format(a, b) -#endif -#if PY_MAJOR_VERSION >= 3 - #define PyBaseString_Type PyUnicode_Type - #define PyStringObject PyUnicodeObject - #define PyString_Type PyUnicode_Type - #define PyString_Check PyUnicode_Check - #define PyString_CheckExact PyUnicode_CheckExact -#endif -#if PY_MAJOR_VERSION >= 3 - #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj) - #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj) -#else - #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj)) - #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj)) -#endif -#ifndef PySet_CheckExact - #define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type) -#endif -#define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type) -#if PY_MAJOR_VERSION >= 3 - #define PyIntObject PyLongObject - #define PyInt_Type PyLong_Type - #define PyInt_Check(op) PyLong_Check(op) - #define PyInt_CheckExact(op) PyLong_CheckExact(op) - #define PyInt_FromString PyLong_FromString - #define PyInt_FromUnicode PyLong_FromUnicode - #define PyInt_FromLong PyLong_FromLong - #define PyInt_FromSize_t PyLong_FromSize_t - #define PyInt_FromSsize_t PyLong_FromSsize_t - #define PyInt_AsLong PyLong_AsLong - #define PyInt_AS_LONG PyLong_AS_LONG - #define PyInt_AsSsize_t PyLong_AsSsize_t - #define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask - #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask - #define PyNumber_Int PyNumber_Long -#endif -#if PY_MAJOR_VERSION >= 3 - #define PyBoolObject PyLongObject -#endif -#if PY_MAJOR_VERSION >= 3 && CYTHON_COMPILING_IN_PYPY - #ifndef PyUnicode_InternFromString - #define PyUnicode_InternFromString(s) PyUnicode_FromString(s) - #endif -#endif -#if PY_VERSION_HEX < 0x030200A4 - typedef long Py_hash_t; - #define __Pyx_PyInt_FromHash_t PyInt_FromLong - #define __Pyx_PyInt_AsHash_t PyInt_AsLong -#else - #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t - #define __Pyx_PyInt_AsHash_t PyInt_AsSsize_t -#endif -#if PY_MAJOR_VERSION >= 3 - #define __Pyx_PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : PyInstanceMethod_New(func)) -#else - #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass) -#endif -#ifndef CYTHON_INLINE - #if defined(__GNUC__) - #define CYTHON_INLINE __inline__ - #elif defined(_MSC_VER) - #define CYTHON_INLINE __inline - #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L - #define CYTHON_INLINE inline - #else - #define CYTHON_INLINE - #endif -#endif -#ifndef CYTHON_RESTRICT - #if defined(__GNUC__) - #define CYTHON_RESTRICT __restrict__ - #elif defined(_MSC_VER) && _MSC_VER >= 1400 - #define CYTHON_RESTRICT __restrict - #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L - #define CYTHON_RESTRICT restrict - #else - #define CYTHON_RESTRICT - #endif -#endif -#ifdef NAN -#define __PYX_NAN() ((float) NAN) -#else -static CYTHON_INLINE float __PYX_NAN() { - /* Initialize NaN. The sign is irrelevant, an exponent with all bits 1 and - a nonzero mantissa means NaN. If the first bit in the mantissa is 1, it is - a quiet NaN. */ - float value; - memset(&value, 0xFF, sizeof(value)); - return value; -} -#endif -#define __Pyx_void_to_None(void_result) (void_result, Py_INCREF(Py_None), Py_None) -#ifdef __cplusplus -template<typename T> -void __Pyx_call_destructor(T* x) { - x->~T(); -} -template<typename T> -class __Pyx_FakeReference { - public: - __Pyx_FakeReference() : ptr(NULL) { } - __Pyx_FakeReference(T& ref) : ptr(&ref) { } - T *operator->() { return ptr; } - operator T&() { return *ptr; } - private: - T *ptr; -}; -#endif - - -#if PY_MAJOR_VERSION >= 3 - #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) - #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) -#else - #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y) - #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y) -#endif - -#ifndef __PYX_EXTERN_C - #ifdef __cplusplus - #define __PYX_EXTERN_C extern "C" - #else - #define __PYX_EXTERN_C extern - #endif -#endif - -#if defined(WIN32) || defined(MS_WINDOWS) -#define _USE_MATH_DEFINES -#endif -#include <math.h> -#define __PYX_HAVE__ml3 -#define __PYX_HAVE_API__ml3 -#include "string.h" -#include "stdio.h" -#include "stdlib.h" -#include "numpy/arrayobject.h" -#include "numpy/ufuncobject.h" -#include "math.h" -#ifdef _OPENMP -#include <omp.h> -#endif /* _OPENMP */ - -#ifdef PYREX_WITHOUT_ASSERTIONS -#define CYTHON_WITHOUT_ASSERTIONS -#endif - -#ifndef CYTHON_UNUSED -# if defined(__GNUC__) -# if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) -# define CYTHON_UNUSED __attribute__ ((__unused__)) -# else -# define CYTHON_UNUSED -# endif -# elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) -# define CYTHON_UNUSED __attribute__ ((__unused__)) -# else -# define CYTHON_UNUSED -# endif -#endif -typedef struct {PyObject **p; char *s; const Py_ssize_t n; const char* encoding; - const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; - -#define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0 -#define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT 0 -#define __PYX_DEFAULT_STRING_ENCODING "" -#define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString -#define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize -#define __Pyx_fits_Py_ssize_t(v, type, is_signed) ( \ - (sizeof(type) < sizeof(Py_ssize_t)) || \ - (sizeof(type) > sizeof(Py_ssize_t) && \ - likely(v < (type)PY_SSIZE_T_MAX || \ - v == (type)PY_SSIZE_T_MAX) && \ - (!is_signed || likely(v > (type)PY_SSIZE_T_MIN || \ - v == (type)PY_SSIZE_T_MIN))) || \ - (sizeof(type) == sizeof(Py_ssize_t) && \ - (is_signed || likely(v < (type)PY_SSIZE_T_MAX || \ - v == (type)PY_SSIZE_T_MAX))) ) -static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject*); -static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); -#define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s)) -#define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) -#define __Pyx_PyBytes_FromString PyBytes_FromString -#define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize -static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); -#if PY_MAJOR_VERSION < 3 - #define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString - #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize -#else - #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString - #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize -#endif -#define __Pyx_PyObject_AsSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_AsUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s) -#define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s) -#define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s) -#define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s) -#define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s) -#if PY_MAJOR_VERSION < 3 -static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) -{ - const Py_UNICODE *u_end = u; - while (*u_end++) ; - return (size_t)(u_end - u - 1); -} -#else -#define __Pyx_Py_UNICODE_strlen Py_UNICODE_strlen -#endif -#define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u)) -#define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode -#define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode -#define __Pyx_Owned_Py_None(b) (Py_INCREF(Py_None), Py_None) -#define __Pyx_PyBool_FromLong(b) ((b) ? (Py_INCREF(Py_True), Py_True) : (Py_INCREF(Py_False), Py_False)) -static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*); -static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x); -static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*); -static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t); -#if CYTHON_COMPILING_IN_CPYTHON -#define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x)) -#else -#define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x) -#endif -#define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x)) -#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII -static int __Pyx_sys_getdefaultencoding_not_ascii; -static int __Pyx_init_sys_getdefaultencoding_params(void) { - PyObject* sys; - PyObject* default_encoding = NULL; - PyObject* ascii_chars_u = NULL; - PyObject* ascii_chars_b = NULL; - const char* default_encoding_c; - sys = PyImport_ImportModule("sys"); - if (!sys) goto bad; - default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL); - Py_DECREF(sys); - if (!default_encoding) goto bad; - default_encoding_c = PyBytes_AsString(default_encoding); - if (!default_encoding_c) goto bad; - if (strcmp(default_encoding_c, "ascii") == 0) { - __Pyx_sys_getdefaultencoding_not_ascii = 0; - } else { - char ascii_chars[128]; - int c; - for (c = 0; c < 128; c++) { - ascii_chars[c] = c; - } - __Pyx_sys_getdefaultencoding_not_ascii = 1; - ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL); - if (!ascii_chars_u) goto bad; - ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL); - if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) { - PyErr_Format( - PyExc_ValueError, - "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.", - default_encoding_c); - goto bad; - } - Py_DECREF(ascii_chars_u); - Py_DECREF(ascii_chars_b); - } - Py_DECREF(default_encoding); - return 0; -bad: - Py_XDECREF(default_encoding); - Py_XDECREF(ascii_chars_u); - Py_XDECREF(ascii_chars_b); - return -1; -} -#endif -#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3 -#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL) -#else -#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL) -#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT -static char* __PYX_DEFAULT_STRING_ENCODING; -static int __Pyx_init_sys_getdefaultencoding_params(void) { - PyObject* sys; - PyObject* default_encoding = NULL; - char* default_encoding_c; - sys = PyImport_ImportModule("sys"); - if (!sys) goto bad; - default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); - Py_DECREF(sys); - if (!default_encoding) goto bad; - default_encoding_c = PyBytes_AsString(default_encoding); - if (!default_encoding_c) goto bad; - __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c)); - if (!__PYX_DEFAULT_STRING_ENCODING) goto bad; - strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c); - Py_DECREF(default_encoding); - return 0; -bad: - Py_XDECREF(default_encoding); - return -1; -} -#endif -#endif - - -/* Test for GCC > 2.95 */ -#if defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95))) - #define likely(x) __builtin_expect(!!(x), 1) - #define unlikely(x) __builtin_expect(!!(x), 0) -#else /* !__GNUC__ or GCC < 2.95 */ - #define likely(x) (x) - #define unlikely(x) (x) -#endif /* __GNUC__ */ - -static PyObject *__pyx_m; -static PyObject *__pyx_d; -static PyObject *__pyx_b; -static PyObject *__pyx_empty_tuple; -static PyObject *__pyx_empty_bytes; -static int __pyx_lineno; -static int __pyx_clineno = 0; -static const char * __pyx_cfilenm= __FILE__; -static const char *__pyx_filename; - -#if !defined(CYTHON_CCOMPLEX) - #if defined(__cplusplus) - #define CYTHON_CCOMPLEX 1 - #elif defined(_Complex_I) - #define CYTHON_CCOMPLEX 1 - #else - #define CYTHON_CCOMPLEX 0 - #endif -#endif -#if CYTHON_CCOMPLEX - #ifdef __cplusplus - #include <complex> - #else - #include <complex.h> - #endif -#endif -#if CYTHON_CCOMPLEX && !defined(__cplusplus) && defined(__sun__) && defined(__GNUC__) - #undef _Complex_I - #define _Complex_I 1.0fj -#endif - - -static const char *__pyx_f[] = { - "ml3.pyx", - "__init__.pxd", - "type.pxd", -}; -#define IS_UNSIGNED(type) (((type) -1) > 0) -struct __Pyx_StructField_; -#define __PYX_BUF_FLAGS_PACKED_STRUCT (1 << 0) -typedef struct { - const char* name; - struct __Pyx_StructField_* fields; - size_t size; - size_t arraysize[8]; - int ndim; - char typegroup; - char is_unsigned; - int flags; -} __Pyx_TypeInfo; -typedef struct __Pyx_StructField_ { - __Pyx_TypeInfo* type; - const char* name; - size_t offset; -} __Pyx_StructField; -typedef struct { - __Pyx_StructField* field; - size_t parent_offset; -} __Pyx_BufFmt_StackElem; -typedef struct { - __Pyx_StructField root; - __Pyx_BufFmt_StackElem* head; - size_t fmt_offset; - size_t new_count, enc_count; - size_t struct_alignment; - int is_complex; - char enc_type; - char new_packmode; - char enc_packmode; - char is_valid_array; -} __Pyx_BufFmt_Context; - - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":726 - * # in Cython to enable them only on the right systems. - * - * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<< - * ctypedef npy_int16 int16_t - * ctypedef npy_int32 int32_t - */ -typedef npy_int8 __pyx_t_5numpy_int8_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":727 - * - * ctypedef npy_int8 int8_t - * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<< - * ctypedef npy_int32 int32_t - * ctypedef npy_int64 int64_t - */ -typedef npy_int16 __pyx_t_5numpy_int16_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":728 - * ctypedef npy_int8 int8_t - * ctypedef npy_int16 int16_t - * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<< - * ctypedef npy_int64 int64_t - * #ctypedef npy_int96 int96_t - */ -typedef npy_int32 __pyx_t_5numpy_int32_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":729 - * ctypedef npy_int16 int16_t - * ctypedef npy_int32 int32_t - * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<< - * #ctypedef npy_int96 int96_t - * #ctypedef npy_int128 int128_t - */ -typedef npy_int64 __pyx_t_5numpy_int64_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":733 - * #ctypedef npy_int128 int128_t - * - * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<< - * ctypedef npy_uint16 uint16_t - * ctypedef npy_uint32 uint32_t - */ -typedef npy_uint8 __pyx_t_5numpy_uint8_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":734 - * - * ctypedef npy_uint8 uint8_t - * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<< - * ctypedef npy_uint32 uint32_t - * ctypedef npy_uint64 uint64_t - */ -typedef npy_uint16 __pyx_t_5numpy_uint16_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":735 - * ctypedef npy_uint8 uint8_t - * ctypedef npy_uint16 uint16_t - * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<< - * ctypedef npy_uint64 uint64_t - * #ctypedef npy_uint96 uint96_t - */ -typedef npy_uint32 __pyx_t_5numpy_uint32_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":736 - * ctypedef npy_uint16 uint16_t - * ctypedef npy_uint32 uint32_t - * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<< - * #ctypedef npy_uint96 uint96_t - * #ctypedef npy_uint128 uint128_t - */ -typedef npy_uint64 __pyx_t_5numpy_uint64_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":740 - * #ctypedef npy_uint128 uint128_t - * - * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<< - * ctypedef npy_float64 float64_t - * #ctypedef npy_float80 float80_t - */ -typedef npy_float32 __pyx_t_5numpy_float32_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":741 - * - * ctypedef npy_float32 float32_t - * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<< - * #ctypedef npy_float80 float80_t - * #ctypedef npy_float128 float128_t - */ -typedef npy_float64 __pyx_t_5numpy_float64_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":750 - * # The int types are mapped a bit surprising -- - * # numpy.int corresponds to 'l' and numpy.long to 'q' - * ctypedef npy_long int_t # <<<<<<<<<<<<<< - * ctypedef npy_longlong long_t - * ctypedef npy_longlong longlong_t - */ -typedef npy_long __pyx_t_5numpy_int_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":751 - * # numpy.int corresponds to 'l' and numpy.long to 'q' - * ctypedef npy_long int_t - * ctypedef npy_longlong long_t # <<<<<<<<<<<<<< - * ctypedef npy_longlong longlong_t - * - */ -typedef npy_longlong __pyx_t_5numpy_long_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":752 - * ctypedef npy_long int_t - * ctypedef npy_longlong long_t - * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<< - * - * ctypedef npy_ulong uint_t - */ -typedef npy_longlong __pyx_t_5numpy_longlong_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":754 - * ctypedef npy_longlong longlong_t - * - * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<< - * ctypedef npy_ulonglong ulong_t - * ctypedef npy_ulonglong ulonglong_t - */ -typedef npy_ulong __pyx_t_5numpy_uint_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":755 - * - * ctypedef npy_ulong uint_t - * ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<< - * ctypedef npy_ulonglong ulonglong_t - * - */ -typedef npy_ulonglong __pyx_t_5numpy_ulong_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":756 - * ctypedef npy_ulong uint_t - * ctypedef npy_ulonglong ulong_t - * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<< - * - * ctypedef npy_intp intp_t - */ -typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":758 - * ctypedef npy_ulonglong ulonglong_t - * - * ctypedef npy_intp intp_t # <<<<<<<<<<<<<< - * ctypedef npy_uintp uintp_t - * - */ -typedef npy_intp __pyx_t_5numpy_intp_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":759 - * - * ctypedef npy_intp intp_t - * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<< - * - * ctypedef npy_double float_t - */ -typedef npy_uintp __pyx_t_5numpy_uintp_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":761 - * ctypedef npy_uintp uintp_t - * - * ctypedef npy_double float_t # <<<<<<<<<<<<<< - * ctypedef npy_double double_t - * ctypedef npy_longdouble longdouble_t - */ -typedef npy_double __pyx_t_5numpy_float_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":762 - * - * ctypedef npy_double float_t - * ctypedef npy_double double_t # <<<<<<<<<<<<<< - * ctypedef npy_longdouble longdouble_t - * - */ -typedef npy_double __pyx_t_5numpy_double_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":763 - * ctypedef npy_double float_t - * ctypedef npy_double double_t - * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<< - * - * ctypedef npy_cfloat cfloat_t - */ -typedef npy_longdouble __pyx_t_5numpy_longdouble_t; - -/* "ml3.pyx":7 - * - * DTYPE = np.float64 - * ctypedef np.float_t DTYPE_t # <<<<<<<<<<<<<< - * - * cdef DTYPE_t weight_success(int dist, int dt, DTYPE_t alpha, DTYPE_t delta, - */ -typedef __pyx_t_5numpy_float_t __pyx_t_3ml3_DTYPE_t; -#if CYTHON_CCOMPLEX - #ifdef __cplusplus - typedef ::std::complex< float > __pyx_t_float_complex; - #else - typedef float _Complex __pyx_t_float_complex; - #endif -#else - typedef struct { float real, imag; } __pyx_t_float_complex; -#endif - -#if CYTHON_CCOMPLEX - #ifdef __cplusplus - typedef ::std::complex< double > __pyx_t_double_complex; - #else - typedef double _Complex __pyx_t_double_complex; - #endif -#else - typedef struct { double real, imag; } __pyx_t_double_complex; -#endif - - -/*--- Type declarations ---*/ - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":765 - * ctypedef npy_longdouble longdouble_t - * - * ctypedef npy_cfloat cfloat_t # <<<<<<<<<<<<<< - * ctypedef npy_cdouble cdouble_t - * ctypedef npy_clongdouble clongdouble_t - */ -typedef npy_cfloat __pyx_t_5numpy_cfloat_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":766 - * - * ctypedef npy_cfloat cfloat_t - * ctypedef npy_cdouble cdouble_t # <<<<<<<<<<<<<< - * ctypedef npy_clongdouble clongdouble_t - * - */ -typedef npy_cdouble __pyx_t_5numpy_cdouble_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":767 - * ctypedef npy_cfloat cfloat_t - * ctypedef npy_cdouble cdouble_t - * ctypedef npy_clongdouble clongdouble_t # <<<<<<<<<<<<<< - * - * ctypedef npy_cdouble complex_t - */ -typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t; - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":769 - * ctypedef npy_clongdouble clongdouble_t - * - * ctypedef npy_cdouble complex_t # <<<<<<<<<<<<<< - * - * cdef inline object PyArray_MultiIterNew1(a): - */ -typedef npy_cdouble __pyx_t_5numpy_complex_t; - -/* --- Runtime support code (head) --- */ -#ifndef CYTHON_REFNANNY - #define CYTHON_REFNANNY 0 -#endif -#if CYTHON_REFNANNY - typedef struct { - void (*INCREF)(void*, PyObject*, int); - void (*DECREF)(void*, PyObject*, int); - void (*GOTREF)(void*, PyObject*, int); - void (*GIVEREF)(void*, PyObject*, int); - void* (*SetupContext)(const char*, int, const char*); - void (*FinishContext)(void**); - } __Pyx_RefNannyAPIStruct; - static __Pyx_RefNannyAPIStruct *__Pyx_RefNanny = NULL; - static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname); - #define __Pyx_RefNannyDeclarations void *__pyx_refnanny = NULL; -#ifdef WITH_THREAD - #define __Pyx_RefNannySetupContext(name, acquire_gil) \ - if (acquire_gil) { \ - PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure(); \ - __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__); \ - PyGILState_Release(__pyx_gilstate_save); \ - } else { \ - __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__); \ - } -#else - #define __Pyx_RefNannySetupContext(name, acquire_gil) \ - __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__) -#endif - #define __Pyx_RefNannyFinishContext() \ - __Pyx_RefNanny->FinishContext(&__pyx_refnanny) - #define __Pyx_INCREF(r) __Pyx_RefNanny->INCREF(__pyx_refnanny, (PyObject *)(r), __LINE__) - #define __Pyx_DECREF(r) __Pyx_RefNanny->DECREF(__pyx_refnanny, (PyObject *)(r), __LINE__) - #define __Pyx_GOTREF(r) __Pyx_RefNanny->GOTREF(__pyx_refnanny, (PyObject *)(r), __LINE__) - #define __Pyx_GIVEREF(r) __Pyx_RefNanny->GIVEREF(__pyx_refnanny, (PyObject *)(r), __LINE__) - #define __Pyx_XINCREF(r) do { if((r) != NULL) {__Pyx_INCREF(r); }} while(0) - #define __Pyx_XDECREF(r) do { if((r) != NULL) {__Pyx_DECREF(r); }} while(0) - #define __Pyx_XGOTREF(r) do { if((r) != NULL) {__Pyx_GOTREF(r); }} while(0) - #define __Pyx_XGIVEREF(r) do { if((r) != NULL) {__Pyx_GIVEREF(r);}} while(0) -#else - #define __Pyx_RefNannyDeclarations - #define __Pyx_RefNannySetupContext(name, acquire_gil) - #define __Pyx_RefNannyFinishContext() - #define __Pyx_INCREF(r) Py_INCREF(r) - #define __Pyx_DECREF(r) Py_DECREF(r) - #define __Pyx_GOTREF(r) - #define __Pyx_GIVEREF(r) - #define __Pyx_XINCREF(r) Py_XINCREF(r) - #define __Pyx_XDECREF(r) Py_XDECREF(r) - #define __Pyx_XGOTREF(r) - #define __Pyx_XGIVEREF(r) -#endif -#define __Pyx_XDECREF_SET(r, v) do { \ - PyObject *tmp = (PyObject *) r; \ - r = v; __Pyx_XDECREF(tmp); \ - } while (0) -#define __Pyx_DECREF_SET(r, v) do { \ - PyObject *tmp = (PyObject *) r; \ - r = v; __Pyx_DECREF(tmp); \ - } while (0) -#define __Pyx_CLEAR(r) do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0) -#define __Pyx_XCLEAR(r) do { if((r) != NULL) {PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);}} while(0) - -#if CYTHON_COMPILING_IN_CPYTHON -static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) { - PyTypeObject* tp = Py_TYPE(obj); - if (likely(tp->tp_getattro)) - return tp->tp_getattro(obj, attr_name); -#if PY_MAJOR_VERSION < 3 - if (likely(tp->tp_getattr)) - return tp->tp_getattr(obj, PyString_AS_STRING(attr_name)); -#endif - return PyObject_GetAttr(obj, attr_name); -} -#else -#define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n) -#endif - -static PyObject *__Pyx_GetBuiltinName(PyObject *name); - -static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact, - Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); - -static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name); - -static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[], \ - PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, \ - const char* function_name); - -static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, - const char *name, int exact); - -static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name); - -#if CYTHON_COMPILING_IN_CPYTHON -static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw); -#else -#define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw) -#endif - -static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); - -static CYTHON_INLINE int __Pyx_GetBufferAndValidate(Py_buffer* buf, PyObject* obj, - __Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack); -static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info); - -static CYTHON_INLINE int __Pyx_IterFinish(void); - -#if CYTHON_COMPILING_IN_CPYTHON -static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg); -#endif - -#if CYTHON_COMPILING_IN_CPYTHON -static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func); -#else -#define __Pyx_PyObject_CallNoArg(func) __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL) -#endif - -static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg); - -static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name); - -static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index); - -static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); - -static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected); - -static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void); - -static void __Pyx_UnpackTupleError(PyObject *, Py_ssize_t index); - -static CYTHON_INLINE int __Pyx_unpack_tuple2(PyObject* tuple, PyObject** value1, PyObject** value2, - int is_tuple, int has_known_size, int decref_tuple); - -static CYTHON_INLINE PyObject* __Pyx_dict_iterator(PyObject* dict, int is_dict, PyObject* method_name, - Py_ssize_t* p_orig_length, int* p_is_dict); -static CYTHON_INLINE int __Pyx_dict_iter_next(PyObject* dict_or_iter, Py_ssize_t orig_length, Py_ssize_t* ppos, - PyObject** pkey, PyObject** pvalue, PyObject** pitem, int is_dict); - -#if CYTHON_COMPILING_IN_CPYTHON -static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) { - PyListObject* L = (PyListObject*) list; - Py_ssize_t len = Py_SIZE(list); - if (likely(L->allocated > len)) { - Py_INCREF(x); - PyList_SET_ITEM(list, len, x); - Py_SIZE(list) = len+1; - return 0; - } - return PyList_Append(list, x); -} -#else -#define __Pyx_ListComp_Append(L,x) PyList_Append(L,x) -#endif - -#define __Pyx_BufPtrStrided1d(type, buf, i0, s0) (type)((char*)buf + i0 * s0) -static double __Pyx__PyObject_AsDouble(PyObject* obj); -#if CYTHON_COMPILING_IN_PYPY -#define __Pyx_PyObject_AsDouble(obj) \ -(likely(PyFloat_CheckExact(obj)) ? PyFloat_AS_DOUBLE(obj) : \ - likely(PyInt_CheckExact(obj)) ? \ - PyFloat_AsDouble(obj) : __Pyx__PyObject_AsDouble(obj)) -#else -#define __Pyx_PyObject_AsDouble(obj) \ -((likely(PyFloat_CheckExact(obj))) ? \ - PyFloat_AS_DOUBLE(obj) : __Pyx__PyObject_AsDouble(obj)) -#endif - -#define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \ - (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \ - __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) : \ - (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) : \ - __Pyx_GetItemInt_Generic(o, to_py_func(i)))) -#define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \ - (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \ - __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) : \ - (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL)) -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, - int wraparound, int boundscheck); -#define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \ - (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \ - __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) : \ - (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL)) -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, - int wraparound, int boundscheck); -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j); -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, - int is_list, int wraparound, int boundscheck); - -static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb); -static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb); - -static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); - -#if PY_MAJOR_VERSION >= 3 -static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) { - PyObject *value; - value = PyDict_GetItemWithError(d, key); - if (unlikely(!value)) { - if (!PyErr_Occurred()) { - PyObject* args = PyTuple_Pack(1, key); - if (likely(args)) - PyErr_SetObject(PyExc_KeyError, args); - Py_XDECREF(args); - } - return NULL; - } - Py_INCREF(value); - return value; -} -#else - #define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key) -#endif - -typedef struct { - int code_line; - PyCodeObject* code_object; -} __Pyx_CodeObjectCacheEntry; -struct __Pyx_CodeObjectCache { - int count; - int max_count; - __Pyx_CodeObjectCacheEntry* entries; -}; -static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL}; -static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line); -static PyCodeObject *__pyx_find_code_object(int code_line); -static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object); - -static void __Pyx_AddTraceback(const char *funcname, int c_line, - int py_line, const char *filename); - -typedef struct { - Py_ssize_t shape, strides, suboffsets; -} __Pyx_Buf_DimInfo; -typedef struct { - size_t refcount; - Py_buffer pybuffer; -} __Pyx_Buffer; -typedef struct { - __Pyx_Buffer *rcbuffer; - char *data; - __Pyx_Buf_DimInfo diminfo[8]; -} __Pyx_LocalBuf_ND; - -#if PY_MAJOR_VERSION < 3 - static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags); - static void __Pyx_ReleaseBuffer(Py_buffer *view); -#else - #define __Pyx_GetBuffer PyObject_GetBuffer - #define __Pyx_ReleaseBuffer PyBuffer_Release -#endif - - -static Py_ssize_t __Pyx_zeros[] = {0, 0, 0, 0, 0, 0, 0, 0}; -static Py_ssize_t __Pyx_minusones[] = {-1, -1, -1, -1, -1, -1, -1, -1}; - -static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); - -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value); - -static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); - -#if CYTHON_CCOMPLEX - #ifdef __cplusplus - #define __Pyx_CREAL(z) ((z).real()) - #define __Pyx_CIMAG(z) ((z).imag()) - #else - #define __Pyx_CREAL(z) (__real__(z)) - #define __Pyx_CIMAG(z) (__imag__(z)) - #endif -#else - #define __Pyx_CREAL(z) ((z).real) - #define __Pyx_CIMAG(z) ((z).imag) -#endif -#if (defined(_WIN32) || defined(__clang__)) && defined(__cplusplus) && CYTHON_CCOMPLEX - #define __Pyx_SET_CREAL(z,x) ((z).real(x)) - #define __Pyx_SET_CIMAG(z,y) ((z).imag(y)) -#else - #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x) - #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y) -#endif - -static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float, float); - -#if CYTHON_CCOMPLEX - #define __Pyx_c_eqf(a, b) ((a)==(b)) - #define __Pyx_c_sumf(a, b) ((a)+(b)) - #define __Pyx_c_difff(a, b) ((a)-(b)) - #define __Pyx_c_prodf(a, b) ((a)*(b)) - #define __Pyx_c_quotf(a, b) ((a)/(b)) - #define __Pyx_c_negf(a) (-(a)) - #ifdef __cplusplus - #define __Pyx_c_is_zerof(z) ((z)==(float)0) - #define __Pyx_c_conjf(z) (::std::conj(z)) - #if 1 - #define __Pyx_c_absf(z) (::std::abs(z)) - #define __Pyx_c_powf(a, b) (::std::pow(a, b)) - #endif - #else - #define __Pyx_c_is_zerof(z) ((z)==0) - #define __Pyx_c_conjf(z) (conjf(z)) - #if 1 - #define __Pyx_c_absf(z) (cabsf(z)) - #define __Pyx_c_powf(a, b) (cpowf(a, b)) - #endif - #endif -#else - static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex, __pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex, __pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex, __pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex, __pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex, __pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex); - static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex); - #if 1 - static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex, __pyx_t_float_complex); - #endif -#endif - -static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double, double); - -#if CYTHON_CCOMPLEX - #define __Pyx_c_eq(a, b) ((a)==(b)) - #define __Pyx_c_sum(a, b) ((a)+(b)) - #define __Pyx_c_diff(a, b) ((a)-(b)) - #define __Pyx_c_prod(a, b) ((a)*(b)) - #define __Pyx_c_quot(a, b) ((a)/(b)) - #define __Pyx_c_neg(a) (-(a)) - #ifdef __cplusplus - #define __Pyx_c_is_zero(z) ((z)==(double)0) - #define __Pyx_c_conj(z) (::std::conj(z)) - #if 1 - #define __Pyx_c_abs(z) (::std::abs(z)) - #define __Pyx_c_pow(a, b) (::std::pow(a, b)) - #endif - #else - #define __Pyx_c_is_zero(z) ((z)==0) - #define __Pyx_c_conj(z) (conj(z)) - #if 1 - #define __Pyx_c_abs(z) (cabs(z)) - #define __Pyx_c_pow(a, b) (cpow(a, b)) - #endif - #endif -#else - static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex, __pyx_t_double_complex); - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex, __pyx_t_double_complex); - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex, __pyx_t_double_complex); - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex, __pyx_t_double_complex); - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex, __pyx_t_double_complex); - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex); - static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex); - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex); - #if 1 - static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex); - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex, __pyx_t_double_complex); - #endif -#endif - -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); - -static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); - -static int __Pyx_check_binary_version(void); - -#if !defined(__Pyx_PyIdentifier_FromString) -#if PY_MAJOR_VERSION < 3 - #define __Pyx_PyIdentifier_FromString(s) PyString_FromString(s) -#else - #define __Pyx_PyIdentifier_FromString(s) PyUnicode_FromString(s) -#endif -#endif - -static PyObject *__Pyx_ImportModule(const char *name); - -static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict); - -static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); - - -/* Module declarations from 'cpython.buffer' */ - -/* Module declarations from 'cpython.ref' */ - -/* Module declarations from 'libc.string' */ - -/* Module declarations from 'libc.stdio' */ - -/* Module declarations from 'cpython.object' */ - -/* Module declarations from '__builtin__' */ - -/* Module declarations from 'cpython.type' */ -static PyTypeObject *__pyx_ptype_7cpython_4type_type = 0; - -/* Module declarations from 'libc.stdlib' */ - -/* Module declarations from 'numpy' */ - -/* Module declarations from 'numpy' */ -static PyTypeObject *__pyx_ptype_5numpy_dtype = 0; -static PyTypeObject *__pyx_ptype_5numpy_flatiter = 0; -static PyTypeObject *__pyx_ptype_5numpy_broadcast = 0; -static PyTypeObject *__pyx_ptype_5numpy_ndarray = 0; -static PyTypeObject *__pyx_ptype_5numpy_ufunc = 0; -static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, char *, char *, int *); /*proto*/ - -/* Module declarations from 'libc.math' */ - -/* Module declarations from 'ml3' */ -static __pyx_t_3ml3_DTYPE_t __pyx_f_3ml3_weight_success(int, int, __pyx_t_3ml3_DTYPE_t, __pyx_t_3ml3_DTYPE_t, __pyx_t_3ml3_DTYPE_t, __pyx_t_3ml3_DTYPE_t, __pyx_t_3ml3_DTYPE_t); /*proto*/ -static __pyx_t_3ml3_DTYPE_t __pyx_f_3ml3_weight_failure(int, int, __pyx_t_3ml3_DTYPE_t, __pyx_t_3ml3_DTYPE_t, __pyx_t_3ml3_DTYPE_t, __pyx_t_3ml3_DTYPE_t, __pyx_t_3ml3_DTYPE_t); /*proto*/ -static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3ml3_DTYPE_t = { "DTYPE_t", NULL, sizeof(__pyx_t_3ml3_DTYPE_t), { 0 }, 0, 'R', 0, 0 }; -#define __Pyx_MODULE_NAME "ml3" -int __pyx_module_is_main_ml3 = 0; - -/* Implementation of 'ml3' */ -static PyObject *__pyx_builtin_enumerate; -static PyObject *__pyx_builtin_sum; -static PyObject *__pyx_builtin_ValueError; -static PyObject *__pyx_builtin_range; -static PyObject *__pyx_builtin_RuntimeError; -static PyObject *__pyx_pf_3ml3_ml3(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_root_victims, PyObject *__pyx_v_victims, CYTHON_UNUSED PyObject *__pyx_v_non_victims, CYTHON_UNUSED __pyx_t_3ml3_DTYPE_t __pyx_v_age, __pyx_t_3ml3_DTYPE_t __pyx_v_alpha, __pyx_t_3ml3_DTYPE_t __pyx_v_delta); /* proto */ -static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ -static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ -static char __pyx_k_B[] = "B"; -static char __pyx_k_H[] = "H"; -static char __pyx_k_I[] = "I"; -static char __pyx_k_L[] = "L"; -static char __pyx_k_O[] = "O"; -static char __pyx_k_Q[] = "Q"; -static char __pyx_k_b[] = "b"; -static char __pyx_k_d[] = "d"; -static char __pyx_k_f[] = "f"; -static char __pyx_k_g[] = "g"; -static char __pyx_k_h[] = "h"; -static char __pyx_k_i[] = "i"; -static char __pyx_k_l[] = "l"; -static char __pyx_k_q[] = "q"; -static char __pyx_k_s[] = "s"; -static char __pyx_k_t[] = "t"; -static char __pyx_k_Zd[] = "Zd"; -static char __pyx_k_Zf[] = "Zf"; -static char __pyx_k_Zg[] = "Zg"; -static char __pyx_k_dt[] = "dt"; -static char __pyx_k_ll[] = "ll"; -static char __pyx_k_np[] = "np"; -static char __pyx_k_w1[] = "w1"; -static char __pyx_k_w2[] = "w2"; -static char __pyx_k_w3[] = "w3"; -static char __pyx_k_age[] = "age"; -static char __pyx_k_dts[] = "dts"; -static char __pyx_k_inf[] = "-inf"; -static char __pyx_k_ml3[] = "ml3"; -static char __pyx_k_sum[] = "sum"; -static char __pyx_k_beta[] = "beta"; -static char __pyx_k_dist[] = "dist"; -static char __pyx_k_main[] = "__main__"; -static char __pyx_k_prnt[] = "prnt"; -static char __pyx_k_prob[] = "prob"; -static char __pyx_k_test[] = "__test__"; -static char __pyx_k_DTYPE[] = "DTYPE"; -static char __pyx_k_alpha[] = "alpha"; -static char __pyx_k_delta[] = "delta"; -static char __pyx_k_dists[] = "dists"; -static char __pyx_k_dtype[] = "dtype"; -static char __pyx_k_numpy[] = "numpy"; -static char __pyx_k_probs[] = "probs"; -static char __pyx_k_range[] = "range"; -static char __pyx_k_roots[] = "roots"; -static char __pyx_k_seeds[] = "seeds"; -static char __pyx_k_zeros[] = "zeros"; -static char __pyx_k_arange[] = "arange"; -static char __pyx_k_import[] = "__import__"; -static char __pyx_k_thresh[] = "thresh"; -static char __pyx_k_float64[] = "float64"; -static char __pyx_k_n_roots[] = "n_roots"; -static char __pyx_k_parents[] = "parents"; -static char __pyx_k_victims[] = "victims"; -static char __pyx_k_beta_add[] = "beta_add"; -static char __pyx_k_failures[] = "failures"; -static char __pyx_k_max_beta[] = "max_beta"; -static char __pyx_k_enumerate[] = "enumerate"; -static char __pyx_k_max_roots[] = "max_roots"; -static char __pyx_k_n_victims[] = "n_victims"; -static char __pyx_k_non_seeds[] = "non_seeds"; -static char __pyx_k_successes[] = "successes"; -static char __pyx_k_ValueError[] = "ValueError"; -static char __pyx_k_itervalues[] = "itervalues"; -static char __pyx_k_parent_dts[] = "parent_dts"; -static char __pyx_k_probs_fail[] = "probs_fail"; -static char __pyx_k_non_victims[] = "non_victims"; -static char __pyx_k_RuntimeError[] = "RuntimeError"; -static char __pyx_k_max_beta_add[] = "max_beta_add"; -static char __pyx_k_parent_dists[] = "parent_dists"; -static char __pyx_k_root_victims[] = "root_victims"; -static char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous"; -static char __pyx_k_Users_ben_Documents_Cascade_Pro[] = "/Users/ben/Documents/Cascade Project/criminal_cascades/experiments/ml3.pyx"; -static char __pyx_k_unknown_dtype_code_in_numpy_pxd[] = "unknown dtype code in numpy.pxd (%d)"; -static char __pyx_k_Format_string_allocated_too_shor[] = "Format string allocated too short, see comment in numpy.pxd"; -static char __pyx_k_Non_native_byte_order_not_suppor[] = "Non-native byte order not supported"; -static char __pyx_k_ndarray_is_not_Fortran_contiguou[] = "ndarray is not Fortran contiguous"; -static char __pyx_k_Format_string_allocated_too_shor_2[] = "Format string allocated too short."; -static PyObject *__pyx_n_s_DTYPE; -static PyObject *__pyx_kp_u_Format_string_allocated_too_shor; -static PyObject *__pyx_kp_u_Format_string_allocated_too_shor_2; -static PyObject *__pyx_kp_u_Non_native_byte_order_not_suppor; -static PyObject *__pyx_n_s_RuntimeError; -static PyObject *__pyx_kp_s_Users_ben_Documents_Cascade_Pro; -static PyObject *__pyx_n_s_ValueError; -static PyObject *__pyx_n_s_age; -static PyObject *__pyx_n_s_alpha; -static PyObject *__pyx_n_s_arange; -static PyObject *__pyx_n_s_beta; -static PyObject *__pyx_n_s_beta_add; -static PyObject *__pyx_n_s_delta; -static PyObject *__pyx_n_s_dist; -static PyObject *__pyx_n_s_dists; -static PyObject *__pyx_n_s_dt; -static PyObject *__pyx_n_s_dts; -static PyObject *__pyx_n_s_dtype; -static PyObject *__pyx_n_s_enumerate; -static PyObject *__pyx_n_s_failures; -static PyObject *__pyx_n_s_float64; -static PyObject *__pyx_n_s_i; -static PyObject *__pyx_n_s_import; -static PyObject *__pyx_kp_s_inf; -static PyObject *__pyx_n_s_itervalues; -static PyObject *__pyx_n_s_l; -static PyObject *__pyx_n_s_ll; -static PyObject *__pyx_n_s_main; -static PyObject *__pyx_n_s_max_beta; -static PyObject *__pyx_n_s_max_beta_add; -static PyObject *__pyx_n_s_max_roots; -static PyObject *__pyx_n_s_ml3; -static PyObject *__pyx_n_s_n_roots; -static PyObject *__pyx_n_s_n_victims; -static PyObject *__pyx_kp_u_ndarray_is_not_C_contiguous; -static PyObject *__pyx_kp_u_ndarray_is_not_Fortran_contiguou; -static PyObject *__pyx_n_s_non_seeds; -static PyObject *__pyx_n_s_non_victims; -static PyObject *__pyx_n_s_np; -static PyObject *__pyx_n_s_numpy; -static PyObject *__pyx_n_s_parent_dists; -static PyObject *__pyx_n_s_parent_dts; -static PyObject *__pyx_n_s_parents; -static PyObject *__pyx_n_s_prnt; -static PyObject *__pyx_n_s_prob; -static PyObject *__pyx_n_s_probs; -static PyObject *__pyx_n_s_probs_fail; -static PyObject *__pyx_n_s_range; -static PyObject *__pyx_n_s_root_victims; -static PyObject *__pyx_n_s_roots; -static PyObject *__pyx_n_s_s; -static PyObject *__pyx_n_s_seeds; -static PyObject *__pyx_n_s_successes; -static PyObject *__pyx_n_s_sum; -static PyObject *__pyx_n_s_t; -static PyObject *__pyx_n_s_test; -static PyObject *__pyx_n_s_thresh; -static PyObject *__pyx_kp_u_unknown_dtype_code_in_numpy_pxd; -static PyObject *__pyx_n_s_victims; -static PyObject *__pyx_n_s_w1; -static PyObject *__pyx_n_s_w2; -static PyObject *__pyx_n_s_w3; -static PyObject *__pyx_n_s_zeros; -static PyObject *__pyx_float__01; -static PyObject *__pyx_float_0_01; -static PyObject *__pyx_int_1; -static PyObject *__pyx_tuple_; -static PyObject *__pyx_tuple__2; -static PyObject *__pyx_tuple__3; -static PyObject *__pyx_tuple__4; -static PyObject *__pyx_tuple__5; -static PyObject *__pyx_tuple__6; -static PyObject *__pyx_tuple__7; -static PyObject *__pyx_tuple__8; -static PyObject *__pyx_codeobj__9; - -/* "ml3.pyx":9 - * ctypedef np.float_t DTYPE_t - * - * cdef DTYPE_t weight_success(int dist, int dt, DTYPE_t alpha, DTYPE_t delta, # <<<<<<<<<<<<<< - * DTYPE_t w1, DTYPE_t w2, DTYPE_t w3): - * """weight for successful infection, exponential time model""" - */ - -static __pyx_t_3ml3_DTYPE_t __pyx_f_3ml3_weight_success(int __pyx_v_dist, int __pyx_v_dt, __pyx_t_3ml3_DTYPE_t __pyx_v_alpha, __pyx_t_3ml3_DTYPE_t __pyx_v_delta, CYTHON_UNUSED __pyx_t_3ml3_DTYPE_t __pyx_v_w1, CYTHON_UNUSED __pyx_t_3ml3_DTYPE_t __pyx_v_w2, CYTHON_UNUSED __pyx_t_3ml3_DTYPE_t __pyx_v_w3) { - __pyx_t_3ml3_DTYPE_t __pyx_v_structural; - __pyx_t_3ml3_DTYPE_t __pyx_v_temporal; - __pyx_t_3ml3_DTYPE_t __pyx_v_result; - __pyx_t_3ml3_DTYPE_t __pyx_r; - __Pyx_RefNannyDeclarations - __Pyx_RefNannySetupContext("weight_success", 0); - - /* "ml3.pyx":13 - * """weight for successful infection, exponential time model""" - * cdef DTYPE_t structural, temporal, result - * structural = delta ** dist # <<<<<<<<<<<<<< - * temporal = log(exp(alpha)-1.) - alpha*dt - * result = log(structural) + temporal - */ - __pyx_v_structural = pow(__pyx_v_delta, ((__pyx_t_3ml3_DTYPE_t)__pyx_v_dist)); - - /* "ml3.pyx":14 - * cdef DTYPE_t structural, temporal, result - * structural = delta ** dist - * temporal = log(exp(alpha)-1.) - alpha*dt # <<<<<<<<<<<<<< - * result = log(structural) + temporal - * return result - */ - __pyx_v_temporal = (log((exp(__pyx_v_alpha) - 1.)) - (__pyx_v_alpha * __pyx_v_dt)); - - /* "ml3.pyx":15 - * structural = delta ** dist - * temporal = log(exp(alpha)-1.) - alpha*dt - * result = log(structural) + temporal # <<<<<<<<<<<<<< - * return result - * - */ - __pyx_v_result = (log(__pyx_v_structural) + __pyx_v_temporal); - - /* "ml3.pyx":16 - * temporal = log(exp(alpha)-1.) - alpha*dt - * result = log(structural) + temporal - * return result # <<<<<<<<<<<<<< - * - * cdef DTYPE_t weight_failure(int dist, int dt, DTYPE_t alpha, DTYPE_t delta, - */ - __pyx_r = __pyx_v_result; - goto __pyx_L0; - - /* "ml3.pyx":9 - * ctypedef np.float_t DTYPE_t - * - * cdef DTYPE_t weight_success(int dist, int dt, DTYPE_t alpha, DTYPE_t delta, # <<<<<<<<<<<<<< - * DTYPE_t w1, DTYPE_t w2, DTYPE_t w3): - * """weight for successful infection, exponential time model""" - */ - - /* function exit code */ - __pyx_L0:; - __Pyx_RefNannyFinishContext(); - return __pyx_r; -} - -/* "ml3.pyx":18 - * return result - * - * cdef DTYPE_t weight_failure(int dist, int dt, DTYPE_t alpha, DTYPE_t delta, # <<<<<<<<<<<<<< - * DTYPE_t w1, DTYPE_t w2, DTYPE_t w3): - * """weight for failed infection, exponential time model""" - */ - -static __pyx_t_3ml3_DTYPE_t __pyx_f_3ml3_weight_failure(int __pyx_v_dist, int __pyx_v_dt, __pyx_t_3ml3_DTYPE_t __pyx_v_alpha, __pyx_t_3ml3_DTYPE_t __pyx_v_delta, CYTHON_UNUSED __pyx_t_3ml3_DTYPE_t __pyx_v_w1, CYTHON_UNUSED __pyx_t_3ml3_DTYPE_t __pyx_v_w2, CYTHON_UNUSED __pyx_t_3ml3_DTYPE_t __pyx_v_w3) { - __pyx_t_3ml3_DTYPE_t __pyx_v_structural; - __pyx_t_3ml3_DTYPE_t __pyx_v_temporal; - __pyx_t_3ml3_DTYPE_t __pyx_v_result; - __pyx_t_3ml3_DTYPE_t __pyx_r; - __Pyx_RefNannyDeclarations - __Pyx_RefNannySetupContext("weight_failure", 0); - - /* "ml3.pyx":22 - * """weight for failed infection, exponential time model""" - * cdef DTYPE_t structural, temporal, result - * structural = delta ** dist # <<<<<<<<<<<<<< - * temporal = exp(-alpha * dt) - * result = log(1. - structural + structural * temporal) - */ - __pyx_v_structural = pow(__pyx_v_delta, ((__pyx_t_3ml3_DTYPE_t)__pyx_v_dist)); - - /* "ml3.pyx":23 - * cdef DTYPE_t structural, temporal, result - * structural = delta ** dist - * temporal = exp(-alpha * dt) # <<<<<<<<<<<<<< - * result = log(1. - structural + structural * temporal) - * return result - */ - __pyx_v_temporal = exp(((-__pyx_v_alpha) * __pyx_v_dt)); - - /* "ml3.pyx":24 - * structural = delta ** dist - * temporal = exp(-alpha * dt) - * result = log(1. - structural + structural * temporal) # <<<<<<<<<<<<<< - * return result - * - */ - __pyx_v_result = log(((1. - __pyx_v_structural) + (__pyx_v_structural * __pyx_v_temporal))); - - /* "ml3.pyx":25 - * temporal = exp(-alpha * dt) - * result = log(1. - structural + structural * temporal) - * return result # <<<<<<<<<<<<<< - * - * def ml3(dict root_victims, dict victims, dict non_victims, DTYPE_t age, - */ - __pyx_r = __pyx_v_result; - goto __pyx_L0; - - /* "ml3.pyx":18 - * return result - * - * cdef DTYPE_t weight_failure(int dist, int dt, DTYPE_t alpha, DTYPE_t delta, # <<<<<<<<<<<<<< - * DTYPE_t w1, DTYPE_t w2, DTYPE_t w3): - * """weight for failed infection, exponential time model""" - */ - - /* function exit code */ - __pyx_L0:; - __Pyx_RefNannyFinishContext(); - return __pyx_r; -} - -/* "ml3.pyx":27 - * return result - * - * def ml3(dict root_victims, dict victims, dict non_victims, DTYPE_t age, # <<<<<<<<<<<<<< - * DTYPE_t alpha, DTYPE_t delta): - * cdef: - */ - -/* Python wrapper */ -static PyObject *__pyx_pw_3ml3_1ml3(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ -static PyMethodDef __pyx_mdef_3ml3_1ml3 = {"ml3", (PyCFunction)__pyx_pw_3ml3_1ml3, METH_VARARGS|METH_KEYWORDS, 0}; -static PyObject *__pyx_pw_3ml3_1ml3(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) { - PyObject *__pyx_v_root_victims = 0; - PyObject *__pyx_v_victims = 0; - CYTHON_UNUSED PyObject *__pyx_v_non_victims = 0; - CYTHON_UNUSED __pyx_t_3ml3_DTYPE_t __pyx_v_age; - __pyx_t_3ml3_DTYPE_t __pyx_v_alpha; - __pyx_t_3ml3_DTYPE_t __pyx_v_delta; - int __pyx_lineno = 0; - const char *__pyx_filename = NULL; - int __pyx_clineno = 0; - PyObject *__pyx_r = 0; - __Pyx_RefNannyDeclarations - __Pyx_RefNannySetupContext("ml3 (wrapper)", 0); - { - static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_root_victims,&__pyx_n_s_victims,&__pyx_n_s_non_victims,&__pyx_n_s_age,&__pyx_n_s_alpha,&__pyx_n_s_delta,0}; - PyObject* values[6] = {0,0,0,0,0,0}; - if (unlikely(__pyx_kwds)) { - Py_ssize_t kw_args; - const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args); - switch (pos_args) { - case 6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5); - case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4); - case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3); - case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2); - case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); - case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); - case 0: break; - default: goto __pyx_L5_argtuple_error; - } - kw_args = PyDict_Size(__pyx_kwds); - switch (pos_args) { - case 0: - if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_root_victims)) != 0)) kw_args--; - else goto __pyx_L5_argtuple_error; - case 1: - if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_victims)) != 0)) kw_args--; - else { - __Pyx_RaiseArgtupleInvalid("ml3", 1, 6, 6, 1); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L3_error;} - } - case 2: - if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_non_victims)) != 0)) kw_args--; - else { - __Pyx_RaiseArgtupleInvalid("ml3", 1, 6, 6, 2); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L3_error;} - } - case 3: - if (likely((values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_age)) != 0)) kw_args--; - else { - __Pyx_RaiseArgtupleInvalid("ml3", 1, 6, 6, 3); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L3_error;} - } - case 4: - if (likely((values[4] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_alpha)) != 0)) kw_args--; - else { - __Pyx_RaiseArgtupleInvalid("ml3", 1, 6, 6, 4); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L3_error;} - } - case 5: - if (likely((values[5] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_delta)) != 0)) kw_args--; - else { - __Pyx_RaiseArgtupleInvalid("ml3", 1, 6, 6, 5); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L3_error;} - } - } - if (unlikely(kw_args > 0)) { - if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "ml3") < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L3_error;} - } - } else if (PyTuple_GET_SIZE(__pyx_args) != 6) { - goto __pyx_L5_argtuple_error; - } else { - values[0] = PyTuple_GET_ITEM(__pyx_args, 0); - values[1] = PyTuple_GET_ITEM(__pyx_args, 1); - values[2] = PyTuple_GET_ITEM(__pyx_args, 2); - values[3] = PyTuple_GET_ITEM(__pyx_args, 3); - values[4] = PyTuple_GET_ITEM(__pyx_args, 4); - values[5] = PyTuple_GET_ITEM(__pyx_args, 5); - } - __pyx_v_root_victims = ((PyObject*)values[0]); - __pyx_v_victims = ((PyObject*)values[1]); - __pyx_v_non_victims = ((PyObject*)values[2]); - __pyx_v_age = __pyx_PyFloat_AsDouble(values[3]); if (unlikely((__pyx_v_age == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L3_error;} - __pyx_v_alpha = __pyx_PyFloat_AsDouble(values[4]); if (unlikely((__pyx_v_alpha == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 28; __pyx_clineno = __LINE__; goto __pyx_L3_error;} - __pyx_v_delta = __pyx_PyFloat_AsDouble(values[5]); if (unlikely((__pyx_v_delta == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 28; __pyx_clineno = __LINE__; goto __pyx_L3_error;} - } - goto __pyx_L4_argument_unpacking_done; - __pyx_L5_argtuple_error:; - __Pyx_RaiseArgtupleInvalid("ml3", 1, 6, 6, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L3_error;} - __pyx_L3_error:; - __Pyx_AddTraceback("ml3.ml3", __pyx_clineno, __pyx_lineno, __pyx_filename); - __Pyx_RefNannyFinishContext(); - return NULL; - __pyx_L4_argument_unpacking_done:; - if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_root_victims), (&PyDict_Type), 1, "root_victims", 1))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_victims), (&PyDict_Type), 1, "victims", 1))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_non_victims), (&PyDict_Type), 1, "non_victims", 1))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_r = __pyx_pf_3ml3_ml3(__pyx_self, __pyx_v_root_victims, __pyx_v_victims, __pyx_v_non_victims, __pyx_v_age, __pyx_v_alpha, __pyx_v_delta); - - /* function exit code */ - goto __pyx_L0; - __pyx_L1_error:; - __pyx_r = NULL; - __pyx_L0:; - __Pyx_RefNannyFinishContext(); - return __pyx_r; -} - -static PyObject *__pyx_pf_3ml3_ml3(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_root_victims, PyObject *__pyx_v_victims, CYTHON_UNUSED PyObject *__pyx_v_non_victims, CYTHON_UNUSED __pyx_t_3ml3_DTYPE_t __pyx_v_age, __pyx_t_3ml3_DTYPE_t __pyx_v_alpha, __pyx_t_3ml3_DTYPE_t __pyx_v_delta) { - int __pyx_v_n_roots; - int __pyx_v_n_victims; - int __pyx_v_roots; - int __pyx_v_i; - int __pyx_v_dist; - int __pyx_v_dt; - int __pyx_v_l; - __pyx_t_3ml3_DTYPE_t __pyx_v_beta; - __pyx_t_3ml3_DTYPE_t __pyx_v_ll; - __pyx_t_3ml3_DTYPE_t __pyx_v_beta_add; - __pyx_t_3ml3_DTYPE_t __pyx_v_max_beta; - __pyx_t_3ml3_DTYPE_t __pyx_v_max_beta_add; - PyObject *__pyx_v_parents = 0; - PyObject *__pyx_v_failures = 0; - PyObject *__pyx_v_successes = 0; - PyArrayObject *__pyx_v_probs = 0; - PyArrayObject *__pyx_v_probs_fail = 0; - PyArrayObject *__pyx_v_parent_dists = 0; - PyArrayObject *__pyx_v_parent_dts = 0; - PyObject *__pyx_v_dists = NULL; - PyObject *__pyx_v_dts = NULL; - PyObject *__pyx_v_s = NULL; - PyObject *__pyx_v_prob = NULL; - double __pyx_v_thresh; - PyObject *__pyx_v_seeds = NULL; - PyObject *__pyx_v_non_seeds = NULL; - int __pyx_v_max_roots; - CYTHON_UNUSED PyObject *__pyx_v_prnt = NULL; - PyObject *__pyx_v_w1 = NULL; - PyObject *__pyx_v_w2 = NULL; - PyObject *__pyx_v_w3 = NULL; - __Pyx_LocalBuf_ND __pyx_pybuffernd_parent_dists; - __Pyx_Buffer __pyx_pybuffer_parent_dists; - __Pyx_LocalBuf_ND __pyx_pybuffernd_parent_dts; - __Pyx_Buffer __pyx_pybuffer_parent_dts; - __Pyx_LocalBuf_ND __pyx_pybuffernd_probs; - __Pyx_Buffer __pyx_pybuffer_probs; - __Pyx_LocalBuf_ND __pyx_pybuffernd_probs_fail; - __Pyx_Buffer __pyx_pybuffer_probs_fail; - PyObject *__pyx_r = NULL; - __Pyx_RefNannyDeclarations - Py_ssize_t __pyx_t_1; - Py_ssize_t __pyx_t_2; - PyObject *__pyx_t_3 = NULL; - PyObject *__pyx_t_4 = NULL; - PyObject *__pyx_t_5 = NULL; - PyObject *__pyx_t_6 = NULL; - PyArrayObject *__pyx_t_7 = NULL; - PyArrayObject *__pyx_t_8 = NULL; - PyArrayObject *__pyx_t_9 = NULL; - PyArrayObject *__pyx_t_10 = NULL; - int __pyx_t_11; - int __pyx_t_12; - int __pyx_t_13; - Py_ssize_t __pyx_t_14; - PyObject *__pyx_t_15 = NULL; - PyObject *__pyx_t_16 = NULL; - PyObject *__pyx_t_17 = NULL; - PyObject *__pyx_t_18 = NULL; - PyObject *__pyx_t_19 = NULL; - PyObject *__pyx_t_20 = NULL; - PyObject *__pyx_t_21 = NULL; - PyObject *(*__pyx_t_22)(PyObject *); - int __pyx_t_23; - __pyx_t_3ml3_DTYPE_t __pyx_t_24; - __pyx_t_3ml3_DTYPE_t __pyx_t_25; - __pyx_t_3ml3_DTYPE_t __pyx_t_26; - int __pyx_t_27; - double __pyx_t_28; - int __pyx_t_29; - int __pyx_t_30; - int __pyx_t_31; - int __pyx_t_32; - int __pyx_t_33; - PyObject *(*__pyx_t_34)(PyObject *); - int __pyx_lineno = 0; - const char *__pyx_filename = NULL; - int __pyx_clineno = 0; - __Pyx_RefNannySetupContext("ml3", 0); - __pyx_pybuffer_probs.pybuffer.buf = NULL; - __pyx_pybuffer_probs.refcount = 0; - __pyx_pybuffernd_probs.data = NULL; - __pyx_pybuffernd_probs.rcbuffer = &__pyx_pybuffer_probs; - __pyx_pybuffer_probs_fail.pybuffer.buf = NULL; - __pyx_pybuffer_probs_fail.refcount = 0; - __pyx_pybuffernd_probs_fail.data = NULL; - __pyx_pybuffernd_probs_fail.rcbuffer = &__pyx_pybuffer_probs_fail; - __pyx_pybuffer_parent_dists.pybuffer.buf = NULL; - __pyx_pybuffer_parent_dists.refcount = 0; - __pyx_pybuffernd_parent_dists.data = NULL; - __pyx_pybuffernd_parent_dists.rcbuffer = &__pyx_pybuffer_parent_dists; - __pyx_pybuffer_parent_dts.pybuffer.buf = NULL; - __pyx_pybuffer_parent_dts.refcount = 0; - __pyx_pybuffernd_parent_dts.data = NULL; - __pyx_pybuffernd_parent_dts.rcbuffer = &__pyx_pybuffer_parent_dts; - - /* "ml3.pyx":33 - * DTYPE_t beta, ll, beta_add, max_beta, max_beta_add - * list parents, failures, successes - * n_roots, n_victims = len(root_victims), len(victims) # <<<<<<<<<<<<<< - * cdef: - * np.ndarray[DTYPE_t] probs = np.zeros(n_victims, dtype=DTYPE) - */ - if (unlikely(__pyx_v_root_victims == Py_None)) { - PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()"); - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 33; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - __pyx_t_1 = PyDict_Size(__pyx_v_root_victims); if (unlikely(__pyx_t_1 == -1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 33; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - if (unlikely(__pyx_v_victims == Py_None)) { - PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()"); - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 33; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - __pyx_t_2 = PyDict_Size(__pyx_v_victims); if (unlikely(__pyx_t_2 == -1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 33; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_v_n_roots = __pyx_t_1; - __pyx_v_n_victims = __pyx_t_2; - - /* "ml3.pyx":35 - * n_roots, n_victims = len(root_victims), len(victims) - * cdef: - * np.ndarray[DTYPE_t] probs = np.zeros(n_victims, dtype=DTYPE) # <<<<<<<<<<<<<< - * np.ndarray[DTYPE_t] probs_fail = np.zeros(n_victims, dtype=DTYPE) - * np.ndarray[DTYPE_t] parent_dists = np.zeros(n_victims, dtype=DTYPE) - */ - __pyx_t_3 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_zeros); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_n_victims); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_5 = PyTuple_New(1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_5); - PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_3); - __Pyx_GIVEREF(__pyx_t_3); - __pyx_t_3 = 0; - __pyx_t_3 = PyDict_New(); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_6 = __Pyx_GetModuleGlobalName(__pyx_n_s_DTYPE); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_6); - if (PyDict_SetItem(__pyx_t_3, __pyx_n_s_dtype, __pyx_t_6) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; - __pyx_t_6 = __Pyx_PyObject_Call(__pyx_t_4, __pyx_t_5, __pyx_t_3); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_6); - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - if (!(likely(((__pyx_t_6) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_6, __pyx_ptype_5numpy_ndarray))))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_t_7 = ((PyArrayObject *)__pyx_t_6); - { - __Pyx_BufFmt_StackElem __pyx_stack[1]; - if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_probs.rcbuffer->pybuffer, (PyObject*)__pyx_t_7, &__Pyx_TypeInfo_nn___pyx_t_3ml3_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack) == -1)) { - __pyx_v_probs = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_probs.rcbuffer->pybuffer.buf = NULL; - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } else {__pyx_pybuffernd_probs.diminfo[0].strides = __pyx_pybuffernd_probs.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_probs.diminfo[0].shape = __pyx_pybuffernd_probs.rcbuffer->pybuffer.shape[0]; - } - } - __pyx_t_7 = 0; - __pyx_v_probs = ((PyArrayObject *)__pyx_t_6); - __pyx_t_6 = 0; - - /* "ml3.pyx":36 - * cdef: - * np.ndarray[DTYPE_t] probs = np.zeros(n_victims, dtype=DTYPE) - * np.ndarray[DTYPE_t] probs_fail = np.zeros(n_victims, dtype=DTYPE) # <<<<<<<<<<<<<< - * np.ndarray[DTYPE_t] parent_dists = np.zeros(n_victims, dtype=DTYPE) - * np.ndarray[DTYPE_t] parent_dts = np.zeros(n_victims, dtype=DTYPE) - */ - __pyx_t_6 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_6); - __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_n_s_zeros); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; - __pyx_t_6 = __Pyx_PyInt_From_int(__pyx_v_n_victims); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_6); - __pyx_t_5 = PyTuple_New(1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_5); - PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_6); - __Pyx_GIVEREF(__pyx_t_6); - __pyx_t_6 = 0; - __pyx_t_6 = PyDict_New(); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_6); - __pyx_t_4 = __Pyx_GetModuleGlobalName(__pyx_n_s_DTYPE); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - if (PyDict_SetItem(__pyx_t_6, __pyx_n_s_dtype, __pyx_t_4) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __pyx_t_4 = __Pyx_PyObject_Call(__pyx_t_3, __pyx_t_5, __pyx_t_6); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; - __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; - if (!(likely(((__pyx_t_4) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_4, __pyx_ptype_5numpy_ndarray))))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_t_8 = ((PyArrayObject *)__pyx_t_4); - { - __Pyx_BufFmt_StackElem __pyx_stack[1]; - if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_probs_fail.rcbuffer->pybuffer, (PyObject*)__pyx_t_8, &__Pyx_TypeInfo_nn___pyx_t_3ml3_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack) == -1)) { - __pyx_v_probs_fail = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_probs_fail.rcbuffer->pybuffer.buf = NULL; - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } else {__pyx_pybuffernd_probs_fail.diminfo[0].strides = __pyx_pybuffernd_probs_fail.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_probs_fail.diminfo[0].shape = __pyx_pybuffernd_probs_fail.rcbuffer->pybuffer.shape[0]; - } - } - __pyx_t_8 = 0; - __pyx_v_probs_fail = ((PyArrayObject *)__pyx_t_4); - __pyx_t_4 = 0; - - /* "ml3.pyx":37 - * np.ndarray[DTYPE_t] probs = np.zeros(n_victims, dtype=DTYPE) - * np.ndarray[DTYPE_t] probs_fail = np.zeros(n_victims, dtype=DTYPE) - * np.ndarray[DTYPE_t] parent_dists = np.zeros(n_victims, dtype=DTYPE) # <<<<<<<<<<<<<< - * np.ndarray[DTYPE_t] parent_dts = np.zeros(n_victims, dtype=DTYPE) - * - */ - __pyx_t_4 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 37; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_t_4, __pyx_n_s_zeros); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 37; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_6); - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __pyx_t_4 = __Pyx_PyInt_From_int(__pyx_v_n_victims); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 37; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __pyx_t_5 = PyTuple_New(1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 37; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_5); - PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_4); - __Pyx_GIVEREF(__pyx_t_4); - __pyx_t_4 = 0; - __pyx_t_4 = PyDict_New(); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 37; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __pyx_t_3 = __Pyx_GetModuleGlobalName(__pyx_n_s_DTYPE); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 37; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - if (PyDict_SetItem(__pyx_t_4, __pyx_n_s_dtype, __pyx_t_3) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 37; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_3 = __Pyx_PyObject_Call(__pyx_t_6, __pyx_t_5, __pyx_t_4); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 37; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; - __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - if (!(likely(((__pyx_t_3) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_3, __pyx_ptype_5numpy_ndarray))))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 37; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_t_9 = ((PyArrayObject *)__pyx_t_3); - { - __Pyx_BufFmt_StackElem __pyx_stack[1]; - if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_parent_dists.rcbuffer->pybuffer, (PyObject*)__pyx_t_9, &__Pyx_TypeInfo_nn___pyx_t_3ml3_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack) == -1)) { - __pyx_v_parent_dists = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_parent_dists.rcbuffer->pybuffer.buf = NULL; - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 37; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } else {__pyx_pybuffernd_parent_dists.diminfo[0].strides = __pyx_pybuffernd_parent_dists.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_parent_dists.diminfo[0].shape = __pyx_pybuffernd_parent_dists.rcbuffer->pybuffer.shape[0]; - } - } - __pyx_t_9 = 0; - __pyx_v_parent_dists = ((PyArrayObject *)__pyx_t_3); - __pyx_t_3 = 0; - - /* "ml3.pyx":38 - * np.ndarray[DTYPE_t] probs_fail = np.zeros(n_victims, dtype=DTYPE) - * np.ndarray[DTYPE_t] parent_dists = np.zeros(n_victims, dtype=DTYPE) - * np.ndarray[DTYPE_t] parent_dts = np.zeros(n_victims, dtype=DTYPE) # <<<<<<<<<<<<<< - * - * # loop through victims - */ - __pyx_t_3 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_zeros); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_n_victims); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_5 = PyTuple_New(1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_5); - PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_3); - __Pyx_GIVEREF(__pyx_t_3); - __pyx_t_3 = 0; - __pyx_t_3 = PyDict_New(); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_6 = __Pyx_GetModuleGlobalName(__pyx_n_s_DTYPE); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_6); - if (PyDict_SetItem(__pyx_t_3, __pyx_n_s_dtype, __pyx_t_6) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; - __pyx_t_6 = __Pyx_PyObject_Call(__pyx_t_4, __pyx_t_5, __pyx_t_3); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_6); - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - if (!(likely(((__pyx_t_6) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_6, __pyx_ptype_5numpy_ndarray))))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_t_10 = ((PyArrayObject *)__pyx_t_6); - { - __Pyx_BufFmt_StackElem __pyx_stack[1]; - if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_parent_dts.rcbuffer->pybuffer, (PyObject*)__pyx_t_10, &__Pyx_TypeInfo_nn___pyx_t_3ml3_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack) == -1)) { - __pyx_v_parent_dts = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_parent_dts.rcbuffer->pybuffer.buf = NULL; - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } else {__pyx_pybuffernd_parent_dts.diminfo[0].strides = __pyx_pybuffernd_parent_dts.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_parent_dts.diminfo[0].shape = __pyx_pybuffernd_parent_dts.rcbuffer->pybuffer.shape[0]; - } - } - __pyx_t_10 = 0; - __pyx_v_parent_dts = ((PyArrayObject *)__pyx_t_6); - __pyx_t_6 = 0; - - /* "ml3.pyx":41 - * - * # loop through victims - * for i, parents in enumerate(victims.itervalues()): # <<<<<<<<<<<<<< - * # for each victim node i, compute the probability that all its parents - * # fail to infect it, also computes the probability that its most - */ - __pyx_t_11 = 0; - __pyx_t_2 = 0; - if (unlikely(__pyx_v_victims == Py_None)) { - PyErr_Format(PyExc_AttributeError, "'NoneType' object has no attribute '%s'", "itervalues"); - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 41; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - __pyx_t_3 = __Pyx_dict_iterator(__pyx_v_victims, 1, __pyx_n_s_itervalues, (&__pyx_t_1), (&__pyx_t_12)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 41; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __Pyx_XDECREF(__pyx_t_6); - __pyx_t_6 = __pyx_t_3; - __pyx_t_3 = 0; - while (1) { - __pyx_t_13 = __Pyx_dict_iter_next(__pyx_t_6, __pyx_t_1, &__pyx_t_2, NULL, &__pyx_t_3, NULL, __pyx_t_12); - if (unlikely(__pyx_t_13 == 0)) break; - if (unlikely(__pyx_t_13 == -1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 41; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - if (!(likely(PyList_CheckExact(__pyx_t_3))||((__pyx_t_3) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(__pyx_t_3)->tp_name), 0))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 41; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_XDECREF_SET(__pyx_v_parents, ((PyObject*)__pyx_t_3)); - __pyx_t_3 = 0; - __pyx_v_i = __pyx_t_11; - __pyx_t_11 = (__pyx_t_11 + 1); - - /* "ml3.pyx":45 - * # fail to infect it, also computes the probability that its most - * # likely parent infects it - * failures = [weight_failure(dist, dt, alpha, delta, w1, w2, w3) # <<<<<<<<<<<<<< - * for (prnt, dist, dt, w1, w2, w3) in parents] - * probs_fail[i] = sum(failures) - */ - __pyx_t_3 = PyList_New(0); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 45; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - - /* "ml3.pyx":46 - * # likely parent infects it - * failures = [weight_failure(dist, dt, alpha, delta, w1, w2, w3) - * for (prnt, dist, dt, w1, w2, w3) in parents] # <<<<<<<<<<<<<< - * probs_fail[i] = sum(failures) - * successes = [weight_success(dist, dt, alpha, delta, w1, w2, w3) - */ - if (unlikely(__pyx_v_parents == Py_None)) { - PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 46; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - __pyx_t_5 = __pyx_v_parents; __Pyx_INCREF(__pyx_t_5); __pyx_t_14 = 0; - for (;;) { - if (__pyx_t_14 >= PyList_GET_SIZE(__pyx_t_5)) break; - #if CYTHON_COMPILING_IN_CPYTHON - __pyx_t_4 = PyList_GET_ITEM(__pyx_t_5, __pyx_t_14); __Pyx_INCREF(__pyx_t_4); __pyx_t_14++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 46; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #else - __pyx_t_4 = PySequence_ITEM(__pyx_t_5, __pyx_t_14); __pyx_t_14++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 46; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #endif - if ((likely(PyTuple_CheckExact(__pyx_t_4))) || (PyList_CheckExact(__pyx_t_4))) { - PyObject* sequence = __pyx_t_4; - #if CYTHON_COMPILING_IN_CPYTHON - Py_ssize_t size = Py_SIZE(sequence); - #else - Py_ssize_t size = PySequence_Size(sequence); - #endif - if (unlikely(size != 6)) { - if (size > 6) __Pyx_RaiseTooManyValuesError(6); - else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size); - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 46; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - #if CYTHON_COMPILING_IN_CPYTHON - if (likely(PyTuple_CheckExact(sequence))) { - __pyx_t_15 = PyTuple_GET_ITEM(sequence, 0); - __pyx_t_16 = PyTuple_GET_ITEM(sequence, 1); - __pyx_t_17 = PyTuple_GET_ITEM(sequence, 2); - __pyx_t_18 = PyTuple_GET_ITEM(sequence, 3); - __pyx_t_19 = PyTuple_GET_ITEM(sequence, 4); - __pyx_t_20 = PyTuple_GET_ITEM(sequence, 5); - } else { - __pyx_t_15 = PyList_GET_ITEM(sequence, 0); - __pyx_t_16 = PyList_GET_ITEM(sequence, 1); - __pyx_t_17 = PyList_GET_ITEM(sequence, 2); - __pyx_t_18 = PyList_GET_ITEM(sequence, 3); - __pyx_t_19 = PyList_GET_ITEM(sequence, 4); - __pyx_t_20 = PyList_GET_ITEM(sequence, 5); - } - __Pyx_INCREF(__pyx_t_15); - __Pyx_INCREF(__pyx_t_16); - __Pyx_INCREF(__pyx_t_17); - __Pyx_INCREF(__pyx_t_18); - __Pyx_INCREF(__pyx_t_19); - __Pyx_INCREF(__pyx_t_20); - #else - { - Py_ssize_t i; - PyObject** temps[6] = {&__pyx_t_15,&__pyx_t_16,&__pyx_t_17,&__pyx_t_18,&__pyx_t_19,&__pyx_t_20}; - for (i=0; i < 6; i++) { - PyObject* item = PySequence_ITEM(sequence, i); if (unlikely(!item)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 46; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(item); - *(temps[i]) = item; - } - } - #endif - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - } else { - Py_ssize_t index = -1; - PyObject** temps[6] = {&__pyx_t_15,&__pyx_t_16,&__pyx_t_17,&__pyx_t_18,&__pyx_t_19,&__pyx_t_20}; - __pyx_t_21 = PyObject_GetIter(__pyx_t_4); if (unlikely(!__pyx_t_21)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 46; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_21); - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __pyx_t_22 = Py_TYPE(__pyx_t_21)->tp_iternext; - for (index=0; index < 6; index++) { - PyObject* item = __pyx_t_22(__pyx_t_21); if (unlikely(!item)) goto __pyx_L7_unpacking_failed; - __Pyx_GOTREF(item); - *(temps[index]) = item; - } - if (__Pyx_IternextUnpackEndCheck(__pyx_t_22(__pyx_t_21), 6) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 46; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_t_22 = NULL; - __Pyx_DECREF(__pyx_t_21); __pyx_t_21 = 0; - goto __pyx_L8_unpacking_done; - __pyx_L7_unpacking_failed:; - __Pyx_DECREF(__pyx_t_21); __pyx_t_21 = 0; - __pyx_t_22 = NULL; - if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index); - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 46; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_L8_unpacking_done:; - } - __pyx_t_13 = __Pyx_PyInt_As_int(__pyx_t_16); if (unlikely((__pyx_t_13 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 46; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_16); __pyx_t_16 = 0; - __pyx_t_23 = __Pyx_PyInt_As_int(__pyx_t_17); if (unlikely((__pyx_t_23 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 46; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_17); __pyx_t_17 = 0; - __Pyx_XDECREF_SET(__pyx_v_prnt, __pyx_t_15); - __pyx_t_15 = 0; - __pyx_v_dist = __pyx_t_13; - __pyx_v_dt = __pyx_t_23; - __Pyx_XDECREF_SET(__pyx_v_w1, __pyx_t_18); - __pyx_t_18 = 0; - __Pyx_XDECREF_SET(__pyx_v_w2, __pyx_t_19); - __pyx_t_19 = 0; - __Pyx_XDECREF_SET(__pyx_v_w3, __pyx_t_20); - __pyx_t_20 = 0; - - /* "ml3.pyx":45 - * # fail to infect it, also computes the probability that its most - * # likely parent infects it - * failures = [weight_failure(dist, dt, alpha, delta, w1, w2, w3) # <<<<<<<<<<<<<< - * for (prnt, dist, dt, w1, w2, w3) in parents] - * probs_fail[i] = sum(failures) - */ - __pyx_t_24 = __pyx_PyFloat_AsDouble(__pyx_v_w1); if (unlikely((__pyx_t_24 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 45; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_t_25 = __pyx_PyFloat_AsDouble(__pyx_v_w2); if (unlikely((__pyx_t_25 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 45; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_t_26 = __pyx_PyFloat_AsDouble(__pyx_v_w3); if (unlikely((__pyx_t_26 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 45; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_t_4 = PyFloat_FromDouble(__pyx_f_3ml3_weight_failure(__pyx_v_dist, __pyx_v_dt, __pyx_v_alpha, __pyx_v_delta, __pyx_t_24, __pyx_t_25, __pyx_t_26)); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 45; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - if (unlikely(__Pyx_ListComp_Append(__pyx_t_3, (PyObject*)__pyx_t_4))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 45; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - - /* "ml3.pyx":46 - * # likely parent infects it - * failures = [weight_failure(dist, dt, alpha, delta, w1, w2, w3) - * for (prnt, dist, dt, w1, w2, w3) in parents] # <<<<<<<<<<<<<< - * probs_fail[i] = sum(failures) - * successes = [weight_success(dist, dt, alpha, delta, w1, w2, w3) - */ - } - __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; - __Pyx_XDECREF_SET(__pyx_v_failures, ((PyObject*)__pyx_t_3)); - __pyx_t_3 = 0; - - /* "ml3.pyx":47 - * failures = [weight_failure(dist, dt, alpha, delta, w1, w2, w3) - * for (prnt, dist, dt, w1, w2, w3) in parents] - * probs_fail[i] = sum(failures) # <<<<<<<<<<<<<< - * successes = [weight_success(dist, dt, alpha, delta, w1, w2, w3) - * for (prnt, dist, dt, w1, w2, w3) in parents] - */ - __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 47; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __Pyx_INCREF(__pyx_v_failures); - PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_v_failures); - __Pyx_GIVEREF(__pyx_v_failures); - __pyx_t_5 = __Pyx_PyObject_Call(__pyx_builtin_sum, __pyx_t_3, NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 47; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_5); - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_26 = __pyx_PyFloat_AsDouble(__pyx_t_5); if (unlikely((__pyx_t_26 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 47; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; - __pyx_t_23 = __pyx_v_i; - if (__pyx_t_23 < 0) __pyx_t_23 += __pyx_pybuffernd_probs_fail.diminfo[0].shape; - *__Pyx_BufPtrStrided1d(__pyx_t_3ml3_DTYPE_t *, __pyx_pybuffernd_probs_fail.rcbuffer->pybuffer.buf, __pyx_t_23, __pyx_pybuffernd_probs_fail.diminfo[0].strides) = __pyx_t_26; - - /* "ml3.pyx":48 - * for (prnt, dist, dt, w1, w2, w3) in parents] - * probs_fail[i] = sum(failures) - * successes = [weight_success(dist, dt, alpha, delta, w1, w2, w3) # <<<<<<<<<<<<<< - * for (prnt, dist, dt, w1, w2, w3) in parents] - * dists = [dist for (prnt, dist, dt, w1, w2, w3) in parents] - */ - __pyx_t_5 = PyList_New(0); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 48; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_5); - - /* "ml3.pyx":49 - * probs_fail[i] = sum(failures) - * successes = [weight_success(dist, dt, alpha, delta, w1, w2, w3) - * for (prnt, dist, dt, w1, w2, w3) in parents] # <<<<<<<<<<<<<< - * dists = [dist for (prnt, dist, dt, w1, w2, w3) in parents] - * dts = [dt for (prnt, dist, dt, w1, w2, w3) in parents] - */ - if (unlikely(__pyx_v_parents == Py_None)) { - PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 49; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - __pyx_t_3 = __pyx_v_parents; __Pyx_INCREF(__pyx_t_3); __pyx_t_14 = 0; - for (;;) { - if (__pyx_t_14 >= PyList_GET_SIZE(__pyx_t_3)) break; - #if CYTHON_COMPILING_IN_CPYTHON - __pyx_t_4 = PyList_GET_ITEM(__pyx_t_3, __pyx_t_14); __Pyx_INCREF(__pyx_t_4); __pyx_t_14++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 49; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #else - __pyx_t_4 = PySequence_ITEM(__pyx_t_3, __pyx_t_14); __pyx_t_14++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 49; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #endif - if ((likely(PyTuple_CheckExact(__pyx_t_4))) || (PyList_CheckExact(__pyx_t_4))) { - PyObject* sequence = __pyx_t_4; - #if CYTHON_COMPILING_IN_CPYTHON - Py_ssize_t size = Py_SIZE(sequence); - #else - Py_ssize_t size = PySequence_Size(sequence); - #endif - if (unlikely(size != 6)) { - if (size > 6) __Pyx_RaiseTooManyValuesError(6); - else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size); - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 49; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - #if CYTHON_COMPILING_IN_CPYTHON - if (likely(PyTuple_CheckExact(sequence))) { - __pyx_t_20 = PyTuple_GET_ITEM(sequence, 0); - __pyx_t_19 = PyTuple_GET_ITEM(sequence, 1); - __pyx_t_18 = PyTuple_GET_ITEM(sequence, 2); - __pyx_t_17 = PyTuple_GET_ITEM(sequence, 3); - __pyx_t_16 = PyTuple_GET_ITEM(sequence, 4); - __pyx_t_15 = PyTuple_GET_ITEM(sequence, 5); - } else { - __pyx_t_20 = PyList_GET_ITEM(sequence, 0); - __pyx_t_19 = PyList_GET_ITEM(sequence, 1); - __pyx_t_18 = PyList_GET_ITEM(sequence, 2); - __pyx_t_17 = PyList_GET_ITEM(sequence, 3); - __pyx_t_16 = PyList_GET_ITEM(sequence, 4); - __pyx_t_15 = PyList_GET_ITEM(sequence, 5); - } - __Pyx_INCREF(__pyx_t_20); - __Pyx_INCREF(__pyx_t_19); - __Pyx_INCREF(__pyx_t_18); - __Pyx_INCREF(__pyx_t_17); - __Pyx_INCREF(__pyx_t_16); - __Pyx_INCREF(__pyx_t_15); - #else - { - Py_ssize_t i; - PyObject** temps[6] = {&__pyx_t_20,&__pyx_t_19,&__pyx_t_18,&__pyx_t_17,&__pyx_t_16,&__pyx_t_15}; - for (i=0; i < 6; i++) { - PyObject* item = PySequence_ITEM(sequence, i); if (unlikely(!item)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 49; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(item); - *(temps[i]) = item; - } - } - #endif - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - } else { - Py_ssize_t index = -1; - PyObject** temps[6] = {&__pyx_t_20,&__pyx_t_19,&__pyx_t_18,&__pyx_t_17,&__pyx_t_16,&__pyx_t_15}; - __pyx_t_21 = PyObject_GetIter(__pyx_t_4); if (unlikely(!__pyx_t_21)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 49; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_21); - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __pyx_t_22 = Py_TYPE(__pyx_t_21)->tp_iternext; - for (index=0; index < 6; index++) { - PyObject* item = __pyx_t_22(__pyx_t_21); if (unlikely(!item)) goto __pyx_L11_unpacking_failed; - __Pyx_GOTREF(item); - *(temps[index]) = item; - } - if (__Pyx_IternextUnpackEndCheck(__pyx_t_22(__pyx_t_21), 6) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 49; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_t_22 = NULL; - __Pyx_DECREF(__pyx_t_21); __pyx_t_21 = 0; - goto __pyx_L12_unpacking_done; - __pyx_L11_unpacking_failed:; - __Pyx_DECREF(__pyx_t_21); __pyx_t_21 = 0; - __pyx_t_22 = NULL; - if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index); - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 49; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_L12_unpacking_done:; - } - __pyx_t_13 = __Pyx_PyInt_As_int(__pyx_t_19); if (unlikely((__pyx_t_13 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 49; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_19); __pyx_t_19 = 0; - __pyx_t_27 = __Pyx_PyInt_As_int(__pyx_t_18); if (unlikely((__pyx_t_27 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 49; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_18); __pyx_t_18 = 0; - __Pyx_XDECREF_SET(__pyx_v_prnt, __pyx_t_20); - __pyx_t_20 = 0; - __pyx_v_dist = __pyx_t_13; - __pyx_v_dt = __pyx_t_27; - __Pyx_XDECREF_SET(__pyx_v_w1, __pyx_t_17); - __pyx_t_17 = 0; - __Pyx_XDECREF_SET(__pyx_v_w2, __pyx_t_16); - __pyx_t_16 = 0; - __Pyx_XDECREF_SET(__pyx_v_w3, __pyx_t_15); - __pyx_t_15 = 0; - - /* "ml3.pyx":48 - * for (prnt, dist, dt, w1, w2, w3) in parents] - * probs_fail[i] = sum(failures) - * successes = [weight_success(dist, dt, alpha, delta, w1, w2, w3) # <<<<<<<<<<<<<< - * for (prnt, dist, dt, w1, w2, w3) in parents] - * dists = [dist for (prnt, dist, dt, w1, w2, w3) in parents] - */ - __pyx_t_26 = __pyx_PyFloat_AsDouble(__pyx_v_w1); if (unlikely((__pyx_t_26 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 48; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_t_25 = __pyx_PyFloat_AsDouble(__pyx_v_w2); if (unlikely((__pyx_t_25 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 48; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_t_24 = __pyx_PyFloat_AsDouble(__pyx_v_w3); if (unlikely((__pyx_t_24 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 48; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_t_4 = PyFloat_FromDouble(__pyx_f_3ml3_weight_success(__pyx_v_dist, __pyx_v_dt, __pyx_v_alpha, __pyx_v_delta, __pyx_t_26, __pyx_t_25, __pyx_t_24)); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 48; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - if (unlikely(__Pyx_ListComp_Append(__pyx_t_5, (PyObject*)__pyx_t_4))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 48; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - - /* "ml3.pyx":49 - * probs_fail[i] = sum(failures) - * successes = [weight_success(dist, dt, alpha, delta, w1, w2, w3) - * for (prnt, dist, dt, w1, w2, w3) in parents] # <<<<<<<<<<<<<< - * dists = [dist for (prnt, dist, dt, w1, w2, w3) in parents] - * dts = [dt for (prnt, dist, dt, w1, w2, w3) in parents] - */ - } - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __Pyx_XDECREF_SET(__pyx_v_successes, ((PyObject*)__pyx_t_5)); - __pyx_t_5 = 0; - - /* "ml3.pyx":50 - * successes = [weight_success(dist, dt, alpha, delta, w1, w2, w3) - * for (prnt, dist, dt, w1, w2, w3) in parents] - * dists = [dist for (prnt, dist, dt, w1, w2, w3) in parents] # <<<<<<<<<<<<<< - * dts = [dt for (prnt, dist, dt, w1, w2, w3) in parents] - * # find parent that maximizes log(p) - log(\tilde{p}) - */ - __pyx_t_5 = PyList_New(0); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_5); - if (unlikely(__pyx_v_parents == Py_None)) { - PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - __pyx_t_3 = __pyx_v_parents; __Pyx_INCREF(__pyx_t_3); __pyx_t_14 = 0; - for (;;) { - if (__pyx_t_14 >= PyList_GET_SIZE(__pyx_t_3)) break; - #if CYTHON_COMPILING_IN_CPYTHON - __pyx_t_4 = PyList_GET_ITEM(__pyx_t_3, __pyx_t_14); __Pyx_INCREF(__pyx_t_4); __pyx_t_14++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #else - __pyx_t_4 = PySequence_ITEM(__pyx_t_3, __pyx_t_14); __pyx_t_14++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #endif - if ((likely(PyTuple_CheckExact(__pyx_t_4))) || (PyList_CheckExact(__pyx_t_4))) { - PyObject* sequence = __pyx_t_4; - #if CYTHON_COMPILING_IN_CPYTHON - Py_ssize_t size = Py_SIZE(sequence); - #else - Py_ssize_t size = PySequence_Size(sequence); - #endif - if (unlikely(size != 6)) { - if (size > 6) __Pyx_RaiseTooManyValuesError(6); - else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size); - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - #if CYTHON_COMPILING_IN_CPYTHON - if (likely(PyTuple_CheckExact(sequence))) { - __pyx_t_15 = PyTuple_GET_ITEM(sequence, 0); - __pyx_t_16 = PyTuple_GET_ITEM(sequence, 1); - __pyx_t_17 = PyTuple_GET_ITEM(sequence, 2); - __pyx_t_18 = PyTuple_GET_ITEM(sequence, 3); - __pyx_t_19 = PyTuple_GET_ITEM(sequence, 4); - __pyx_t_20 = PyTuple_GET_ITEM(sequence, 5); - } else { - __pyx_t_15 = PyList_GET_ITEM(sequence, 0); - __pyx_t_16 = PyList_GET_ITEM(sequence, 1); - __pyx_t_17 = PyList_GET_ITEM(sequence, 2); - __pyx_t_18 = PyList_GET_ITEM(sequence, 3); - __pyx_t_19 = PyList_GET_ITEM(sequence, 4); - __pyx_t_20 = PyList_GET_ITEM(sequence, 5); - } - __Pyx_INCREF(__pyx_t_15); - __Pyx_INCREF(__pyx_t_16); - __Pyx_INCREF(__pyx_t_17); - __Pyx_INCREF(__pyx_t_18); - __Pyx_INCREF(__pyx_t_19); - __Pyx_INCREF(__pyx_t_20); - #else - { - Py_ssize_t i; - PyObject** temps[6] = {&__pyx_t_15,&__pyx_t_16,&__pyx_t_17,&__pyx_t_18,&__pyx_t_19,&__pyx_t_20}; - for (i=0; i < 6; i++) { - PyObject* item = PySequence_ITEM(sequence, i); if (unlikely(!item)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(item); - *(temps[i]) = item; - } - } - #endif - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - } else { - Py_ssize_t index = -1; - PyObject** temps[6] = {&__pyx_t_15,&__pyx_t_16,&__pyx_t_17,&__pyx_t_18,&__pyx_t_19,&__pyx_t_20}; - __pyx_t_21 = PyObject_GetIter(__pyx_t_4); if (unlikely(!__pyx_t_21)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_21); - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __pyx_t_22 = Py_TYPE(__pyx_t_21)->tp_iternext; - for (index=0; index < 6; index++) { - PyObject* item = __pyx_t_22(__pyx_t_21); if (unlikely(!item)) goto __pyx_L15_unpacking_failed; - __Pyx_GOTREF(item); - *(temps[index]) = item; - } - if (__Pyx_IternextUnpackEndCheck(__pyx_t_22(__pyx_t_21), 6) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_t_22 = NULL; - __Pyx_DECREF(__pyx_t_21); __pyx_t_21 = 0; - goto __pyx_L16_unpacking_done; - __pyx_L15_unpacking_failed:; - __Pyx_DECREF(__pyx_t_21); __pyx_t_21 = 0; - __pyx_t_22 = NULL; - if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index); - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_L16_unpacking_done:; - } - __pyx_t_27 = __Pyx_PyInt_As_int(__pyx_t_16); if (unlikely((__pyx_t_27 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_16); __pyx_t_16 = 0; - __pyx_t_13 = __Pyx_PyInt_As_int(__pyx_t_17); if (unlikely((__pyx_t_13 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_17); __pyx_t_17 = 0; - __Pyx_XDECREF_SET(__pyx_v_prnt, __pyx_t_15); - __pyx_t_15 = 0; - __pyx_v_dist = __pyx_t_27; - __pyx_v_dt = __pyx_t_13; - __Pyx_XDECREF_SET(__pyx_v_w1, __pyx_t_18); - __pyx_t_18 = 0; - __Pyx_XDECREF_SET(__pyx_v_w2, __pyx_t_19); - __pyx_t_19 = 0; - __Pyx_XDECREF_SET(__pyx_v_w3, __pyx_t_20); - __pyx_t_20 = 0; - __pyx_t_4 = __Pyx_PyInt_From_int(__pyx_v_dist); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - if (unlikely(__Pyx_ListComp_Append(__pyx_t_5, (PyObject*)__pyx_t_4))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - } - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __Pyx_XDECREF_SET(__pyx_v_dists, ((PyObject*)__pyx_t_5)); - __pyx_t_5 = 0; - - /* "ml3.pyx":51 - * for (prnt, dist, dt, w1, w2, w3) in parents] - * dists = [dist for (prnt, dist, dt, w1, w2, w3) in parents] - * dts = [dt for (prnt, dist, dt, w1, w2, w3) in parents] # <<<<<<<<<<<<<< - * # find parent that maximizes log(p) - log(\tilde{p}) - * # probs[i] = max(s - failures[l] for l, s in enumerate(successes)) - */ - __pyx_t_5 = PyList_New(0); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_5); - if (unlikely(__pyx_v_parents == Py_None)) { - PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - __pyx_t_3 = __pyx_v_parents; __Pyx_INCREF(__pyx_t_3); __pyx_t_14 = 0; - for (;;) { - if (__pyx_t_14 >= PyList_GET_SIZE(__pyx_t_3)) break; - #if CYTHON_COMPILING_IN_CPYTHON - __pyx_t_4 = PyList_GET_ITEM(__pyx_t_3, __pyx_t_14); __Pyx_INCREF(__pyx_t_4); __pyx_t_14++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #else - __pyx_t_4 = PySequence_ITEM(__pyx_t_3, __pyx_t_14); __pyx_t_14++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #endif - if ((likely(PyTuple_CheckExact(__pyx_t_4))) || (PyList_CheckExact(__pyx_t_4))) { - PyObject* sequence = __pyx_t_4; - #if CYTHON_COMPILING_IN_CPYTHON - Py_ssize_t size = Py_SIZE(sequence); - #else - Py_ssize_t size = PySequence_Size(sequence); - #endif - if (unlikely(size != 6)) { - if (size > 6) __Pyx_RaiseTooManyValuesError(6); - else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size); - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - #if CYTHON_COMPILING_IN_CPYTHON - if (likely(PyTuple_CheckExact(sequence))) { - __pyx_t_20 = PyTuple_GET_ITEM(sequence, 0); - __pyx_t_19 = PyTuple_GET_ITEM(sequence, 1); - __pyx_t_18 = PyTuple_GET_ITEM(sequence, 2); - __pyx_t_17 = PyTuple_GET_ITEM(sequence, 3); - __pyx_t_16 = PyTuple_GET_ITEM(sequence, 4); - __pyx_t_15 = PyTuple_GET_ITEM(sequence, 5); - } else { - __pyx_t_20 = PyList_GET_ITEM(sequence, 0); - __pyx_t_19 = PyList_GET_ITEM(sequence, 1); - __pyx_t_18 = PyList_GET_ITEM(sequence, 2); - __pyx_t_17 = PyList_GET_ITEM(sequence, 3); - __pyx_t_16 = PyList_GET_ITEM(sequence, 4); - __pyx_t_15 = PyList_GET_ITEM(sequence, 5); - } - __Pyx_INCREF(__pyx_t_20); - __Pyx_INCREF(__pyx_t_19); - __Pyx_INCREF(__pyx_t_18); - __Pyx_INCREF(__pyx_t_17); - __Pyx_INCREF(__pyx_t_16); - __Pyx_INCREF(__pyx_t_15); - #else - { - Py_ssize_t i; - PyObject** temps[6] = {&__pyx_t_20,&__pyx_t_19,&__pyx_t_18,&__pyx_t_17,&__pyx_t_16,&__pyx_t_15}; - for (i=0; i < 6; i++) { - PyObject* item = PySequence_ITEM(sequence, i); if (unlikely(!item)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(item); - *(temps[i]) = item; - } - } - #endif - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - } else { - Py_ssize_t index = -1; - PyObject** temps[6] = {&__pyx_t_20,&__pyx_t_19,&__pyx_t_18,&__pyx_t_17,&__pyx_t_16,&__pyx_t_15}; - __pyx_t_21 = PyObject_GetIter(__pyx_t_4); if (unlikely(!__pyx_t_21)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_21); - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __pyx_t_22 = Py_TYPE(__pyx_t_21)->tp_iternext; - for (index=0; index < 6; index++) { - PyObject* item = __pyx_t_22(__pyx_t_21); if (unlikely(!item)) goto __pyx_L19_unpacking_failed; - __Pyx_GOTREF(item); - *(temps[index]) = item; - } - if (__Pyx_IternextUnpackEndCheck(__pyx_t_22(__pyx_t_21), 6) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_t_22 = NULL; - __Pyx_DECREF(__pyx_t_21); __pyx_t_21 = 0; - goto __pyx_L20_unpacking_done; - __pyx_L19_unpacking_failed:; - __Pyx_DECREF(__pyx_t_21); __pyx_t_21 = 0; - __pyx_t_22 = NULL; - if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index); - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_L20_unpacking_done:; - } - __pyx_t_13 = __Pyx_PyInt_As_int(__pyx_t_19); if (unlikely((__pyx_t_13 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_19); __pyx_t_19 = 0; - __pyx_t_27 = __Pyx_PyInt_As_int(__pyx_t_18); if (unlikely((__pyx_t_27 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_18); __pyx_t_18 = 0; - __Pyx_XDECREF_SET(__pyx_v_prnt, __pyx_t_20); - __pyx_t_20 = 0; - __pyx_v_dist = __pyx_t_13; - __pyx_v_dt = __pyx_t_27; - __Pyx_XDECREF_SET(__pyx_v_w1, __pyx_t_17); - __pyx_t_17 = 0; - __Pyx_XDECREF_SET(__pyx_v_w2, __pyx_t_16); - __pyx_t_16 = 0; - __Pyx_XDECREF_SET(__pyx_v_w3, __pyx_t_15); - __pyx_t_15 = 0; - __pyx_t_4 = __Pyx_PyInt_From_int(__pyx_v_dt); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - if (unlikely(__Pyx_ListComp_Append(__pyx_t_5, (PyObject*)__pyx_t_4))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - } - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __Pyx_XDECREF_SET(__pyx_v_dts, ((PyObject*)__pyx_t_5)); - __pyx_t_5 = 0; - - /* "ml3.pyx":54 - * # find parent that maximizes log(p) - log(\tilde{p}) - * # probs[i] = max(s - failures[l] for l, s in enumerate(successes)) - * probs[i] = float("-inf") # <<<<<<<<<<<<<< - * for l, s in enumerate(successes): - * prob = s - failures[l] - */ - __pyx_t_28 = __Pyx_PyObject_AsDouble(__pyx_kp_s_inf); if (unlikely(__pyx_t_28 == ((double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 54; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_t_27 = __pyx_v_i; - if (__pyx_t_27 < 0) __pyx_t_27 += __pyx_pybuffernd_probs.diminfo[0].shape; - *__Pyx_BufPtrStrided1d(__pyx_t_3ml3_DTYPE_t *, __pyx_pybuffernd_probs.rcbuffer->pybuffer.buf, __pyx_t_27, __pyx_pybuffernd_probs.diminfo[0].strides) = __pyx_t_28; - - /* "ml3.pyx":55 - * # probs[i] = max(s - failures[l] for l, s in enumerate(successes)) - * probs[i] = float("-inf") - * for l, s in enumerate(successes): # <<<<<<<<<<<<<< - * prob = s - failures[l] - * if prob > probs[i]: - */ - __pyx_t_13 = 0; - __pyx_t_5 = __pyx_v_successes; __Pyx_INCREF(__pyx_t_5); __pyx_t_14 = 0; - for (;;) { - if (__pyx_t_14 >= PyList_GET_SIZE(__pyx_t_5)) break; - #if CYTHON_COMPILING_IN_CPYTHON - __pyx_t_3 = PyList_GET_ITEM(__pyx_t_5, __pyx_t_14); __Pyx_INCREF(__pyx_t_3); __pyx_t_14++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 55; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #else - __pyx_t_3 = PySequence_ITEM(__pyx_t_5, __pyx_t_14); __pyx_t_14++; if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 55; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #endif - __Pyx_XDECREF_SET(__pyx_v_s, __pyx_t_3); - __pyx_t_3 = 0; - __pyx_v_l = __pyx_t_13; - __pyx_t_13 = (__pyx_t_13 + 1); - - /* "ml3.pyx":56 - * probs[i] = float("-inf") - * for l, s in enumerate(successes): - * prob = s - failures[l] # <<<<<<<<<<<<<< - * if prob > probs[i]: - * probs[i] = prob - */ - __pyx_t_3 = __Pyx_GetItemInt_List(__pyx_v_failures, __pyx_v_l, int, 1, __Pyx_PyInt_From_int, 1, 1, 0); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 56; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_4 = PyNumber_Subtract(__pyx_v_s, __pyx_t_3); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 56; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __Pyx_XDECREF_SET(__pyx_v_prob, __pyx_t_4); - __pyx_t_4 = 0; - - /* "ml3.pyx":57 - * for l, s in enumerate(successes): - * prob = s - failures[l] - * if prob > probs[i]: # <<<<<<<<<<<<<< - * probs[i] = prob - * parent_dists[i] = dists[l] - */ - __pyx_t_29 = __pyx_v_i; - if (__pyx_t_29 < 0) __pyx_t_29 += __pyx_pybuffernd_probs.diminfo[0].shape; - __pyx_t_4 = PyFloat_FromDouble((*__Pyx_BufPtrStrided1d(__pyx_t_3ml3_DTYPE_t *, __pyx_pybuffernd_probs.rcbuffer->pybuffer.buf, __pyx_t_29, __pyx_pybuffernd_probs.diminfo[0].strides))); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 57; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __pyx_t_3 = PyObject_RichCompare(__pyx_v_prob, __pyx_t_4, Py_GT); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 57; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __pyx_t_30 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_30 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 57; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - if (__pyx_t_30) { - - /* "ml3.pyx":58 - * prob = s - failures[l] - * if prob > probs[i]: - * probs[i] = prob # <<<<<<<<<<<<<< - * parent_dists[i] = dists[l] - * parent_dts[i] = dts[l] - */ - __pyx_t_24 = __pyx_PyFloat_AsDouble(__pyx_v_prob); if (unlikely((__pyx_t_24 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 58; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_t_31 = __pyx_v_i; - if (__pyx_t_31 < 0) __pyx_t_31 += __pyx_pybuffernd_probs.diminfo[0].shape; - *__Pyx_BufPtrStrided1d(__pyx_t_3ml3_DTYPE_t *, __pyx_pybuffernd_probs.rcbuffer->pybuffer.buf, __pyx_t_31, __pyx_pybuffernd_probs.diminfo[0].strides) = __pyx_t_24; - - /* "ml3.pyx":59 - * if prob > probs[i]: - * probs[i] = prob - * parent_dists[i] = dists[l] # <<<<<<<<<<<<<< - * parent_dts[i] = dts[l] - * # probs_fail[i] = failures[l] - */ - __pyx_t_3 = __Pyx_GetItemInt_List(__pyx_v_dists, __pyx_v_l, int, 1, __Pyx_PyInt_From_int, 1, 1, 0); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 59; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_24 = __pyx_PyFloat_AsDouble(__pyx_t_3); if (unlikely((__pyx_t_24 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 59; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_32 = __pyx_v_i; - if (__pyx_t_32 < 0) __pyx_t_32 += __pyx_pybuffernd_parent_dists.diminfo[0].shape; - *__Pyx_BufPtrStrided1d(__pyx_t_3ml3_DTYPE_t *, __pyx_pybuffernd_parent_dists.rcbuffer->pybuffer.buf, __pyx_t_32, __pyx_pybuffernd_parent_dists.diminfo[0].strides) = __pyx_t_24; - - /* "ml3.pyx":60 - * probs[i] = prob - * parent_dists[i] = dists[l] - * parent_dts[i] = dts[l] # <<<<<<<<<<<<<< - * # probs_fail[i] = failures[l] - * - */ - __pyx_t_3 = __Pyx_GetItemInt_List(__pyx_v_dts, __pyx_v_l, int, 1, __Pyx_PyInt_From_int, 1, 1, 0); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 60; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_24 = __pyx_PyFloat_AsDouble(__pyx_t_3); if (unlikely((__pyx_t_24 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 60; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_33 = __pyx_v_i; - if (__pyx_t_33 < 0) __pyx_t_33 += __pyx_pybuffernd_parent_dts.diminfo[0].shape; - *__Pyx_BufPtrStrided1d(__pyx_t_3ml3_DTYPE_t *, __pyx_pybuffernd_parent_dts.rcbuffer->pybuffer.buf, __pyx_t_33, __pyx_pybuffernd_parent_dts.diminfo[0].strides) = __pyx_t_24; - goto __pyx_L23; - } - __pyx_L23:; - - /* "ml3.pyx":55 - * # probs[i] = max(s - failures[l] for l, s in enumerate(successes)) - * probs[i] = float("-inf") - * for l, s in enumerate(successes): # <<<<<<<<<<<<<< - * prob = s - failures[l] - * if prob > probs[i]: - */ - } - __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; - } - __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; - - /* "ml3.pyx":64 - * - * # calculate log likelihood - * ll = probs_fail.sum() # add probability that all edges to all victims fail # <<<<<<<<<<<<<< - * - * # print 'probs', probs - */ - __pyx_t_5 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_probs_fail), __pyx_n_s_sum); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 64; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_5); - __pyx_t_3 = NULL; - if (CYTHON_COMPILING_IN_CPYTHON && likely(PyMethod_Check(__pyx_t_5))) { - __pyx_t_3 = PyMethod_GET_SELF(__pyx_t_5); - if (likely(__pyx_t_3)) { - PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_5); - __Pyx_INCREF(__pyx_t_3); - __Pyx_INCREF(function); - __Pyx_DECREF_SET(__pyx_t_5, function); - } - } - if (__pyx_t_3) { - __pyx_t_6 = __Pyx_PyObject_CallOneArg(__pyx_t_5, __pyx_t_3); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 64; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - } else { - __pyx_t_6 = __Pyx_PyObject_CallNoArg(__pyx_t_5); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 64; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - __Pyx_GOTREF(__pyx_t_6); - __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; - __pyx_t_24 = __pyx_PyFloat_AsDouble(__pyx_t_6); if (unlikely((__pyx_t_24 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 64; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; - __pyx_v_ll = __pyx_t_24; - - /* "ml3.pyx":67 - * - * # print 'probs', probs - * max_beta_add = float('-inf') # <<<<<<<<<<<<<< - * # iterate over all victim nodes to find the optimal threshold - * for beta in np.arange(0.01, 1, .01): - */ - __pyx_t_28 = __Pyx_PyObject_AsDouble(__pyx_kp_s_inf); if (unlikely(__pyx_t_28 == ((double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 67; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_v_max_beta_add = __pyx_t_28; - - /* "ml3.pyx":69 - * max_beta_add = float('-inf') - * # iterate over all victim nodes to find the optimal threshold - * for beta in np.arange(0.01, 1, .01): # <<<<<<<<<<<<<< - * thresh = log(beta/(3012.*(1.-beta))) - * seeds = probs<thresh - */ - __pyx_t_6 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_6); - __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_n_s_arange); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_5); - __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; - __pyx_t_6 = __Pyx_PyObject_Call(__pyx_t_5, __pyx_tuple_, NULL); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_6); - __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; - if (likely(PyList_CheckExact(__pyx_t_6)) || PyTuple_CheckExact(__pyx_t_6)) { - __pyx_t_5 = __pyx_t_6; __Pyx_INCREF(__pyx_t_5); __pyx_t_1 = 0; - __pyx_t_34 = NULL; - } else { - __pyx_t_1 = -1; __pyx_t_5 = PyObject_GetIter(__pyx_t_6); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_5); - __pyx_t_34 = Py_TYPE(__pyx_t_5)->tp_iternext; if (unlikely(!__pyx_t_34)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; - for (;;) { - if (likely(!__pyx_t_34)) { - if (likely(PyList_CheckExact(__pyx_t_5))) { - if (__pyx_t_1 >= PyList_GET_SIZE(__pyx_t_5)) break; - #if CYTHON_COMPILING_IN_CPYTHON - __pyx_t_6 = PyList_GET_ITEM(__pyx_t_5, __pyx_t_1); __Pyx_INCREF(__pyx_t_6); __pyx_t_1++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #else - __pyx_t_6 = PySequence_ITEM(__pyx_t_5, __pyx_t_1); __pyx_t_1++; if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #endif - } else { - if (__pyx_t_1 >= PyTuple_GET_SIZE(__pyx_t_5)) break; - #if CYTHON_COMPILING_IN_CPYTHON - __pyx_t_6 = PyTuple_GET_ITEM(__pyx_t_5, __pyx_t_1); __Pyx_INCREF(__pyx_t_6); __pyx_t_1++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #else - __pyx_t_6 = PySequence_ITEM(__pyx_t_5, __pyx_t_1); __pyx_t_1++; if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #endif - } - } else { - __pyx_t_6 = __pyx_t_34(__pyx_t_5); - if (unlikely(!__pyx_t_6)) { - PyObject* exc_type = PyErr_Occurred(); - if (exc_type) { - if (likely(exc_type == PyExc_StopIteration || PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear(); - else {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - break; - } - __Pyx_GOTREF(__pyx_t_6); - } - __pyx_t_24 = __pyx_PyFloat_AsDouble(__pyx_t_6); if (unlikely((__pyx_t_24 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; - __pyx_v_beta = __pyx_t_24; - - /* "ml3.pyx":70 - * # iterate over all victim nodes to find the optimal threshold - * for beta in np.arange(0.01, 1, .01): - * thresh = log(beta/(3012.*(1.-beta))) # <<<<<<<<<<<<<< - * seeds = probs<thresh - * non_seeds = probs>=thresh - */ - __pyx_v_thresh = log((__pyx_v_beta / (3012. * (1. - __pyx_v_beta)))); - - /* "ml3.pyx":71 - * for beta in np.arange(0.01, 1, .01): - * thresh = log(beta/(3012.*(1.-beta))) - * seeds = probs<thresh # <<<<<<<<<<<<<< - * non_seeds = probs>=thresh - * roots = n_roots + sum(seeds) - */ - __pyx_t_6 = PyFloat_FromDouble(__pyx_v_thresh); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 71; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_6); - __pyx_t_3 = PyObject_RichCompare(((PyObject *)__pyx_v_probs), __pyx_t_6, Py_LT); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 71; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; - __Pyx_XDECREF_SET(__pyx_v_seeds, __pyx_t_3); - __pyx_t_3 = 0; - - /* "ml3.pyx":72 - * thresh = log(beta/(3012.*(1.-beta))) - * seeds = probs<thresh - * non_seeds = probs>=thresh # <<<<<<<<<<<<<< - * roots = n_roots + sum(seeds) - * - */ - __pyx_t_3 = PyFloat_FromDouble(__pyx_v_thresh); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 72; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_6 = PyObject_RichCompare(((PyObject *)__pyx_v_probs), __pyx_t_3, Py_GE); __Pyx_XGOTREF(__pyx_t_6); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 72; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __Pyx_XDECREF_SET(__pyx_v_non_seeds, __pyx_t_6); - __pyx_t_6 = 0; - - /* "ml3.pyx":73 - * seeds = probs<thresh - * non_seeds = probs>=thresh - * roots = n_roots + sum(seeds) # <<<<<<<<<<<<<< - * - * beta_add = 0. - */ - __pyx_t_6 = __Pyx_PyInt_From_int(__pyx_v_n_roots); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 73; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_6); - __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 73; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __Pyx_INCREF(__pyx_v_seeds); - PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_v_seeds); - __Pyx_GIVEREF(__pyx_v_seeds); - __pyx_t_4 = __Pyx_PyObject_Call(__pyx_builtin_sum, __pyx_t_3, NULL); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 73; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_3 = PyNumber_Add(__pyx_t_6, __pyx_t_4); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 73; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __pyx_t_11 = __Pyx_PyInt_As_int(__pyx_t_3); if (unlikely((__pyx_t_11 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 73; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_v_roots = __pyx_t_11; - - /* "ml3.pyx":75 - * roots = n_roots + sum(seeds) - * - * beta_add = 0. # <<<<<<<<<<<<<< - * # add probability for realized edges and subtract probability these edges fail - * beta_add += (probs[non_seeds]).sum() - */ - __pyx_v_beta_add = 0.; - - /* "ml3.pyx":77 - * beta_add = 0. - * # add probability for realized edges and subtract probability these edges fail - * beta_add += (probs[non_seeds]).sum() # <<<<<<<<<<<<<< - * # add probability for the seeds and non-seeds - * beta_add += roots * log(beta/3012.) + sum(non_seeds) * log(1. - beta) - */ - __pyx_t_3 = PyFloat_FromDouble(__pyx_v_beta_add); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 77; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_6 = PyObject_GetItem(((PyObject *)__pyx_v_probs), __pyx_v_non_seeds); if (unlikely(__pyx_t_6 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 77; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; - __Pyx_GOTREF(__pyx_t_6); - __pyx_t_15 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_n_s_sum); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 77; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_15); - __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; - __pyx_t_6 = NULL; - if (CYTHON_COMPILING_IN_CPYTHON && likely(PyMethod_Check(__pyx_t_15))) { - __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_15); - if (likely(__pyx_t_6)) { - PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_15); - __Pyx_INCREF(__pyx_t_6); - __Pyx_INCREF(function); - __Pyx_DECREF_SET(__pyx_t_15, function); - } - } - if (__pyx_t_6) { - __pyx_t_4 = __Pyx_PyObject_CallOneArg(__pyx_t_15, __pyx_t_6); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 77; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; - } else { - __pyx_t_4 = __Pyx_PyObject_CallNoArg(__pyx_t_15); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 77; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - __Pyx_GOTREF(__pyx_t_4); - __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0; - __pyx_t_15 = PyNumber_InPlaceAdd(__pyx_t_3, __pyx_t_4); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 77; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_15); - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __pyx_t_24 = __pyx_PyFloat_AsDouble(__pyx_t_15); if (unlikely((__pyx_t_24 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 77; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0; - __pyx_v_beta_add = __pyx_t_24; - - /* "ml3.pyx":79 - * beta_add += (probs[non_seeds]).sum() - * # add probability for the seeds and non-seeds - * beta_add += roots * log(beta/3012.) + sum(non_seeds) * log(1. - beta) # <<<<<<<<<<<<<< - * - * if beta_add > max_beta_add: - */ - __pyx_t_15 = PyFloat_FromDouble(__pyx_v_beta_add); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 79; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_15); - __pyx_t_4 = PyFloat_FromDouble((__pyx_v_roots * log((__pyx_v_beta / 3012.)))); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 79; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 79; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __Pyx_INCREF(__pyx_v_non_seeds); - PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_v_non_seeds); - __Pyx_GIVEREF(__pyx_v_non_seeds); - __pyx_t_6 = __Pyx_PyObject_Call(__pyx_builtin_sum, __pyx_t_3, NULL); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 79; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_6); - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_3 = PyFloat_FromDouble(log((1. - __pyx_v_beta))); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 79; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_16 = PyNumber_Multiply(__pyx_t_6, __pyx_t_3); if (unlikely(!__pyx_t_16)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 79; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_16); - __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_3 = PyNumber_Add(__pyx_t_4, __pyx_t_16); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 79; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __Pyx_DECREF(__pyx_t_16); __pyx_t_16 = 0; - __pyx_t_16 = PyNumber_InPlaceAdd(__pyx_t_15, __pyx_t_3); if (unlikely(!__pyx_t_16)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 79; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_16); - __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0; - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_24 = __pyx_PyFloat_AsDouble(__pyx_t_16); if (unlikely((__pyx_t_24 == (npy_double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 79; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_16); __pyx_t_16 = 0; - __pyx_v_beta_add = __pyx_t_24; - - /* "ml3.pyx":81 - * beta_add += roots * log(beta/3012.) + sum(non_seeds) * log(1. - beta) - * - * if beta_add > max_beta_add: # <<<<<<<<<<<<<< - * max_beta = beta - * max_roots = roots - */ - __pyx_t_30 = ((__pyx_v_beta_add > __pyx_v_max_beta_add) != 0); - if (__pyx_t_30) { - - /* "ml3.pyx":82 - * - * if beta_add > max_beta_add: - * max_beta = beta # <<<<<<<<<<<<<< - * max_roots = roots - * max_beta_add = beta_add - */ - __pyx_v_max_beta = __pyx_v_beta; - - /* "ml3.pyx":83 - * if beta_add > max_beta_add: - * max_beta = beta - * max_roots = roots # <<<<<<<<<<<<<< - * max_beta_add = beta_add - * # print 'beta:', max_beta, 'add:', max_beta_add, 'roots:', max_roots - */ - __pyx_v_max_roots = __pyx_v_roots; - - /* "ml3.pyx":84 - * max_beta = beta - * max_roots = roots - * max_beta_add = beta_add # <<<<<<<<<<<<<< - * # print 'beta:', max_beta, 'add:', max_beta_add, 'roots:', max_roots - * - */ - __pyx_v_max_beta_add = __pyx_v_beta_add; - goto __pyx_L26; - } - __pyx_L26:; - - /* "ml3.pyx":69 - * max_beta_add = float('-inf') - * # iterate over all victim nodes to find the optimal threshold - * for beta in np.arange(0.01, 1, .01): # <<<<<<<<<<<<<< - * thresh = log(beta/(3012.*(1.-beta))) - * seeds = probs<thresh - */ - } - __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; - - /* "ml3.pyx":87 - * # print 'beta:', max_beta, 'add:', max_beta_add, 'roots:', max_roots - * - * ll += max_beta_add # <<<<<<<<<<<<<< - * roots = max_roots - * beta = max_beta - */ - __pyx_v_ll = (__pyx_v_ll + __pyx_v_max_beta_add); - - /* "ml3.pyx":88 - * - * ll += max_beta_add - * roots = max_roots # <<<<<<<<<<<<<< - * beta = max_beta - * # print n_nodes, n_roots, n_victims, max_i, roots - */ - __pyx_v_roots = __pyx_v_max_roots; - - /* "ml3.pyx":89 - * ll += max_beta_add - * roots = max_roots - * beta = max_beta # <<<<<<<<<<<<<< - * # print n_nodes, n_roots, n_victims, max_i, roots - * return (beta, roots, ll) - */ - __pyx_v_beta = __pyx_v_max_beta; - - /* "ml3.pyx":91 - * beta = max_beta - * # print n_nodes, n_roots, n_victims, max_i, roots - * return (beta, roots, ll) # <<<<<<<<<<<<<< - */ - __Pyx_XDECREF(__pyx_r); - __pyx_t_5 = PyFloat_FromDouble(__pyx_v_beta); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 91; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_5); - __pyx_t_16 = __Pyx_PyInt_From_int(__pyx_v_roots); if (unlikely(!__pyx_t_16)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 91; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_16); - __pyx_t_3 = PyFloat_FromDouble(__pyx_v_ll); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 91; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_15 = PyTuple_New(3); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 91; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_15); - PyTuple_SET_ITEM(__pyx_t_15, 0, __pyx_t_5); - __Pyx_GIVEREF(__pyx_t_5); - PyTuple_SET_ITEM(__pyx_t_15, 1, __pyx_t_16); - __Pyx_GIVEREF(__pyx_t_16); - PyTuple_SET_ITEM(__pyx_t_15, 2, __pyx_t_3); - __Pyx_GIVEREF(__pyx_t_3); - __pyx_t_5 = 0; - __pyx_t_16 = 0; - __pyx_t_3 = 0; - __pyx_r = __pyx_t_15; - __pyx_t_15 = 0; - goto __pyx_L0; - - /* "ml3.pyx":27 - * return result - * - * def ml3(dict root_victims, dict victims, dict non_victims, DTYPE_t age, # <<<<<<<<<<<<<< - * DTYPE_t alpha, DTYPE_t delta): - * cdef: - */ - - /* function exit code */ - __pyx_L1_error:; - __Pyx_XDECREF(__pyx_t_3); - __Pyx_XDECREF(__pyx_t_4); - __Pyx_XDECREF(__pyx_t_5); - __Pyx_XDECREF(__pyx_t_6); - __Pyx_XDECREF(__pyx_t_15); - __Pyx_XDECREF(__pyx_t_16); - __Pyx_XDECREF(__pyx_t_17); - __Pyx_XDECREF(__pyx_t_18); - __Pyx_XDECREF(__pyx_t_19); - __Pyx_XDECREF(__pyx_t_20); - __Pyx_XDECREF(__pyx_t_21); - { PyObject *__pyx_type, *__pyx_value, *__pyx_tb; - __Pyx_ErrFetch(&__pyx_type, &__pyx_value, &__pyx_tb); - __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_parent_dists.rcbuffer->pybuffer); - __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_parent_dts.rcbuffer->pybuffer); - __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_probs.rcbuffer->pybuffer); - __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_probs_fail.rcbuffer->pybuffer); - __Pyx_ErrRestore(__pyx_type, __pyx_value, __pyx_tb);} - __Pyx_AddTraceback("ml3.ml3", __pyx_clineno, __pyx_lineno, __pyx_filename); - __pyx_r = NULL; - goto __pyx_L2; - __pyx_L0:; - __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_parent_dists.rcbuffer->pybuffer); - __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_parent_dts.rcbuffer->pybuffer); - __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_probs.rcbuffer->pybuffer); - __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_probs_fail.rcbuffer->pybuffer); - __pyx_L2:; - __Pyx_XDECREF(__pyx_v_parents); - __Pyx_XDECREF(__pyx_v_failures); - __Pyx_XDECREF(__pyx_v_successes); - __Pyx_XDECREF((PyObject *)__pyx_v_probs); - __Pyx_XDECREF((PyObject *)__pyx_v_probs_fail); - __Pyx_XDECREF((PyObject *)__pyx_v_parent_dists); - __Pyx_XDECREF((PyObject *)__pyx_v_parent_dts); - __Pyx_XDECREF(__pyx_v_dists); - __Pyx_XDECREF(__pyx_v_dts); - __Pyx_XDECREF(__pyx_v_s); - __Pyx_XDECREF(__pyx_v_prob); - __Pyx_XDECREF(__pyx_v_seeds); - __Pyx_XDECREF(__pyx_v_non_seeds); - __Pyx_XDECREF(__pyx_v_prnt); - __Pyx_XDECREF(__pyx_v_w1); - __Pyx_XDECREF(__pyx_v_w2); - __Pyx_XDECREF(__pyx_v_w3); - __Pyx_XGIVEREF(__pyx_r); - __Pyx_RefNannyFinishContext(); - return __pyx_r; -} - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":197 - * # experimental exception made for __getbuffer__ and __releasebuffer__ - * # -- the details of this may change. - * def __getbuffer__(ndarray self, Py_buffer* info, int flags): # <<<<<<<<<<<<<< - * # This implementation of getbuffer is geared towards Cython - * # requirements, and does not yet fullfill the PEP. - */ - -/* Python wrapper */ -static CYTHON_UNUSED int __pyx_pw_5numpy_7ndarray_1__getbuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /*proto*/ -static CYTHON_UNUSED int __pyx_pw_5numpy_7ndarray_1__getbuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags) { - int __pyx_r; - __Pyx_RefNannyDeclarations - __Pyx_RefNannySetupContext("__getbuffer__ (wrapper)", 0); - __pyx_r = __pyx_pf_5numpy_7ndarray___getbuffer__(((PyArrayObject *)__pyx_v_self), ((Py_buffer *)__pyx_v_info), ((int)__pyx_v_flags)); - - /* function exit code */ - __Pyx_RefNannyFinishContext(); - return __pyx_r; -} - -static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags) { - int __pyx_v_copy_shape; - int __pyx_v_i; - int __pyx_v_ndim; - int __pyx_v_endian_detector; - int __pyx_v_little_endian; - int __pyx_v_t; - char *__pyx_v_f; - PyArray_Descr *__pyx_v_descr = 0; - int __pyx_v_offset; - int __pyx_v_hasfields; - int __pyx_r; - __Pyx_RefNannyDeclarations - int __pyx_t_1; - int __pyx_t_2; - PyObject *__pyx_t_3 = NULL; - int __pyx_t_4; - int __pyx_t_5; - PyObject *__pyx_t_6 = NULL; - char *__pyx_t_7; - int __pyx_lineno = 0; - const char *__pyx_filename = NULL; - int __pyx_clineno = 0; - __Pyx_RefNannySetupContext("__getbuffer__", 0); - if (__pyx_v_info != NULL) { - __pyx_v_info->obj = Py_None; __Pyx_INCREF(Py_None); - __Pyx_GIVEREF(__pyx_v_info->obj); - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":203 - * # of flags - * - * if info == NULL: return # <<<<<<<<<<<<<< - * - * cdef int copy_shape, i, ndim - */ - __pyx_t_1 = ((__pyx_v_info == NULL) != 0); - if (__pyx_t_1) { - __pyx_r = 0; - goto __pyx_L0; - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":206 - * - * cdef int copy_shape, i, ndim - * cdef int endian_detector = 1 # <<<<<<<<<<<<<< - * cdef bint little_endian = ((<char*>&endian_detector)[0] != 0) - * - */ - __pyx_v_endian_detector = 1; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":207 - * cdef int copy_shape, i, ndim - * cdef int endian_detector = 1 - * cdef bint little_endian = ((<char*>&endian_detector)[0] != 0) # <<<<<<<<<<<<<< - * - * ndim = PyArray_NDIM(self) - */ - __pyx_v_little_endian = ((((char *)(&__pyx_v_endian_detector))[0]) != 0); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":209 - * cdef bint little_endian = ((<char*>&endian_detector)[0] != 0) - * - * ndim = PyArray_NDIM(self) # <<<<<<<<<<<<<< - * - * if sizeof(npy_intp) != sizeof(Py_ssize_t): - */ - __pyx_v_ndim = PyArray_NDIM(__pyx_v_self); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":211 - * ndim = PyArray_NDIM(self) - * - * if sizeof(npy_intp) != sizeof(Py_ssize_t): # <<<<<<<<<<<<<< - * copy_shape = 1 - * else: - */ - __pyx_t_1 = (((sizeof(npy_intp)) != (sizeof(Py_ssize_t))) != 0); - if (__pyx_t_1) { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":212 - * - * if sizeof(npy_intp) != sizeof(Py_ssize_t): - * copy_shape = 1 # <<<<<<<<<<<<<< - * else: - * copy_shape = 0 - */ - __pyx_v_copy_shape = 1; - goto __pyx_L4; - } - /*else*/ { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":214 - * copy_shape = 1 - * else: - * copy_shape = 0 # <<<<<<<<<<<<<< - * - * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) - */ - __pyx_v_copy_shape = 0; - } - __pyx_L4:; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":216 - * copy_shape = 0 - * - * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) # <<<<<<<<<<<<<< - * and not PyArray_CHKFLAGS(self, NPY_C_CONTIGUOUS)): - * raise ValueError(u"ndarray is not C contiguous") - */ - __pyx_t_2 = (((__pyx_v_flags & PyBUF_C_CONTIGUOUS) == PyBUF_C_CONTIGUOUS) != 0); - if (__pyx_t_2) { - } else { - __pyx_t_1 = __pyx_t_2; - goto __pyx_L6_bool_binop_done; - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":217 - * - * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) - * and not PyArray_CHKFLAGS(self, NPY_C_CONTIGUOUS)): # <<<<<<<<<<<<<< - * raise ValueError(u"ndarray is not C contiguous") - * - */ - __pyx_t_2 = ((!(PyArray_CHKFLAGS(__pyx_v_self, NPY_C_CONTIGUOUS) != 0)) != 0); - __pyx_t_1 = __pyx_t_2; - __pyx_L6_bool_binop_done:; - if (__pyx_t_1) { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":218 - * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) - * and not PyArray_CHKFLAGS(self, NPY_C_CONTIGUOUS)): - * raise ValueError(u"ndarray is not C contiguous") # <<<<<<<<<<<<<< - * - * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) - */ - __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__2, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 218; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __Pyx_Raise(__pyx_t_3, 0, 0, 0); - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - {__pyx_filename = __pyx_f[1]; __pyx_lineno = 218; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":220 - * raise ValueError(u"ndarray is not C contiguous") - * - * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) # <<<<<<<<<<<<<< - * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)): - * raise ValueError(u"ndarray is not Fortran contiguous") - */ - __pyx_t_2 = (((__pyx_v_flags & PyBUF_F_CONTIGUOUS) == PyBUF_F_CONTIGUOUS) != 0); - if (__pyx_t_2) { - } else { - __pyx_t_1 = __pyx_t_2; - goto __pyx_L9_bool_binop_done; - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":221 - * - * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) - * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)): # <<<<<<<<<<<<<< - * raise ValueError(u"ndarray is not Fortran contiguous") - * - */ - __pyx_t_2 = ((!(PyArray_CHKFLAGS(__pyx_v_self, NPY_F_CONTIGUOUS) != 0)) != 0); - __pyx_t_1 = __pyx_t_2; - __pyx_L9_bool_binop_done:; - if (__pyx_t_1) { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":222 - * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) - * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)): - * raise ValueError(u"ndarray is not Fortran contiguous") # <<<<<<<<<<<<<< - * - * info.buf = PyArray_DATA(self) - */ - __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__3, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 222; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __Pyx_Raise(__pyx_t_3, 0, 0, 0); - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - {__pyx_filename = __pyx_f[1]; __pyx_lineno = 222; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":224 - * raise ValueError(u"ndarray is not Fortran contiguous") - * - * info.buf = PyArray_DATA(self) # <<<<<<<<<<<<<< - * info.ndim = ndim - * if copy_shape: - */ - __pyx_v_info->buf = PyArray_DATA(__pyx_v_self); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":225 - * - * info.buf = PyArray_DATA(self) - * info.ndim = ndim # <<<<<<<<<<<<<< - * if copy_shape: - * # Allocate new buffer for strides and shape info. - */ - __pyx_v_info->ndim = __pyx_v_ndim; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":226 - * info.buf = PyArray_DATA(self) - * info.ndim = ndim - * if copy_shape: # <<<<<<<<<<<<<< - * # Allocate new buffer for strides and shape info. - * # This is allocated as one block, strides first. - */ - __pyx_t_1 = (__pyx_v_copy_shape != 0); - if (__pyx_t_1) { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":229 - * # Allocate new buffer for strides and shape info. - * # This is allocated as one block, strides first. - * info.strides = <Py_ssize_t*>stdlib.malloc(sizeof(Py_ssize_t) * <size_t>ndim * 2) # <<<<<<<<<<<<<< - * info.shape = info.strides + ndim - * for i in range(ndim): - */ - __pyx_v_info->strides = ((Py_ssize_t *)malloc((((sizeof(Py_ssize_t)) * ((size_t)__pyx_v_ndim)) * 2))); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":230 - * # This is allocated as one block, strides first. - * info.strides = <Py_ssize_t*>stdlib.malloc(sizeof(Py_ssize_t) * <size_t>ndim * 2) - * info.shape = info.strides + ndim # <<<<<<<<<<<<<< - * for i in range(ndim): - * info.strides[i] = PyArray_STRIDES(self)[i] - */ - __pyx_v_info->shape = (__pyx_v_info->strides + __pyx_v_ndim); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":231 - * info.strides = <Py_ssize_t*>stdlib.malloc(sizeof(Py_ssize_t) * <size_t>ndim * 2) - * info.shape = info.strides + ndim - * for i in range(ndim): # <<<<<<<<<<<<<< - * info.strides[i] = PyArray_STRIDES(self)[i] - * info.shape[i] = PyArray_DIMS(self)[i] - */ - __pyx_t_4 = __pyx_v_ndim; - for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) { - __pyx_v_i = __pyx_t_5; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":232 - * info.shape = info.strides + ndim - * for i in range(ndim): - * info.strides[i] = PyArray_STRIDES(self)[i] # <<<<<<<<<<<<<< - * info.shape[i] = PyArray_DIMS(self)[i] - * else: - */ - (__pyx_v_info->strides[__pyx_v_i]) = (PyArray_STRIDES(__pyx_v_self)[__pyx_v_i]); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":233 - * for i in range(ndim): - * info.strides[i] = PyArray_STRIDES(self)[i] - * info.shape[i] = PyArray_DIMS(self)[i] # <<<<<<<<<<<<<< - * else: - * info.strides = <Py_ssize_t*>PyArray_STRIDES(self) - */ - (__pyx_v_info->shape[__pyx_v_i]) = (PyArray_DIMS(__pyx_v_self)[__pyx_v_i]); - } - goto __pyx_L11; - } - /*else*/ { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":235 - * info.shape[i] = PyArray_DIMS(self)[i] - * else: - * info.strides = <Py_ssize_t*>PyArray_STRIDES(self) # <<<<<<<<<<<<<< - * info.shape = <Py_ssize_t*>PyArray_DIMS(self) - * info.suboffsets = NULL - */ - __pyx_v_info->strides = ((Py_ssize_t *)PyArray_STRIDES(__pyx_v_self)); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":236 - * else: - * info.strides = <Py_ssize_t*>PyArray_STRIDES(self) - * info.shape = <Py_ssize_t*>PyArray_DIMS(self) # <<<<<<<<<<<<<< - * info.suboffsets = NULL - * info.itemsize = PyArray_ITEMSIZE(self) - */ - __pyx_v_info->shape = ((Py_ssize_t *)PyArray_DIMS(__pyx_v_self)); - } - __pyx_L11:; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":237 - * info.strides = <Py_ssize_t*>PyArray_STRIDES(self) - * info.shape = <Py_ssize_t*>PyArray_DIMS(self) - * info.suboffsets = NULL # <<<<<<<<<<<<<< - * info.itemsize = PyArray_ITEMSIZE(self) - * info.readonly = not PyArray_ISWRITEABLE(self) - */ - __pyx_v_info->suboffsets = NULL; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":238 - * info.shape = <Py_ssize_t*>PyArray_DIMS(self) - * info.suboffsets = NULL - * info.itemsize = PyArray_ITEMSIZE(self) # <<<<<<<<<<<<<< - * info.readonly = not PyArray_ISWRITEABLE(self) - * - */ - __pyx_v_info->itemsize = PyArray_ITEMSIZE(__pyx_v_self); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":239 - * info.suboffsets = NULL - * info.itemsize = PyArray_ITEMSIZE(self) - * info.readonly = not PyArray_ISWRITEABLE(self) # <<<<<<<<<<<<<< - * - * cdef int t - */ - __pyx_v_info->readonly = (!(PyArray_ISWRITEABLE(__pyx_v_self) != 0)); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":242 - * - * cdef int t - * cdef char* f = NULL # <<<<<<<<<<<<<< - * cdef dtype descr = self.descr - * cdef list stack - */ - __pyx_v_f = NULL; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":243 - * cdef int t - * cdef char* f = NULL - * cdef dtype descr = self.descr # <<<<<<<<<<<<<< - * cdef list stack - * cdef int offset - */ - __pyx_t_3 = ((PyObject *)__pyx_v_self->descr); - __Pyx_INCREF(__pyx_t_3); - __pyx_v_descr = ((PyArray_Descr *)__pyx_t_3); - __pyx_t_3 = 0; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":247 - * cdef int offset - * - * cdef bint hasfields = PyDataType_HASFIELDS(descr) # <<<<<<<<<<<<<< - * - * if not hasfields and not copy_shape: - */ - __pyx_v_hasfields = PyDataType_HASFIELDS(__pyx_v_descr); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":249 - * cdef bint hasfields = PyDataType_HASFIELDS(descr) - * - * if not hasfields and not copy_shape: # <<<<<<<<<<<<<< - * # do not call releasebuffer - * info.obj = None - */ - __pyx_t_2 = ((!(__pyx_v_hasfields != 0)) != 0); - if (__pyx_t_2) { - } else { - __pyx_t_1 = __pyx_t_2; - goto __pyx_L15_bool_binop_done; - } - __pyx_t_2 = ((!(__pyx_v_copy_shape != 0)) != 0); - __pyx_t_1 = __pyx_t_2; - __pyx_L15_bool_binop_done:; - if (__pyx_t_1) { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":251 - * if not hasfields and not copy_shape: - * # do not call releasebuffer - * info.obj = None # <<<<<<<<<<<<<< - * else: - * # need to call releasebuffer - */ - __Pyx_INCREF(Py_None); - __Pyx_GIVEREF(Py_None); - __Pyx_GOTREF(__pyx_v_info->obj); - __Pyx_DECREF(__pyx_v_info->obj); - __pyx_v_info->obj = Py_None; - goto __pyx_L14; - } - /*else*/ { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":254 - * else: - * # need to call releasebuffer - * info.obj = self # <<<<<<<<<<<<<< - * - * if not hasfields: - */ - __Pyx_INCREF(((PyObject *)__pyx_v_self)); - __Pyx_GIVEREF(((PyObject *)__pyx_v_self)); - __Pyx_GOTREF(__pyx_v_info->obj); - __Pyx_DECREF(__pyx_v_info->obj); - __pyx_v_info->obj = ((PyObject *)__pyx_v_self); - } - __pyx_L14:; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":256 - * info.obj = self - * - * if not hasfields: # <<<<<<<<<<<<<< - * t = descr.type_num - * if ((descr.byteorder == c'>' and little_endian) or - */ - __pyx_t_1 = ((!(__pyx_v_hasfields != 0)) != 0); - if (__pyx_t_1) { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":257 - * - * if not hasfields: - * t = descr.type_num # <<<<<<<<<<<<<< - * if ((descr.byteorder == c'>' and little_endian) or - * (descr.byteorder == c'<' and not little_endian)): - */ - __pyx_t_4 = __pyx_v_descr->type_num; - __pyx_v_t = __pyx_t_4; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":258 - * if not hasfields: - * t = descr.type_num - * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< - * (descr.byteorder == c'<' and not little_endian)): - * raise ValueError(u"Non-native byte order not supported") - */ - __pyx_t_2 = ((__pyx_v_descr->byteorder == '>') != 0); - if (!__pyx_t_2) { - goto __pyx_L20_next_or; - } else { - } - __pyx_t_2 = (__pyx_v_little_endian != 0); - if (!__pyx_t_2) { - } else { - __pyx_t_1 = __pyx_t_2; - goto __pyx_L19_bool_binop_done; - } - __pyx_L20_next_or:; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":259 - * t = descr.type_num - * if ((descr.byteorder == c'>' and little_endian) or - * (descr.byteorder == c'<' and not little_endian)): # <<<<<<<<<<<<<< - * raise ValueError(u"Non-native byte order not supported") - * if t == NPY_BYTE: f = "b" - */ - __pyx_t_2 = ((__pyx_v_descr->byteorder == '<') != 0); - if (__pyx_t_2) { - } else { - __pyx_t_1 = __pyx_t_2; - goto __pyx_L19_bool_binop_done; - } - __pyx_t_2 = ((!(__pyx_v_little_endian != 0)) != 0); - __pyx_t_1 = __pyx_t_2; - __pyx_L19_bool_binop_done:; - if (__pyx_t_1) { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":260 - * if ((descr.byteorder == c'>' and little_endian) or - * (descr.byteorder == c'<' and not little_endian)): - * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<< - * if t == NPY_BYTE: f = "b" - * elif t == NPY_UBYTE: f = "B" - */ - __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__4, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 260; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __Pyx_Raise(__pyx_t_3, 0, 0, 0); - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - {__pyx_filename = __pyx_f[1]; __pyx_lineno = 260; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":277 - * elif t == NPY_CDOUBLE: f = "Zd" - * elif t == NPY_CLONGDOUBLE: f = "Zg" - * elif t == NPY_OBJECT: f = "O" # <<<<<<<<<<<<<< - * else: - * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) - */ - switch (__pyx_v_t) { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":261 - * (descr.byteorder == c'<' and not little_endian)): - * raise ValueError(u"Non-native byte order not supported") - * if t == NPY_BYTE: f = "b" # <<<<<<<<<<<<<< - * elif t == NPY_UBYTE: f = "B" - * elif t == NPY_SHORT: f = "h" - */ - case NPY_BYTE: - __pyx_v_f = __pyx_k_b; - break; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":262 - * raise ValueError(u"Non-native byte order not supported") - * if t == NPY_BYTE: f = "b" - * elif t == NPY_UBYTE: f = "B" # <<<<<<<<<<<<<< - * elif t == NPY_SHORT: f = "h" - * elif t == NPY_USHORT: f = "H" - */ - case NPY_UBYTE: - __pyx_v_f = __pyx_k_B; - break; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":263 - * if t == NPY_BYTE: f = "b" - * elif t == NPY_UBYTE: f = "B" - * elif t == NPY_SHORT: f = "h" # <<<<<<<<<<<<<< - * elif t == NPY_USHORT: f = "H" - * elif t == NPY_INT: f = "i" - */ - case NPY_SHORT: - __pyx_v_f = __pyx_k_h; - break; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":264 - * elif t == NPY_UBYTE: f = "B" - * elif t == NPY_SHORT: f = "h" - * elif t == NPY_USHORT: f = "H" # <<<<<<<<<<<<<< - * elif t == NPY_INT: f = "i" - * elif t == NPY_UINT: f = "I" - */ - case NPY_USHORT: - __pyx_v_f = __pyx_k_H; - break; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":265 - * elif t == NPY_SHORT: f = "h" - * elif t == NPY_USHORT: f = "H" - * elif t == NPY_INT: f = "i" # <<<<<<<<<<<<<< - * elif t == NPY_UINT: f = "I" - * elif t == NPY_LONG: f = "l" - */ - case NPY_INT: - __pyx_v_f = __pyx_k_i; - break; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":266 - * elif t == NPY_USHORT: f = "H" - * elif t == NPY_INT: f = "i" - * elif t == NPY_UINT: f = "I" # <<<<<<<<<<<<<< - * elif t == NPY_LONG: f = "l" - * elif t == NPY_ULONG: f = "L" - */ - case NPY_UINT: - __pyx_v_f = __pyx_k_I; - break; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":267 - * elif t == NPY_INT: f = "i" - * elif t == NPY_UINT: f = "I" - * elif t == NPY_LONG: f = "l" # <<<<<<<<<<<<<< - * elif t == NPY_ULONG: f = "L" - * elif t == NPY_LONGLONG: f = "q" - */ - case NPY_LONG: - __pyx_v_f = __pyx_k_l; - break; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":268 - * elif t == NPY_UINT: f = "I" - * elif t == NPY_LONG: f = "l" - * elif t == NPY_ULONG: f = "L" # <<<<<<<<<<<<<< - * elif t == NPY_LONGLONG: f = "q" - * elif t == NPY_ULONGLONG: f = "Q" - */ - case NPY_ULONG: - __pyx_v_f = __pyx_k_L; - break; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":269 - * elif t == NPY_LONG: f = "l" - * elif t == NPY_ULONG: f = "L" - * elif t == NPY_LONGLONG: f = "q" # <<<<<<<<<<<<<< - * elif t == NPY_ULONGLONG: f = "Q" - * elif t == NPY_FLOAT: f = "f" - */ - case NPY_LONGLONG: - __pyx_v_f = __pyx_k_q; - break; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":270 - * elif t == NPY_ULONG: f = "L" - * elif t == NPY_LONGLONG: f = "q" - * elif t == NPY_ULONGLONG: f = "Q" # <<<<<<<<<<<<<< - * elif t == NPY_FLOAT: f = "f" - * elif t == NPY_DOUBLE: f = "d" - */ - case NPY_ULONGLONG: - __pyx_v_f = __pyx_k_Q; - break; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":271 - * elif t == NPY_LONGLONG: f = "q" - * elif t == NPY_ULONGLONG: f = "Q" - * elif t == NPY_FLOAT: f = "f" # <<<<<<<<<<<<<< - * elif t == NPY_DOUBLE: f = "d" - * elif t == NPY_LONGDOUBLE: f = "g" - */ - case NPY_FLOAT: - __pyx_v_f = __pyx_k_f; - break; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":272 - * elif t == NPY_ULONGLONG: f = "Q" - * elif t == NPY_FLOAT: f = "f" - * elif t == NPY_DOUBLE: f = "d" # <<<<<<<<<<<<<< - * elif t == NPY_LONGDOUBLE: f = "g" - * elif t == NPY_CFLOAT: f = "Zf" - */ - case NPY_DOUBLE: - __pyx_v_f = __pyx_k_d; - break; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":273 - * elif t == NPY_FLOAT: f = "f" - * elif t == NPY_DOUBLE: f = "d" - * elif t == NPY_LONGDOUBLE: f = "g" # <<<<<<<<<<<<<< - * elif t == NPY_CFLOAT: f = "Zf" - * elif t == NPY_CDOUBLE: f = "Zd" - */ - case NPY_LONGDOUBLE: - __pyx_v_f = __pyx_k_g; - break; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":274 - * elif t == NPY_DOUBLE: f = "d" - * elif t == NPY_LONGDOUBLE: f = "g" - * elif t == NPY_CFLOAT: f = "Zf" # <<<<<<<<<<<<<< - * elif t == NPY_CDOUBLE: f = "Zd" - * elif t == NPY_CLONGDOUBLE: f = "Zg" - */ - case NPY_CFLOAT: - __pyx_v_f = __pyx_k_Zf; - break; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":275 - * elif t == NPY_LONGDOUBLE: f = "g" - * elif t == NPY_CFLOAT: f = "Zf" - * elif t == NPY_CDOUBLE: f = "Zd" # <<<<<<<<<<<<<< - * elif t == NPY_CLONGDOUBLE: f = "Zg" - * elif t == NPY_OBJECT: f = "O" - */ - case NPY_CDOUBLE: - __pyx_v_f = __pyx_k_Zd; - break; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":276 - * elif t == NPY_CFLOAT: f = "Zf" - * elif t == NPY_CDOUBLE: f = "Zd" - * elif t == NPY_CLONGDOUBLE: f = "Zg" # <<<<<<<<<<<<<< - * elif t == NPY_OBJECT: f = "O" - * else: - */ - case NPY_CLONGDOUBLE: - __pyx_v_f = __pyx_k_Zg; - break; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":277 - * elif t == NPY_CDOUBLE: f = "Zd" - * elif t == NPY_CLONGDOUBLE: f = "Zg" - * elif t == NPY_OBJECT: f = "O" # <<<<<<<<<<<<<< - * else: - * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) - */ - case NPY_OBJECT: - __pyx_v_f = __pyx_k_O; - break; - default: - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":279 - * elif t == NPY_OBJECT: f = "O" - * else: - * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) # <<<<<<<<<<<<<< - * info.format = f - * return - */ - __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_t); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 279; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_6 = PyUnicode_Format(__pyx_kp_u_unknown_dtype_code_in_numpy_pxd, __pyx_t_3); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 279; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_6); - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 279; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_6); - __Pyx_GIVEREF(__pyx_t_6); - __pyx_t_6 = 0; - __pyx_t_6 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_t_3, NULL); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 279; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_6); - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __Pyx_Raise(__pyx_t_6, 0, 0, 0); - __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; - {__pyx_filename = __pyx_f[1]; __pyx_lineno = 279; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - break; - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":280 - * else: - * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) - * info.format = f # <<<<<<<<<<<<<< - * return - * else: - */ - __pyx_v_info->format = __pyx_v_f; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":281 - * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) - * info.format = f - * return # <<<<<<<<<<<<<< - * else: - * info.format = <char*>stdlib.malloc(_buffer_format_string_len) - */ - __pyx_r = 0; - goto __pyx_L0; - } - /*else*/ { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":283 - * return - * else: - * info.format = <char*>stdlib.malloc(_buffer_format_string_len) # <<<<<<<<<<<<<< - * info.format[0] = c'^' # Native data types, manual alignment - * offset = 0 - */ - __pyx_v_info->format = ((char *)malloc(255)); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":284 - * else: - * info.format = <char*>stdlib.malloc(_buffer_format_string_len) - * info.format[0] = c'^' # Native data types, manual alignment # <<<<<<<<<<<<<< - * offset = 0 - * f = _util_dtypestring(descr, info.format + 1, - */ - (__pyx_v_info->format[0]) = '^'; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":285 - * info.format = <char*>stdlib.malloc(_buffer_format_string_len) - * info.format[0] = c'^' # Native data types, manual alignment - * offset = 0 # <<<<<<<<<<<<<< - * f = _util_dtypestring(descr, info.format + 1, - * info.format + _buffer_format_string_len, - */ - __pyx_v_offset = 0; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":286 - * info.format[0] = c'^' # Native data types, manual alignment - * offset = 0 - * f = _util_dtypestring(descr, info.format + 1, # <<<<<<<<<<<<<< - * info.format + _buffer_format_string_len, - * &offset) - */ - __pyx_t_7 = __pyx_f_5numpy__util_dtypestring(__pyx_v_descr, (__pyx_v_info->format + 1), (__pyx_v_info->format + 255), (&__pyx_v_offset)); if (unlikely(__pyx_t_7 == NULL)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 286; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_v_f = __pyx_t_7; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":289 - * info.format + _buffer_format_string_len, - * &offset) - * f[0] = c'\0' # Terminate format string # <<<<<<<<<<<<<< - * - * def __releasebuffer__(ndarray self, Py_buffer* info): - */ - (__pyx_v_f[0]) = '\x00'; - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":197 - * # experimental exception made for __getbuffer__ and __releasebuffer__ - * # -- the details of this may change. - * def __getbuffer__(ndarray self, Py_buffer* info, int flags): # <<<<<<<<<<<<<< - * # This implementation of getbuffer is geared towards Cython - * # requirements, and does not yet fullfill the PEP. - */ - - /* function exit code */ - __pyx_r = 0; - goto __pyx_L0; - __pyx_L1_error:; - __Pyx_XDECREF(__pyx_t_3); - __Pyx_XDECREF(__pyx_t_6); - __Pyx_AddTraceback("numpy.ndarray.__getbuffer__", __pyx_clineno, __pyx_lineno, __pyx_filename); - __pyx_r = -1; - if (__pyx_v_info != NULL && __pyx_v_info->obj != NULL) { - __Pyx_GOTREF(__pyx_v_info->obj); - __Pyx_DECREF(__pyx_v_info->obj); __pyx_v_info->obj = NULL; - } - goto __pyx_L2; - __pyx_L0:; - if (__pyx_v_info != NULL && __pyx_v_info->obj == Py_None) { - __Pyx_GOTREF(Py_None); - __Pyx_DECREF(Py_None); __pyx_v_info->obj = NULL; - } - __pyx_L2:; - __Pyx_XDECREF((PyObject *)__pyx_v_descr); - __Pyx_RefNannyFinishContext(); - return __pyx_r; -} - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":291 - * f[0] = c'\0' # Terminate format string - * - * def __releasebuffer__(ndarray self, Py_buffer* info): # <<<<<<<<<<<<<< - * if PyArray_HASFIELDS(self): - * stdlib.free(info.format) - */ - -/* Python wrapper */ -static CYTHON_UNUSED void __pyx_pw_5numpy_7ndarray_3__releasebuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info); /*proto*/ -static CYTHON_UNUSED void __pyx_pw_5numpy_7ndarray_3__releasebuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info) { - __Pyx_RefNannyDeclarations - __Pyx_RefNannySetupContext("__releasebuffer__ (wrapper)", 0); - __pyx_pf_5numpy_7ndarray_2__releasebuffer__(((PyArrayObject *)__pyx_v_self), ((Py_buffer *)__pyx_v_info)); - - /* function exit code */ - __Pyx_RefNannyFinishContext(); -} - -static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info) { - __Pyx_RefNannyDeclarations - int __pyx_t_1; - __Pyx_RefNannySetupContext("__releasebuffer__", 0); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":292 - * - * def __releasebuffer__(ndarray self, Py_buffer* info): - * if PyArray_HASFIELDS(self): # <<<<<<<<<<<<<< - * stdlib.free(info.format) - * if sizeof(npy_intp) != sizeof(Py_ssize_t): - */ - __pyx_t_1 = (PyArray_HASFIELDS(__pyx_v_self) != 0); - if (__pyx_t_1) { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":293 - * def __releasebuffer__(ndarray self, Py_buffer* info): - * if PyArray_HASFIELDS(self): - * stdlib.free(info.format) # <<<<<<<<<<<<<< - * if sizeof(npy_intp) != sizeof(Py_ssize_t): - * stdlib.free(info.strides) - */ - free(__pyx_v_info->format); - goto __pyx_L3; - } - __pyx_L3:; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":294 - * if PyArray_HASFIELDS(self): - * stdlib.free(info.format) - * if sizeof(npy_intp) != sizeof(Py_ssize_t): # <<<<<<<<<<<<<< - * stdlib.free(info.strides) - * # info.shape was stored after info.strides in the same block - */ - __pyx_t_1 = (((sizeof(npy_intp)) != (sizeof(Py_ssize_t))) != 0); - if (__pyx_t_1) { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":295 - * stdlib.free(info.format) - * if sizeof(npy_intp) != sizeof(Py_ssize_t): - * stdlib.free(info.strides) # <<<<<<<<<<<<<< - * # info.shape was stored after info.strides in the same block - * - */ - free(__pyx_v_info->strides); - goto __pyx_L4; - } - __pyx_L4:; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":291 - * f[0] = c'\0' # Terminate format string - * - * def __releasebuffer__(ndarray self, Py_buffer* info): # <<<<<<<<<<<<<< - * if PyArray_HASFIELDS(self): - * stdlib.free(info.format) - */ - - /* function exit code */ - __Pyx_RefNannyFinishContext(); -} - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":771 - * ctypedef npy_cdouble complex_t - * - * cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<< - * return PyArray_MultiIterNew(1, <void*>a) - * - */ - -static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__pyx_v_a) { - PyObject *__pyx_r = NULL; - __Pyx_RefNannyDeclarations - PyObject *__pyx_t_1 = NULL; - int __pyx_lineno = 0; - const char *__pyx_filename = NULL; - int __pyx_clineno = 0; - __Pyx_RefNannySetupContext("PyArray_MultiIterNew1", 0); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":772 - * - * cdef inline object PyArray_MultiIterNew1(a): - * return PyArray_MultiIterNew(1, <void*>a) # <<<<<<<<<<<<<< - * - * cdef inline object PyArray_MultiIterNew2(a, b): - */ - __Pyx_XDECREF(__pyx_r); - __pyx_t_1 = PyArray_MultiIterNew(1, ((void *)__pyx_v_a)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 772; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_1); - __pyx_r = __pyx_t_1; - __pyx_t_1 = 0; - goto __pyx_L0; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":771 - * ctypedef npy_cdouble complex_t - * - * cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<< - * return PyArray_MultiIterNew(1, <void*>a) - * - */ - - /* function exit code */ - __pyx_L1_error:; - __Pyx_XDECREF(__pyx_t_1); - __Pyx_AddTraceback("numpy.PyArray_MultiIterNew1", __pyx_clineno, __pyx_lineno, __pyx_filename); - __pyx_r = 0; - __pyx_L0:; - __Pyx_XGIVEREF(__pyx_r); - __Pyx_RefNannyFinishContext(); - return __pyx_r; -} - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":774 - * return PyArray_MultiIterNew(1, <void*>a) - * - * cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<< - * return PyArray_MultiIterNew(2, <void*>a, <void*>b) - * - */ - -static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__pyx_v_a, PyObject *__pyx_v_b) { - PyObject *__pyx_r = NULL; - __Pyx_RefNannyDeclarations - PyObject *__pyx_t_1 = NULL; - int __pyx_lineno = 0; - const char *__pyx_filename = NULL; - int __pyx_clineno = 0; - __Pyx_RefNannySetupContext("PyArray_MultiIterNew2", 0); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":775 - * - * cdef inline object PyArray_MultiIterNew2(a, b): - * return PyArray_MultiIterNew(2, <void*>a, <void*>b) # <<<<<<<<<<<<<< - * - * cdef inline object PyArray_MultiIterNew3(a, b, c): - */ - __Pyx_XDECREF(__pyx_r); - __pyx_t_1 = PyArray_MultiIterNew(2, ((void *)__pyx_v_a), ((void *)__pyx_v_b)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 775; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_1); - __pyx_r = __pyx_t_1; - __pyx_t_1 = 0; - goto __pyx_L0; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":774 - * return PyArray_MultiIterNew(1, <void*>a) - * - * cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<< - * return PyArray_MultiIterNew(2, <void*>a, <void*>b) - * - */ - - /* function exit code */ - __pyx_L1_error:; - __Pyx_XDECREF(__pyx_t_1); - __Pyx_AddTraceback("numpy.PyArray_MultiIterNew2", __pyx_clineno, __pyx_lineno, __pyx_filename); - __pyx_r = 0; - __pyx_L0:; - __Pyx_XGIVEREF(__pyx_r); - __Pyx_RefNannyFinishContext(); - return __pyx_r; -} - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":777 - * return PyArray_MultiIterNew(2, <void*>a, <void*>b) - * - * cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<< - * return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c) - * - */ - -static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__pyx_v_a, PyObject *__pyx_v_b, PyObject *__pyx_v_c) { - PyObject *__pyx_r = NULL; - __Pyx_RefNannyDeclarations - PyObject *__pyx_t_1 = NULL; - int __pyx_lineno = 0; - const char *__pyx_filename = NULL; - int __pyx_clineno = 0; - __Pyx_RefNannySetupContext("PyArray_MultiIterNew3", 0); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":778 - * - * cdef inline object PyArray_MultiIterNew3(a, b, c): - * return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c) # <<<<<<<<<<<<<< - * - * cdef inline object PyArray_MultiIterNew4(a, b, c, d): - */ - __Pyx_XDECREF(__pyx_r); - __pyx_t_1 = PyArray_MultiIterNew(3, ((void *)__pyx_v_a), ((void *)__pyx_v_b), ((void *)__pyx_v_c)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 778; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_1); - __pyx_r = __pyx_t_1; - __pyx_t_1 = 0; - goto __pyx_L0; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":777 - * return PyArray_MultiIterNew(2, <void*>a, <void*>b) - * - * cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<< - * return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c) - * - */ - - /* function exit code */ - __pyx_L1_error:; - __Pyx_XDECREF(__pyx_t_1); - __Pyx_AddTraceback("numpy.PyArray_MultiIterNew3", __pyx_clineno, __pyx_lineno, __pyx_filename); - __pyx_r = 0; - __pyx_L0:; - __Pyx_XGIVEREF(__pyx_r); - __Pyx_RefNannyFinishContext(); - return __pyx_r; -} - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":780 - * return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c) - * - * cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<< - * return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d) - * - */ - -static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__pyx_v_a, PyObject *__pyx_v_b, PyObject *__pyx_v_c, PyObject *__pyx_v_d) { - PyObject *__pyx_r = NULL; - __Pyx_RefNannyDeclarations - PyObject *__pyx_t_1 = NULL; - int __pyx_lineno = 0; - const char *__pyx_filename = NULL; - int __pyx_clineno = 0; - __Pyx_RefNannySetupContext("PyArray_MultiIterNew4", 0); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":781 - * - * cdef inline object PyArray_MultiIterNew4(a, b, c, d): - * return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d) # <<<<<<<<<<<<<< - * - * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): - */ - __Pyx_XDECREF(__pyx_r); - __pyx_t_1 = PyArray_MultiIterNew(4, ((void *)__pyx_v_a), ((void *)__pyx_v_b), ((void *)__pyx_v_c), ((void *)__pyx_v_d)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 781; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_1); - __pyx_r = __pyx_t_1; - __pyx_t_1 = 0; - goto __pyx_L0; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":780 - * return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c) - * - * cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<< - * return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d) - * - */ - - /* function exit code */ - __pyx_L1_error:; - __Pyx_XDECREF(__pyx_t_1); - __Pyx_AddTraceback("numpy.PyArray_MultiIterNew4", __pyx_clineno, __pyx_lineno, __pyx_filename); - __pyx_r = 0; - __pyx_L0:; - __Pyx_XGIVEREF(__pyx_r); - __Pyx_RefNannyFinishContext(); - return __pyx_r; -} - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":783 - * return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d) - * - * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<< - * return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e) - * - */ - -static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__pyx_v_a, PyObject *__pyx_v_b, PyObject *__pyx_v_c, PyObject *__pyx_v_d, PyObject *__pyx_v_e) { - PyObject *__pyx_r = NULL; - __Pyx_RefNannyDeclarations - PyObject *__pyx_t_1 = NULL; - int __pyx_lineno = 0; - const char *__pyx_filename = NULL; - int __pyx_clineno = 0; - __Pyx_RefNannySetupContext("PyArray_MultiIterNew5", 0); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":784 - * - * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): - * return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e) # <<<<<<<<<<<<<< - * - * cdef inline char* _util_dtypestring(dtype descr, char* f, char* end, int* offset) except NULL: - */ - __Pyx_XDECREF(__pyx_r); - __pyx_t_1 = PyArray_MultiIterNew(5, ((void *)__pyx_v_a), ((void *)__pyx_v_b), ((void *)__pyx_v_c), ((void *)__pyx_v_d), ((void *)__pyx_v_e)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 784; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_1); - __pyx_r = __pyx_t_1; - __pyx_t_1 = 0; - goto __pyx_L0; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":783 - * return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d) - * - * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<< - * return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e) - * - */ - - /* function exit code */ - __pyx_L1_error:; - __Pyx_XDECREF(__pyx_t_1); - __Pyx_AddTraceback("numpy.PyArray_MultiIterNew5", __pyx_clineno, __pyx_lineno, __pyx_filename); - __pyx_r = 0; - __pyx_L0:; - __Pyx_XGIVEREF(__pyx_r); - __Pyx_RefNannyFinishContext(); - return __pyx_r; -} - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":786 - * return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e) - * - * cdef inline char* _util_dtypestring(dtype descr, char* f, char* end, int* offset) except NULL: # <<<<<<<<<<<<<< - * # Recursive utility function used in __getbuffer__ to get format - * # string. The new location in the format string is returned. - */ - -static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *__pyx_v_descr, char *__pyx_v_f, char *__pyx_v_end, int *__pyx_v_offset) { - PyArray_Descr *__pyx_v_child = 0; - int __pyx_v_endian_detector; - int __pyx_v_little_endian; - PyObject *__pyx_v_fields = 0; - PyObject *__pyx_v_childname = NULL; - PyObject *__pyx_v_new_offset = NULL; - PyObject *__pyx_v_t = NULL; - char *__pyx_r; - __Pyx_RefNannyDeclarations - PyObject *__pyx_t_1 = NULL; - Py_ssize_t __pyx_t_2; - PyObject *__pyx_t_3 = NULL; - PyObject *__pyx_t_4 = NULL; - int __pyx_t_5; - int __pyx_t_6; - int __pyx_t_7; - long __pyx_t_8; - char *__pyx_t_9; - int __pyx_lineno = 0; - const char *__pyx_filename = NULL; - int __pyx_clineno = 0; - __Pyx_RefNannySetupContext("_util_dtypestring", 0); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":793 - * cdef int delta_offset - * cdef tuple i - * cdef int endian_detector = 1 # <<<<<<<<<<<<<< - * cdef bint little_endian = ((<char*>&endian_detector)[0] != 0) - * cdef tuple fields - */ - __pyx_v_endian_detector = 1; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":794 - * cdef tuple i - * cdef int endian_detector = 1 - * cdef bint little_endian = ((<char*>&endian_detector)[0] != 0) # <<<<<<<<<<<<<< - * cdef tuple fields - * - */ - __pyx_v_little_endian = ((((char *)(&__pyx_v_endian_detector))[0]) != 0); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":797 - * cdef tuple fields - * - * for childname in descr.names: # <<<<<<<<<<<<<< - * fields = descr.fields[childname] - * child, new_offset = fields - */ - if (unlikely(__pyx_v_descr->names == Py_None)) { - PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); - {__pyx_filename = __pyx_f[1]; __pyx_lineno = 797; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - __pyx_t_1 = __pyx_v_descr->names; __Pyx_INCREF(__pyx_t_1); __pyx_t_2 = 0; - for (;;) { - if (__pyx_t_2 >= PyTuple_GET_SIZE(__pyx_t_1)) break; - #if CYTHON_COMPILING_IN_CPYTHON - __pyx_t_3 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_3); __pyx_t_2++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 797; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #else - __pyx_t_3 = PySequence_ITEM(__pyx_t_1, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 797; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #endif - __Pyx_XDECREF_SET(__pyx_v_childname, __pyx_t_3); - __pyx_t_3 = 0; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":798 - * - * for childname in descr.names: - * fields = descr.fields[childname] # <<<<<<<<<<<<<< - * child, new_offset = fields - * - */ - if (unlikely(__pyx_v_descr->fields == Py_None)) { - PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable"); - {__pyx_filename = __pyx_f[1]; __pyx_lineno = 798; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - __pyx_t_3 = __Pyx_PyDict_GetItem(__pyx_v_descr->fields, __pyx_v_childname); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 798; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; - __Pyx_GOTREF(__pyx_t_3); - if (!(likely(PyTuple_CheckExact(__pyx_t_3))||((__pyx_t_3) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "tuple", Py_TYPE(__pyx_t_3)->tp_name), 0))) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 798; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_XDECREF_SET(__pyx_v_fields, ((PyObject*)__pyx_t_3)); - __pyx_t_3 = 0; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":799 - * for childname in descr.names: - * fields = descr.fields[childname] - * child, new_offset = fields # <<<<<<<<<<<<<< - * - * if (end - f) - <int>(new_offset - offset[0]) < 15: - */ - if (likely(__pyx_v_fields != Py_None)) { - PyObject* sequence = __pyx_v_fields; - #if CYTHON_COMPILING_IN_CPYTHON - Py_ssize_t size = Py_SIZE(sequence); - #else - Py_ssize_t size = PySequence_Size(sequence); - #endif - if (unlikely(size != 2)) { - if (size > 2) __Pyx_RaiseTooManyValuesError(2); - else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size); - {__pyx_filename = __pyx_f[1]; __pyx_lineno = 799; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - #if CYTHON_COMPILING_IN_CPYTHON - __pyx_t_3 = PyTuple_GET_ITEM(sequence, 0); - __pyx_t_4 = PyTuple_GET_ITEM(sequence, 1); - __Pyx_INCREF(__pyx_t_3); - __Pyx_INCREF(__pyx_t_4); - #else - __pyx_t_3 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 799; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_4 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 799; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - #endif - } else { - __Pyx_RaiseNoneNotIterableError(); {__pyx_filename = __pyx_f[1]; __pyx_lineno = 799; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - if (!(likely(((__pyx_t_3) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_3, __pyx_ptype_5numpy_dtype))))) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 799; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_XDECREF_SET(__pyx_v_child, ((PyArray_Descr *)__pyx_t_3)); - __pyx_t_3 = 0; - __Pyx_XDECREF_SET(__pyx_v_new_offset, __pyx_t_4); - __pyx_t_4 = 0; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":801 - * child, new_offset = fields - * - * if (end - f) - <int>(new_offset - offset[0]) < 15: # <<<<<<<<<<<<<< - * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") - * - */ - __pyx_t_4 = __Pyx_PyInt_From_int((__pyx_v_offset[0])); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 801; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __pyx_t_3 = PyNumber_Subtract(__pyx_v_new_offset, __pyx_t_4); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 801; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __pyx_t_5 = __Pyx_PyInt_As_int(__pyx_t_3); if (unlikely((__pyx_t_5 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 801; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_6 = ((((__pyx_v_end - __pyx_v_f) - ((int)__pyx_t_5)) < 15) != 0); - if (__pyx_t_6) { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":802 - * - * if (end - f) - <int>(new_offset - offset[0]) < 15: - * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") # <<<<<<<<<<<<<< - * - * if ((child.byteorder == c'>' and little_endian) or - */ - __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_RuntimeError, __pyx_tuple__5, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 802; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __Pyx_Raise(__pyx_t_3, 0, 0, 0); - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - {__pyx_filename = __pyx_f[1]; __pyx_lineno = 802; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":804 - * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") - * - * if ((child.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< - * (child.byteorder == c'<' and not little_endian)): - * raise ValueError(u"Non-native byte order not supported") - */ - __pyx_t_7 = ((__pyx_v_child->byteorder == '>') != 0); - if (!__pyx_t_7) { - goto __pyx_L8_next_or; - } else { - } - __pyx_t_7 = (__pyx_v_little_endian != 0); - if (!__pyx_t_7) { - } else { - __pyx_t_6 = __pyx_t_7; - goto __pyx_L7_bool_binop_done; - } - __pyx_L8_next_or:; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":805 - * - * if ((child.byteorder == c'>' and little_endian) or - * (child.byteorder == c'<' and not little_endian)): # <<<<<<<<<<<<<< - * raise ValueError(u"Non-native byte order not supported") - * # One could encode it in the format string and have Cython - */ - __pyx_t_7 = ((__pyx_v_child->byteorder == '<') != 0); - if (__pyx_t_7) { - } else { - __pyx_t_6 = __pyx_t_7; - goto __pyx_L7_bool_binop_done; - } - __pyx_t_7 = ((!(__pyx_v_little_endian != 0)) != 0); - __pyx_t_6 = __pyx_t_7; - __pyx_L7_bool_binop_done:; - if (__pyx_t_6) { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":806 - * if ((child.byteorder == c'>' and little_endian) or - * (child.byteorder == c'<' and not little_endian)): - * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<< - * # One could encode it in the format string and have Cython - * # complain instead, BUT: < and > in format strings also imply - */ - __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__6, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 806; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __Pyx_Raise(__pyx_t_3, 0, 0, 0); - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - {__pyx_filename = __pyx_f[1]; __pyx_lineno = 806; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":816 - * - * # Output padding bytes - * while offset[0] < new_offset: # <<<<<<<<<<<<<< - * f[0] = 120 # "x"; pad byte - * f += 1 - */ - while (1) { - __pyx_t_3 = __Pyx_PyInt_From_int((__pyx_v_offset[0])); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 816; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_4 = PyObject_RichCompare(__pyx_t_3, __pyx_v_new_offset, Py_LT); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 816; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 816; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - if (!__pyx_t_6) break; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":817 - * # Output padding bytes - * while offset[0] < new_offset: - * f[0] = 120 # "x"; pad byte # <<<<<<<<<<<<<< - * f += 1 - * offset[0] += 1 - */ - (__pyx_v_f[0]) = 120; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":818 - * while offset[0] < new_offset: - * f[0] = 120 # "x"; pad byte - * f += 1 # <<<<<<<<<<<<<< - * offset[0] += 1 - * - */ - __pyx_v_f = (__pyx_v_f + 1); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":819 - * f[0] = 120 # "x"; pad byte - * f += 1 - * offset[0] += 1 # <<<<<<<<<<<<<< - * - * offset[0] += child.itemsize - */ - __pyx_t_8 = 0; - (__pyx_v_offset[__pyx_t_8]) = ((__pyx_v_offset[__pyx_t_8]) + 1); - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":821 - * offset[0] += 1 - * - * offset[0] += child.itemsize # <<<<<<<<<<<<<< - * - * if not PyDataType_HASFIELDS(child): - */ - __pyx_t_8 = 0; - (__pyx_v_offset[__pyx_t_8]) = ((__pyx_v_offset[__pyx_t_8]) + __pyx_v_child->elsize); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":823 - * offset[0] += child.itemsize - * - * if not PyDataType_HASFIELDS(child): # <<<<<<<<<<<<<< - * t = child.type_num - * if end - f < 5: - */ - __pyx_t_6 = ((!(PyDataType_HASFIELDS(__pyx_v_child) != 0)) != 0); - if (__pyx_t_6) { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":824 - * - * if not PyDataType_HASFIELDS(child): - * t = child.type_num # <<<<<<<<<<<<<< - * if end - f < 5: - * raise RuntimeError(u"Format string allocated too short.") - */ - __pyx_t_4 = __Pyx_PyInt_From_int(__pyx_v_child->type_num); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 824; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __Pyx_XDECREF_SET(__pyx_v_t, __pyx_t_4); - __pyx_t_4 = 0; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":825 - * if not PyDataType_HASFIELDS(child): - * t = child.type_num - * if end - f < 5: # <<<<<<<<<<<<<< - * raise RuntimeError(u"Format string allocated too short.") - * - */ - __pyx_t_6 = (((__pyx_v_end - __pyx_v_f) < 5) != 0); - if (__pyx_t_6) { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":826 - * t = child.type_num - * if end - f < 5: - * raise RuntimeError(u"Format string allocated too short.") # <<<<<<<<<<<<<< - * - * # Until ticket #99 is fixed, use integers to avoid warnings - */ - __pyx_t_4 = __Pyx_PyObject_Call(__pyx_builtin_RuntimeError, __pyx_tuple__7, NULL); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 826; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __Pyx_Raise(__pyx_t_4, 0, 0, 0); - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - {__pyx_filename = __pyx_f[1]; __pyx_lineno = 826; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":829 - * - * # Until ticket #99 is fixed, use integers to avoid warnings - * if t == NPY_BYTE: f[0] = 98 #"b" # <<<<<<<<<<<<<< - * elif t == NPY_UBYTE: f[0] = 66 #"B" - * elif t == NPY_SHORT: f[0] = 104 #"h" - */ - __pyx_t_4 = PyInt_FromLong(NPY_BYTE); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 829; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __pyx_t_3 = PyObject_RichCompare(__pyx_v_t, __pyx_t_4, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 829; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 829; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - if (__pyx_t_6) { - (__pyx_v_f[0]) = 98; - goto __pyx_L15; - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":830 - * # Until ticket #99 is fixed, use integers to avoid warnings - * if t == NPY_BYTE: f[0] = 98 #"b" - * elif t == NPY_UBYTE: f[0] = 66 #"B" # <<<<<<<<<<<<<< - * elif t == NPY_SHORT: f[0] = 104 #"h" - * elif t == NPY_USHORT: f[0] = 72 #"H" - */ - __pyx_t_3 = PyInt_FromLong(NPY_UBYTE); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 830; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_4 = PyObject_RichCompare(__pyx_v_t, __pyx_t_3, Py_EQ); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 830; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 830; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - if (__pyx_t_6) { - (__pyx_v_f[0]) = 66; - goto __pyx_L15; - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":831 - * if t == NPY_BYTE: f[0] = 98 #"b" - * elif t == NPY_UBYTE: f[0] = 66 #"B" - * elif t == NPY_SHORT: f[0] = 104 #"h" # <<<<<<<<<<<<<< - * elif t == NPY_USHORT: f[0] = 72 #"H" - * elif t == NPY_INT: f[0] = 105 #"i" - */ - __pyx_t_4 = PyInt_FromLong(NPY_SHORT); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 831; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __pyx_t_3 = PyObject_RichCompare(__pyx_v_t, __pyx_t_4, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 831; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 831; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - if (__pyx_t_6) { - (__pyx_v_f[0]) = 104; - goto __pyx_L15; - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":832 - * elif t == NPY_UBYTE: f[0] = 66 #"B" - * elif t == NPY_SHORT: f[0] = 104 #"h" - * elif t == NPY_USHORT: f[0] = 72 #"H" # <<<<<<<<<<<<<< - * elif t == NPY_INT: f[0] = 105 #"i" - * elif t == NPY_UINT: f[0] = 73 #"I" - */ - __pyx_t_3 = PyInt_FromLong(NPY_USHORT); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 832; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_4 = PyObject_RichCompare(__pyx_v_t, __pyx_t_3, Py_EQ); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 832; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 832; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - if (__pyx_t_6) { - (__pyx_v_f[0]) = 72; - goto __pyx_L15; - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":833 - * elif t == NPY_SHORT: f[0] = 104 #"h" - * elif t == NPY_USHORT: f[0] = 72 #"H" - * elif t == NPY_INT: f[0] = 105 #"i" # <<<<<<<<<<<<<< - * elif t == NPY_UINT: f[0] = 73 #"I" - * elif t == NPY_LONG: f[0] = 108 #"l" - */ - __pyx_t_4 = PyInt_FromLong(NPY_INT); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 833; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __pyx_t_3 = PyObject_RichCompare(__pyx_v_t, __pyx_t_4, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 833; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 833; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - if (__pyx_t_6) { - (__pyx_v_f[0]) = 105; - goto __pyx_L15; - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":834 - * elif t == NPY_USHORT: f[0] = 72 #"H" - * elif t == NPY_INT: f[0] = 105 #"i" - * elif t == NPY_UINT: f[0] = 73 #"I" # <<<<<<<<<<<<<< - * elif t == NPY_LONG: f[0] = 108 #"l" - * elif t == NPY_ULONG: f[0] = 76 #"L" - */ - __pyx_t_3 = PyInt_FromLong(NPY_UINT); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 834; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_4 = PyObject_RichCompare(__pyx_v_t, __pyx_t_3, Py_EQ); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 834; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 834; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - if (__pyx_t_6) { - (__pyx_v_f[0]) = 73; - goto __pyx_L15; - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":835 - * elif t == NPY_INT: f[0] = 105 #"i" - * elif t == NPY_UINT: f[0] = 73 #"I" - * elif t == NPY_LONG: f[0] = 108 #"l" # <<<<<<<<<<<<<< - * elif t == NPY_ULONG: f[0] = 76 #"L" - * elif t == NPY_LONGLONG: f[0] = 113 #"q" - */ - __pyx_t_4 = PyInt_FromLong(NPY_LONG); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 835; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __pyx_t_3 = PyObject_RichCompare(__pyx_v_t, __pyx_t_4, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 835; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 835; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - if (__pyx_t_6) { - (__pyx_v_f[0]) = 108; - goto __pyx_L15; - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":836 - * elif t == NPY_UINT: f[0] = 73 #"I" - * elif t == NPY_LONG: f[0] = 108 #"l" - * elif t == NPY_ULONG: f[0] = 76 #"L" # <<<<<<<<<<<<<< - * elif t == NPY_LONGLONG: f[0] = 113 #"q" - * elif t == NPY_ULONGLONG: f[0] = 81 #"Q" - */ - __pyx_t_3 = PyInt_FromLong(NPY_ULONG); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 836; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_4 = PyObject_RichCompare(__pyx_v_t, __pyx_t_3, Py_EQ); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 836; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 836; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - if (__pyx_t_6) { - (__pyx_v_f[0]) = 76; - goto __pyx_L15; - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":837 - * elif t == NPY_LONG: f[0] = 108 #"l" - * elif t == NPY_ULONG: f[0] = 76 #"L" - * elif t == NPY_LONGLONG: f[0] = 113 #"q" # <<<<<<<<<<<<<< - * elif t == NPY_ULONGLONG: f[0] = 81 #"Q" - * elif t == NPY_FLOAT: f[0] = 102 #"f" - */ - __pyx_t_4 = PyInt_FromLong(NPY_LONGLONG); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 837; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __pyx_t_3 = PyObject_RichCompare(__pyx_v_t, __pyx_t_4, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 837; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 837; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - if (__pyx_t_6) { - (__pyx_v_f[0]) = 113; - goto __pyx_L15; - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":838 - * elif t == NPY_ULONG: f[0] = 76 #"L" - * elif t == NPY_LONGLONG: f[0] = 113 #"q" - * elif t == NPY_ULONGLONG: f[0] = 81 #"Q" # <<<<<<<<<<<<<< - * elif t == NPY_FLOAT: f[0] = 102 #"f" - * elif t == NPY_DOUBLE: f[0] = 100 #"d" - */ - __pyx_t_3 = PyInt_FromLong(NPY_ULONGLONG); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 838; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_4 = PyObject_RichCompare(__pyx_v_t, __pyx_t_3, Py_EQ); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 838; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 838; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - if (__pyx_t_6) { - (__pyx_v_f[0]) = 81; - goto __pyx_L15; - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":839 - * elif t == NPY_LONGLONG: f[0] = 113 #"q" - * elif t == NPY_ULONGLONG: f[0] = 81 #"Q" - * elif t == NPY_FLOAT: f[0] = 102 #"f" # <<<<<<<<<<<<<< - * elif t == NPY_DOUBLE: f[0] = 100 #"d" - * elif t == NPY_LONGDOUBLE: f[0] = 103 #"g" - */ - __pyx_t_4 = PyInt_FromLong(NPY_FLOAT); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 839; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __pyx_t_3 = PyObject_RichCompare(__pyx_v_t, __pyx_t_4, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 839; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 839; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - if (__pyx_t_6) { - (__pyx_v_f[0]) = 102; - goto __pyx_L15; - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":840 - * elif t == NPY_ULONGLONG: f[0] = 81 #"Q" - * elif t == NPY_FLOAT: f[0] = 102 #"f" - * elif t == NPY_DOUBLE: f[0] = 100 #"d" # <<<<<<<<<<<<<< - * elif t == NPY_LONGDOUBLE: f[0] = 103 #"g" - * elif t == NPY_CFLOAT: f[0] = 90; f[1] = 102; f += 1 # Zf - */ - __pyx_t_3 = PyInt_FromLong(NPY_DOUBLE); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 840; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_4 = PyObject_RichCompare(__pyx_v_t, __pyx_t_3, Py_EQ); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 840; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 840; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - if (__pyx_t_6) { - (__pyx_v_f[0]) = 100; - goto __pyx_L15; - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":841 - * elif t == NPY_FLOAT: f[0] = 102 #"f" - * elif t == NPY_DOUBLE: f[0] = 100 #"d" - * elif t == NPY_LONGDOUBLE: f[0] = 103 #"g" # <<<<<<<<<<<<<< - * elif t == NPY_CFLOAT: f[0] = 90; f[1] = 102; f += 1 # Zf - * elif t == NPY_CDOUBLE: f[0] = 90; f[1] = 100; f += 1 # Zd - */ - __pyx_t_4 = PyInt_FromLong(NPY_LONGDOUBLE); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 841; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __pyx_t_3 = PyObject_RichCompare(__pyx_v_t, __pyx_t_4, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 841; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 841; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - if (__pyx_t_6) { - (__pyx_v_f[0]) = 103; - goto __pyx_L15; - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":842 - * elif t == NPY_DOUBLE: f[0] = 100 #"d" - * elif t == NPY_LONGDOUBLE: f[0] = 103 #"g" - * elif t == NPY_CFLOAT: f[0] = 90; f[1] = 102; f += 1 # Zf # <<<<<<<<<<<<<< - * elif t == NPY_CDOUBLE: f[0] = 90; f[1] = 100; f += 1 # Zd - * elif t == NPY_CLONGDOUBLE: f[0] = 90; f[1] = 103; f += 1 # Zg - */ - __pyx_t_3 = PyInt_FromLong(NPY_CFLOAT); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 842; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_4 = PyObject_RichCompare(__pyx_v_t, __pyx_t_3, Py_EQ); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 842; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 842; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - if (__pyx_t_6) { - (__pyx_v_f[0]) = 90; - (__pyx_v_f[1]) = 102; - __pyx_v_f = (__pyx_v_f + 1); - goto __pyx_L15; - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":843 - * elif t == NPY_LONGDOUBLE: f[0] = 103 #"g" - * elif t == NPY_CFLOAT: f[0] = 90; f[1] = 102; f += 1 # Zf - * elif t == NPY_CDOUBLE: f[0] = 90; f[1] = 100; f += 1 # Zd # <<<<<<<<<<<<<< - * elif t == NPY_CLONGDOUBLE: f[0] = 90; f[1] = 103; f += 1 # Zg - * elif t == NPY_OBJECT: f[0] = 79 #"O" - */ - __pyx_t_4 = PyInt_FromLong(NPY_CDOUBLE); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 843; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __pyx_t_3 = PyObject_RichCompare(__pyx_v_t, __pyx_t_4, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 843; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 843; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - if (__pyx_t_6) { - (__pyx_v_f[0]) = 90; - (__pyx_v_f[1]) = 100; - __pyx_v_f = (__pyx_v_f + 1); - goto __pyx_L15; - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":844 - * elif t == NPY_CFLOAT: f[0] = 90; f[1] = 102; f += 1 # Zf - * elif t == NPY_CDOUBLE: f[0] = 90; f[1] = 100; f += 1 # Zd - * elif t == NPY_CLONGDOUBLE: f[0] = 90; f[1] = 103; f += 1 # Zg # <<<<<<<<<<<<<< - * elif t == NPY_OBJECT: f[0] = 79 #"O" - * else: - */ - __pyx_t_3 = PyInt_FromLong(NPY_CLONGDOUBLE); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 844; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_4 = PyObject_RichCompare(__pyx_v_t, __pyx_t_3, Py_EQ); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 844; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 844; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - if (__pyx_t_6) { - (__pyx_v_f[0]) = 90; - (__pyx_v_f[1]) = 103; - __pyx_v_f = (__pyx_v_f + 1); - goto __pyx_L15; - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":845 - * elif t == NPY_CDOUBLE: f[0] = 90; f[1] = 100; f += 1 # Zd - * elif t == NPY_CLONGDOUBLE: f[0] = 90; f[1] = 103; f += 1 # Zg - * elif t == NPY_OBJECT: f[0] = 79 #"O" # <<<<<<<<<<<<<< - * else: - * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) - */ - __pyx_t_4 = PyInt_FromLong(NPY_OBJECT); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 845; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - __pyx_t_3 = PyObject_RichCompare(__pyx_v_t, __pyx_t_4, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 845; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 845; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - if (__pyx_t_6) { - (__pyx_v_f[0]) = 79; - goto __pyx_L15; - } - /*else*/ { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":847 - * elif t == NPY_OBJECT: f[0] = 79 #"O" - * else: - * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) # <<<<<<<<<<<<<< - * f += 1 - * else: - */ - __pyx_t_3 = PyUnicode_Format(__pyx_kp_u_unknown_dtype_code_in_numpy_pxd, __pyx_v_t); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 847; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __pyx_t_4 = PyTuple_New(1); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 847; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_4); - PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_3); - __Pyx_GIVEREF(__pyx_t_3); - __pyx_t_3 = 0; - __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_t_4, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 847; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_3); - __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0; - __Pyx_Raise(__pyx_t_3, 0, 0, 0); - __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; - {__pyx_filename = __pyx_f[1]; __pyx_lineno = 847; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - __pyx_L15:; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":848 - * else: - * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) - * f += 1 # <<<<<<<<<<<<<< - * else: - * # Cython ignores struct boundary information ("T{...}"), - */ - __pyx_v_f = (__pyx_v_f + 1); - goto __pyx_L13; - } - /*else*/ { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":852 - * # Cython ignores struct boundary information ("T{...}"), - * # so don't output it - * f = _util_dtypestring(child, f, end, offset) # <<<<<<<<<<<<<< - * return f - * - */ - __pyx_t_9 = __pyx_f_5numpy__util_dtypestring(__pyx_v_child, __pyx_v_f, __pyx_v_end, __pyx_v_offset); if (unlikely(__pyx_t_9 == NULL)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 852; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_v_f = __pyx_t_9; - } - __pyx_L13:; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":797 - * cdef tuple fields - * - * for childname in descr.names: # <<<<<<<<<<<<<< - * fields = descr.fields[childname] - * child, new_offset = fields - */ - } - __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":853 - * # so don't output it - * f = _util_dtypestring(child, f, end, offset) - * return f # <<<<<<<<<<<<<< - * - * - */ - __pyx_r = __pyx_v_f; - goto __pyx_L0; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":786 - * return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e) - * - * cdef inline char* _util_dtypestring(dtype descr, char* f, char* end, int* offset) except NULL: # <<<<<<<<<<<<<< - * # Recursive utility function used in __getbuffer__ to get format - * # string. The new location in the format string is returned. - */ - - /* function exit code */ - __pyx_L1_error:; - __Pyx_XDECREF(__pyx_t_1); - __Pyx_XDECREF(__pyx_t_3); - __Pyx_XDECREF(__pyx_t_4); - __Pyx_AddTraceback("numpy._util_dtypestring", __pyx_clineno, __pyx_lineno, __pyx_filename); - __pyx_r = NULL; - __pyx_L0:; - __Pyx_XDECREF((PyObject *)__pyx_v_child); - __Pyx_XDECREF(__pyx_v_fields); - __Pyx_XDECREF(__pyx_v_childname); - __Pyx_XDECREF(__pyx_v_new_offset); - __Pyx_XDECREF(__pyx_v_t); - __Pyx_RefNannyFinishContext(); - return __pyx_r; -} - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":969 - * - * - * cdef inline void set_array_base(ndarray arr, object base): # <<<<<<<<<<<<<< - * cdef PyObject* baseptr - * if base is None: - */ - -static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_arr, PyObject *__pyx_v_base) { - PyObject *__pyx_v_baseptr; - __Pyx_RefNannyDeclarations - int __pyx_t_1; - int __pyx_t_2; - __Pyx_RefNannySetupContext("set_array_base", 0); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":971 - * cdef inline void set_array_base(ndarray arr, object base): - * cdef PyObject* baseptr - * if base is None: # <<<<<<<<<<<<<< - * baseptr = NULL - * else: - */ - __pyx_t_1 = (__pyx_v_base == Py_None); - __pyx_t_2 = (__pyx_t_1 != 0); - if (__pyx_t_2) { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":972 - * cdef PyObject* baseptr - * if base is None: - * baseptr = NULL # <<<<<<<<<<<<<< - * else: - * Py_INCREF(base) # important to do this before decref below! - */ - __pyx_v_baseptr = NULL; - goto __pyx_L3; - } - /*else*/ { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":974 - * baseptr = NULL - * else: - * Py_INCREF(base) # important to do this before decref below! # <<<<<<<<<<<<<< - * baseptr = <PyObject*>base - * Py_XDECREF(arr.base) - */ - Py_INCREF(__pyx_v_base); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":975 - * else: - * Py_INCREF(base) # important to do this before decref below! - * baseptr = <PyObject*>base # <<<<<<<<<<<<<< - * Py_XDECREF(arr.base) - * arr.base = baseptr - */ - __pyx_v_baseptr = ((PyObject *)__pyx_v_base); - } - __pyx_L3:; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":976 - * Py_INCREF(base) # important to do this before decref below! - * baseptr = <PyObject*>base - * Py_XDECREF(arr.base) # <<<<<<<<<<<<<< - * arr.base = baseptr - * - */ - Py_XDECREF(__pyx_v_arr->base); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":977 - * baseptr = <PyObject*>base - * Py_XDECREF(arr.base) - * arr.base = baseptr # <<<<<<<<<<<<<< - * - * cdef inline object get_array_base(ndarray arr): - */ - __pyx_v_arr->base = __pyx_v_baseptr; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":969 - * - * - * cdef inline void set_array_base(ndarray arr, object base): # <<<<<<<<<<<<<< - * cdef PyObject* baseptr - * if base is None: - */ - - /* function exit code */ - __Pyx_RefNannyFinishContext(); -} - -/* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":979 - * arr.base = baseptr - * - * cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<< - * if arr.base is NULL: - * return None - */ - -static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__pyx_v_arr) { - PyObject *__pyx_r = NULL; - __Pyx_RefNannyDeclarations - int __pyx_t_1; - __Pyx_RefNannySetupContext("get_array_base", 0); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":980 - * - * cdef inline object get_array_base(ndarray arr): - * if arr.base is NULL: # <<<<<<<<<<<<<< - * return None - * else: - */ - __pyx_t_1 = ((__pyx_v_arr->base == NULL) != 0); - if (__pyx_t_1) { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":981 - * cdef inline object get_array_base(ndarray arr): - * if arr.base is NULL: - * return None # <<<<<<<<<<<<<< - * else: - * return <object>arr.base - */ - __Pyx_XDECREF(__pyx_r); - __Pyx_INCREF(Py_None); - __pyx_r = Py_None; - goto __pyx_L0; - } - /*else*/ { - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":983 - * return None - * else: - * return <object>arr.base # <<<<<<<<<<<<<< - */ - __Pyx_XDECREF(__pyx_r); - __Pyx_INCREF(((PyObject *)__pyx_v_arr->base)); - __pyx_r = ((PyObject *)__pyx_v_arr->base); - goto __pyx_L0; - } - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":979 - * arr.base = baseptr - * - * cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<< - * if arr.base is NULL: - * return None - */ - - /* function exit code */ - __pyx_L0:; - __Pyx_XGIVEREF(__pyx_r); - __Pyx_RefNannyFinishContext(); - return __pyx_r; -} - -static PyMethodDef __pyx_methods[] = { - {0, 0, 0, 0} -}; - -#if PY_MAJOR_VERSION >= 3 -static struct PyModuleDef __pyx_moduledef = { - #if PY_VERSION_HEX < 0x03020000 - { PyObject_HEAD_INIT(NULL) NULL, 0, NULL }, - #else - PyModuleDef_HEAD_INIT, - #endif - "ml3", - 0, /* m_doc */ - -1, /* m_size */ - __pyx_methods /* m_methods */, - NULL, /* m_reload */ - NULL, /* m_traverse */ - NULL, /* m_clear */ - NULL /* m_free */ -}; -#endif - -static __Pyx_StringTabEntry __pyx_string_tab[] = { - {&__pyx_n_s_DTYPE, __pyx_k_DTYPE, sizeof(__pyx_k_DTYPE), 0, 0, 1, 1}, - {&__pyx_kp_u_Format_string_allocated_too_shor, __pyx_k_Format_string_allocated_too_shor, sizeof(__pyx_k_Format_string_allocated_too_shor), 0, 1, 0, 0}, - {&__pyx_kp_u_Format_string_allocated_too_shor_2, __pyx_k_Format_string_allocated_too_shor_2, sizeof(__pyx_k_Format_string_allocated_too_shor_2), 0, 1, 0, 0}, - {&__pyx_kp_u_Non_native_byte_order_not_suppor, __pyx_k_Non_native_byte_order_not_suppor, sizeof(__pyx_k_Non_native_byte_order_not_suppor), 0, 1, 0, 0}, - {&__pyx_n_s_RuntimeError, __pyx_k_RuntimeError, sizeof(__pyx_k_RuntimeError), 0, 0, 1, 1}, - {&__pyx_kp_s_Users_ben_Documents_Cascade_Pro, __pyx_k_Users_ben_Documents_Cascade_Pro, sizeof(__pyx_k_Users_ben_Documents_Cascade_Pro), 0, 0, 1, 0}, - {&__pyx_n_s_ValueError, __pyx_k_ValueError, sizeof(__pyx_k_ValueError), 0, 0, 1, 1}, - {&__pyx_n_s_age, __pyx_k_age, sizeof(__pyx_k_age), 0, 0, 1, 1}, - {&__pyx_n_s_alpha, __pyx_k_alpha, sizeof(__pyx_k_alpha), 0, 0, 1, 1}, - {&__pyx_n_s_arange, __pyx_k_arange, sizeof(__pyx_k_arange), 0, 0, 1, 1}, - {&__pyx_n_s_beta, __pyx_k_beta, sizeof(__pyx_k_beta), 0, 0, 1, 1}, - {&__pyx_n_s_beta_add, __pyx_k_beta_add, sizeof(__pyx_k_beta_add), 0, 0, 1, 1}, - {&__pyx_n_s_delta, __pyx_k_delta, sizeof(__pyx_k_delta), 0, 0, 1, 1}, - {&__pyx_n_s_dist, __pyx_k_dist, sizeof(__pyx_k_dist), 0, 0, 1, 1}, - {&__pyx_n_s_dists, __pyx_k_dists, sizeof(__pyx_k_dists), 0, 0, 1, 1}, - {&__pyx_n_s_dt, __pyx_k_dt, sizeof(__pyx_k_dt), 0, 0, 1, 1}, - {&__pyx_n_s_dts, __pyx_k_dts, sizeof(__pyx_k_dts), 0, 0, 1, 1}, - {&__pyx_n_s_dtype, __pyx_k_dtype, sizeof(__pyx_k_dtype), 0, 0, 1, 1}, - {&__pyx_n_s_enumerate, __pyx_k_enumerate, sizeof(__pyx_k_enumerate), 0, 0, 1, 1}, - {&__pyx_n_s_failures, __pyx_k_failures, sizeof(__pyx_k_failures), 0, 0, 1, 1}, - {&__pyx_n_s_float64, __pyx_k_float64, sizeof(__pyx_k_float64), 0, 0, 1, 1}, - {&__pyx_n_s_i, __pyx_k_i, sizeof(__pyx_k_i), 0, 0, 1, 1}, - {&__pyx_n_s_import, __pyx_k_import, sizeof(__pyx_k_import), 0, 0, 1, 1}, - {&__pyx_kp_s_inf, __pyx_k_inf, sizeof(__pyx_k_inf), 0, 0, 1, 0}, - {&__pyx_n_s_itervalues, __pyx_k_itervalues, sizeof(__pyx_k_itervalues), 0, 0, 1, 1}, - {&__pyx_n_s_l, __pyx_k_l, sizeof(__pyx_k_l), 0, 0, 1, 1}, - {&__pyx_n_s_ll, __pyx_k_ll, sizeof(__pyx_k_ll), 0, 0, 1, 1}, - {&__pyx_n_s_main, __pyx_k_main, sizeof(__pyx_k_main), 0, 0, 1, 1}, - {&__pyx_n_s_max_beta, __pyx_k_max_beta, sizeof(__pyx_k_max_beta), 0, 0, 1, 1}, - {&__pyx_n_s_max_beta_add, __pyx_k_max_beta_add, sizeof(__pyx_k_max_beta_add), 0, 0, 1, 1}, - {&__pyx_n_s_max_roots, __pyx_k_max_roots, sizeof(__pyx_k_max_roots), 0, 0, 1, 1}, - {&__pyx_n_s_ml3, __pyx_k_ml3, sizeof(__pyx_k_ml3), 0, 0, 1, 1}, - {&__pyx_n_s_n_roots, __pyx_k_n_roots, sizeof(__pyx_k_n_roots), 0, 0, 1, 1}, - {&__pyx_n_s_n_victims, __pyx_k_n_victims, sizeof(__pyx_k_n_victims), 0, 0, 1, 1}, - {&__pyx_kp_u_ndarray_is_not_C_contiguous, __pyx_k_ndarray_is_not_C_contiguous, sizeof(__pyx_k_ndarray_is_not_C_contiguous), 0, 1, 0, 0}, - {&__pyx_kp_u_ndarray_is_not_Fortran_contiguou, __pyx_k_ndarray_is_not_Fortran_contiguou, sizeof(__pyx_k_ndarray_is_not_Fortran_contiguou), 0, 1, 0, 0}, - {&__pyx_n_s_non_seeds, __pyx_k_non_seeds, sizeof(__pyx_k_non_seeds), 0, 0, 1, 1}, - {&__pyx_n_s_non_victims, __pyx_k_non_victims, sizeof(__pyx_k_non_victims), 0, 0, 1, 1}, - {&__pyx_n_s_np, __pyx_k_np, sizeof(__pyx_k_np), 0, 0, 1, 1}, - {&__pyx_n_s_numpy, __pyx_k_numpy, sizeof(__pyx_k_numpy), 0, 0, 1, 1}, - {&__pyx_n_s_parent_dists, __pyx_k_parent_dists, sizeof(__pyx_k_parent_dists), 0, 0, 1, 1}, - {&__pyx_n_s_parent_dts, __pyx_k_parent_dts, sizeof(__pyx_k_parent_dts), 0, 0, 1, 1}, - {&__pyx_n_s_parents, __pyx_k_parents, sizeof(__pyx_k_parents), 0, 0, 1, 1}, - {&__pyx_n_s_prnt, __pyx_k_prnt, sizeof(__pyx_k_prnt), 0, 0, 1, 1}, - {&__pyx_n_s_prob, __pyx_k_prob, sizeof(__pyx_k_prob), 0, 0, 1, 1}, - {&__pyx_n_s_probs, __pyx_k_probs, sizeof(__pyx_k_probs), 0, 0, 1, 1}, - {&__pyx_n_s_probs_fail, __pyx_k_probs_fail, sizeof(__pyx_k_probs_fail), 0, 0, 1, 1}, - {&__pyx_n_s_range, __pyx_k_range, sizeof(__pyx_k_range), 0, 0, 1, 1}, - {&__pyx_n_s_root_victims, __pyx_k_root_victims, sizeof(__pyx_k_root_victims), 0, 0, 1, 1}, - {&__pyx_n_s_roots, __pyx_k_roots, sizeof(__pyx_k_roots), 0, 0, 1, 1}, - {&__pyx_n_s_s, __pyx_k_s, sizeof(__pyx_k_s), 0, 0, 1, 1}, - {&__pyx_n_s_seeds, __pyx_k_seeds, sizeof(__pyx_k_seeds), 0, 0, 1, 1}, - {&__pyx_n_s_successes, __pyx_k_successes, sizeof(__pyx_k_successes), 0, 0, 1, 1}, - {&__pyx_n_s_sum, __pyx_k_sum, sizeof(__pyx_k_sum), 0, 0, 1, 1}, - {&__pyx_n_s_t, __pyx_k_t, sizeof(__pyx_k_t), 0, 0, 1, 1}, - {&__pyx_n_s_test, __pyx_k_test, sizeof(__pyx_k_test), 0, 0, 1, 1}, - {&__pyx_n_s_thresh, __pyx_k_thresh, sizeof(__pyx_k_thresh), 0, 0, 1, 1}, - {&__pyx_kp_u_unknown_dtype_code_in_numpy_pxd, __pyx_k_unknown_dtype_code_in_numpy_pxd, sizeof(__pyx_k_unknown_dtype_code_in_numpy_pxd), 0, 1, 0, 0}, - {&__pyx_n_s_victims, __pyx_k_victims, sizeof(__pyx_k_victims), 0, 0, 1, 1}, - {&__pyx_n_s_w1, __pyx_k_w1, sizeof(__pyx_k_w1), 0, 0, 1, 1}, - {&__pyx_n_s_w2, __pyx_k_w2, sizeof(__pyx_k_w2), 0, 0, 1, 1}, - {&__pyx_n_s_w3, __pyx_k_w3, sizeof(__pyx_k_w3), 0, 0, 1, 1}, - {&__pyx_n_s_zeros, __pyx_k_zeros, sizeof(__pyx_k_zeros), 0, 0, 1, 1}, - {0, 0, 0, 0, 0, 0, 0} -}; -static int __Pyx_InitCachedBuiltins(void) { - __pyx_builtin_enumerate = __Pyx_GetBuiltinName(__pyx_n_s_enumerate); if (!__pyx_builtin_enumerate) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 41; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_builtin_sum = __Pyx_GetBuiltinName(__pyx_n_s_sum); if (!__pyx_builtin_sum) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 47; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_builtin_ValueError = __Pyx_GetBuiltinName(__pyx_n_s_ValueError); if (!__pyx_builtin_ValueError) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 218; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_builtin_range = __Pyx_GetBuiltinName(__pyx_n_s_range); if (!__pyx_builtin_range) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 231; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_builtin_RuntimeError = __Pyx_GetBuiltinName(__pyx_n_s_RuntimeError); if (!__pyx_builtin_RuntimeError) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 802; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - return 0; - __pyx_L1_error:; - return -1; -} - -static int __Pyx_InitCachedConstants(void) { - __Pyx_RefNannyDeclarations - __Pyx_RefNannySetupContext("__Pyx_InitCachedConstants", 0); - - /* "ml3.pyx":69 - * max_beta_add = float('-inf') - * # iterate over all victim nodes to find the optimal threshold - * for beta in np.arange(0.01, 1, .01): # <<<<<<<<<<<<<< - * thresh = log(beta/(3012.*(1.-beta))) - * seeds = probs<thresh - */ - __pyx_tuple_ = PyTuple_Pack(3, __pyx_float_0_01, __pyx_int_1, __pyx_float__01); if (unlikely(!__pyx_tuple_)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_tuple_); - __Pyx_GIVEREF(__pyx_tuple_); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":218 - * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS) - * and not PyArray_CHKFLAGS(self, NPY_C_CONTIGUOUS)): - * raise ValueError(u"ndarray is not C contiguous") # <<<<<<<<<<<<<< - * - * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) - */ - __pyx_tuple__2 = PyTuple_Pack(1, __pyx_kp_u_ndarray_is_not_C_contiguous); if (unlikely(!__pyx_tuple__2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 218; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_tuple__2); - __Pyx_GIVEREF(__pyx_tuple__2); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":222 - * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) - * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)): - * raise ValueError(u"ndarray is not Fortran contiguous") # <<<<<<<<<<<<<< - * - * info.buf = PyArray_DATA(self) - */ - __pyx_tuple__3 = PyTuple_Pack(1, __pyx_kp_u_ndarray_is_not_Fortran_contiguou); if (unlikely(!__pyx_tuple__3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 222; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_tuple__3); - __Pyx_GIVEREF(__pyx_tuple__3); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":260 - * if ((descr.byteorder == c'>' and little_endian) or - * (descr.byteorder == c'<' and not little_endian)): - * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<< - * if t == NPY_BYTE: f = "b" - * elif t == NPY_UBYTE: f = "B" - */ - __pyx_tuple__4 = PyTuple_Pack(1, __pyx_kp_u_Non_native_byte_order_not_suppor); if (unlikely(!__pyx_tuple__4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 260; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_tuple__4); - __Pyx_GIVEREF(__pyx_tuple__4); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":802 - * - * if (end - f) - <int>(new_offset - offset[0]) < 15: - * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") # <<<<<<<<<<<<<< - * - * if ((child.byteorder == c'>' and little_endian) or - */ - __pyx_tuple__5 = PyTuple_Pack(1, __pyx_kp_u_Format_string_allocated_too_shor); if (unlikely(!__pyx_tuple__5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 802; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_tuple__5); - __Pyx_GIVEREF(__pyx_tuple__5); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":806 - * if ((child.byteorder == c'>' and little_endian) or - * (child.byteorder == c'<' and not little_endian)): - * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<< - * # One could encode it in the format string and have Cython - * # complain instead, BUT: < and > in format strings also imply - */ - __pyx_tuple__6 = PyTuple_Pack(1, __pyx_kp_u_Non_native_byte_order_not_suppor); if (unlikely(!__pyx_tuple__6)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 806; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_tuple__6); - __Pyx_GIVEREF(__pyx_tuple__6); - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":826 - * t = child.type_num - * if end - f < 5: - * raise RuntimeError(u"Format string allocated too short.") # <<<<<<<<<<<<<< - * - * # Until ticket #99 is fixed, use integers to avoid warnings - */ - __pyx_tuple__7 = PyTuple_Pack(1, __pyx_kp_u_Format_string_allocated_too_shor_2); if (unlikely(!__pyx_tuple__7)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 826; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_tuple__7); - __Pyx_GIVEREF(__pyx_tuple__7); - - /* "ml3.pyx":27 - * return result - * - * def ml3(dict root_victims, dict victims, dict non_victims, DTYPE_t age, # <<<<<<<<<<<<<< - * DTYPE_t alpha, DTYPE_t delta): - * cdef: - */ - __pyx_tuple__8 = PyTuple_Pack(38, __pyx_n_s_root_victims, __pyx_n_s_victims, __pyx_n_s_non_victims, __pyx_n_s_age, __pyx_n_s_alpha, __pyx_n_s_delta, __pyx_n_s_n_roots, __pyx_n_s_n_victims, __pyx_n_s_roots, __pyx_n_s_i, __pyx_n_s_dist, __pyx_n_s_dt, __pyx_n_s_t, __pyx_n_s_l, __pyx_n_s_beta, __pyx_n_s_ll, __pyx_n_s_beta_add, __pyx_n_s_max_beta, __pyx_n_s_max_beta_add, __pyx_n_s_parents, __pyx_n_s_failures, __pyx_n_s_successes, __pyx_n_s_probs, __pyx_n_s_probs_fail, __pyx_n_s_parent_dists, __pyx_n_s_parent_dts, __pyx_n_s_dists, __pyx_n_s_dts, __pyx_n_s_s, __pyx_n_s_prob, __pyx_n_s_thresh, __pyx_n_s_seeds, __pyx_n_s_non_seeds, __pyx_n_s_max_roots, __pyx_n_s_prnt, __pyx_n_s_w1, __pyx_n_s_w2, __pyx_n_s_w3); if (unlikely(!__pyx_tuple__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_tuple__8); - __Pyx_GIVEREF(__pyx_tuple__8); - __pyx_codeobj__9 = (PyObject*)__Pyx_PyCode_New(6, 0, 38, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__8, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_Users_ben_Documents_Cascade_Pro, __pyx_n_s_ml3, 27, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__9)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_RefNannyFinishContext(); - return 0; - __pyx_L1_error:; - __Pyx_RefNannyFinishContext(); - return -1; -} - -static int __Pyx_InitGlobals(void) { - if (__Pyx_InitStrings(__pyx_string_tab) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; - __pyx_float__01 = PyFloat_FromDouble(.01); if (unlikely(!__pyx_float__01)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_float_0_01 = PyFloat_FromDouble(0.01); if (unlikely(!__pyx_float_0_01)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_int_1 = PyInt_FromLong(1); if (unlikely(!__pyx_int_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - return 0; - __pyx_L1_error:; - return -1; -} - -#if PY_MAJOR_VERSION < 3 -PyMODINIT_FUNC initml3(void); /*proto*/ -PyMODINIT_FUNC initml3(void) -#else -PyMODINIT_FUNC PyInit_ml3(void); /*proto*/ -PyMODINIT_FUNC PyInit_ml3(void) -#endif -{ - PyObject *__pyx_t_1 = NULL; - PyObject *__pyx_t_2 = NULL; - int __pyx_lineno = 0; - const char *__pyx_filename = NULL; - int __pyx_clineno = 0; - __Pyx_RefNannyDeclarations - #if CYTHON_REFNANNY - __Pyx_RefNanny = __Pyx_RefNannyImportAPI("refnanny"); - if (!__Pyx_RefNanny) { - PyErr_Clear(); - __Pyx_RefNanny = __Pyx_RefNannyImportAPI("Cython.Runtime.refnanny"); - if (!__Pyx_RefNanny) - Py_FatalError("failed to import 'refnanny' module"); - } - #endif - __Pyx_RefNannySetupContext("PyMODINIT_FUNC PyInit_ml3(void)", 0); - if ( __Pyx_check_binary_version() < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_empty_tuple = PyTuple_New(0); if (unlikely(!__pyx_empty_tuple)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_empty_bytes = PyBytes_FromStringAndSize("", 0); if (unlikely(!__pyx_empty_bytes)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #ifdef __Pyx_CyFunction_USED - if (__Pyx_CyFunction_init() < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #endif - #ifdef __Pyx_FusedFunction_USED - if (__pyx_FusedFunction_init() < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #endif - #ifdef __Pyx_Generator_USED - if (__pyx_Generator_init() < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #endif - /*--- Library function declarations ---*/ - /*--- Threads initialization code ---*/ - #if defined(__PYX_FORCE_INIT_THREADS) && __PYX_FORCE_INIT_THREADS - #ifdef WITH_THREAD /* Python build with threading support? */ - PyEval_InitThreads(); - #endif - #endif - /*--- Module creation code ---*/ - #if PY_MAJOR_VERSION < 3 - __pyx_m = Py_InitModule4("ml3", __pyx_methods, 0, 0, PYTHON_API_VERSION); Py_XINCREF(__pyx_m); - #else - __pyx_m = PyModule_Create(&__pyx_moduledef); - #endif - if (unlikely(!__pyx_m)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_d = PyModule_GetDict(__pyx_m); if (unlikely(!__pyx_d)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - Py_INCREF(__pyx_d); - __pyx_b = PyImport_AddModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_b)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #if CYTHON_COMPILING_IN_PYPY - Py_INCREF(__pyx_b); - #endif - if (PyObject_SetAttrString(__pyx_m, "__builtins__", __pyx_b) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; - /*--- Initialize various global constants etc. ---*/ - if (unlikely(__Pyx_InitGlobals() < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #if PY_MAJOR_VERSION < 3 && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT) - if (__Pyx_init_sys_getdefaultencoding_params() < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #endif - if (__pyx_module_is_main_ml3) { - if (PyObject_SetAttrString(__pyx_m, "__name__", __pyx_n_s_main) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; - } - #if PY_MAJOR_VERSION >= 3 - { - PyObject *modules = PyImport_GetModuleDict(); if (unlikely(!modules)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - if (!PyDict_GetItemString(modules, "ml3")) { - if (unlikely(PyDict_SetItemString(modules, "ml3", __pyx_m) < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - } - } - #endif - /*--- Builtin init code ---*/ - if (unlikely(__Pyx_InitCachedBuiltins() < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - /*--- Constants init code ---*/ - if (unlikely(__Pyx_InitCachedConstants() < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - /*--- Global init code ---*/ - /*--- Variable export code ---*/ - /*--- Function export code ---*/ - /*--- Type init code ---*/ - /*--- Type import code ---*/ - __pyx_ptype_7cpython_4type_type = __Pyx_ImportType(__Pyx_BUILTIN_MODULE_NAME, "type", - #if CYTHON_COMPILING_IN_PYPY - sizeof(PyTypeObject), - #else - sizeof(PyHeapTypeObject), - #endif - 0); if (unlikely(!__pyx_ptype_7cpython_4type_type)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 9; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_ptype_5numpy_dtype = __Pyx_ImportType("numpy", "dtype", sizeof(PyArray_Descr), 0); if (unlikely(!__pyx_ptype_5numpy_dtype)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 155; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_ptype_5numpy_flatiter = __Pyx_ImportType("numpy", "flatiter", sizeof(PyArrayIterObject), 0); if (unlikely(!__pyx_ptype_5numpy_flatiter)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 168; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_ptype_5numpy_broadcast = __Pyx_ImportType("numpy", "broadcast", sizeof(PyArrayMultiIterObject), 0); if (unlikely(!__pyx_ptype_5numpy_broadcast)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_ptype_5numpy_ndarray = __Pyx_ImportType("numpy", "ndarray", sizeof(PyArrayObject), 0); if (unlikely(!__pyx_ptype_5numpy_ndarray)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 181; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_ptype_5numpy_ufunc = __Pyx_ImportType("numpy", "ufunc", sizeof(PyUFuncObject), 0); if (unlikely(!__pyx_ptype_5numpy_ufunc)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 864; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - /*--- Variable import code ---*/ - /*--- Function import code ---*/ - /*--- Execution code ---*/ - - /* "ml3.pyx":2 - * # cython: boundscheck=False, cdivision=True - * import numpy as np # <<<<<<<<<<<<<< - * cimport numpy as np - * from libc.math cimport log, exp - */ - __pyx_t_1 = __Pyx_Import(__pyx_n_s_numpy, 0, -1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 2; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_1); - if (PyDict_SetItem(__pyx_d, __pyx_n_s_np, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 2; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; - - /* "ml3.pyx":6 - * from libc.math cimport log, exp - * - * DTYPE = np.float64 # <<<<<<<<<<<<<< - * ctypedef np.float_t DTYPE_t - * - */ - __pyx_t_1 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 6; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_1); - __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_float64); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 6; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_2); - __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; - if (PyDict_SetItem(__pyx_d, __pyx_n_s_DTYPE, __pyx_t_2) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 6; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; - - /* "ml3.pyx":27 - * return result - * - * def ml3(dict root_victims, dict victims, dict non_victims, DTYPE_t age, # <<<<<<<<<<<<<< - * DTYPE_t alpha, DTYPE_t delta): - * cdef: - */ - __pyx_t_2 = PyCFunction_NewEx(&__pyx_mdef_3ml3_1ml3, NULL, __pyx_n_s_ml3); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_2); - if (PyDict_SetItem(__pyx_d, __pyx_n_s_ml3, __pyx_t_2) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; - - /* "ml3.pyx":1 - * # cython: boundscheck=False, cdivision=True # <<<<<<<<<<<<<< - * import numpy as np - * cimport numpy as np - */ - __pyx_t_2 = PyDict_New(); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_2); - if (PyDict_SetItem(__pyx_d, __pyx_n_s_test, __pyx_t_2) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; - - /* "../../../../Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":979 - * arr.base = baseptr - * - * cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<< - * if arr.base is NULL: - * return None - */ - - /*--- Wrapped vars code ---*/ - - goto __pyx_L0; - __pyx_L1_error:; - __Pyx_XDECREF(__pyx_t_1); - __Pyx_XDECREF(__pyx_t_2); - if (__pyx_m) { - if (__pyx_d) { - __Pyx_AddTraceback("init ml3", __pyx_clineno, __pyx_lineno, __pyx_filename); - } - Py_DECREF(__pyx_m); __pyx_m = 0; - } else if (!PyErr_Occurred()) { - PyErr_SetString(PyExc_ImportError, "init ml3"); - } - __pyx_L0:; - __Pyx_RefNannyFinishContext(); - #if PY_MAJOR_VERSION < 3 - return; - #else - return __pyx_m; - #endif -} - -/* --- Runtime support code --- */ -#if CYTHON_REFNANNY -static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname) { - PyObject *m = NULL, *p = NULL; - void *r = NULL; - m = PyImport_ImportModule((char *)modname); - if (!m) goto end; - p = PyObject_GetAttrString(m, (char *)"RefNannyAPI"); - if (!p) goto end; - r = PyLong_AsVoidPtr(p); -end: - Py_XDECREF(p); - Py_XDECREF(m); - return (__Pyx_RefNannyAPIStruct *)r; -} -#endif - -static PyObject *__Pyx_GetBuiltinName(PyObject *name) { - PyObject* result = __Pyx_PyObject_GetAttrStr(__pyx_b, name); - if (unlikely(!result)) { - PyErr_Format(PyExc_NameError, -#if PY_MAJOR_VERSION >= 3 - "name '%U' is not defined", name); -#else - "name '%.200s' is not defined", PyString_AS_STRING(name)); -#endif - } - return result; -} - -static void __Pyx_RaiseArgtupleInvalid( - const char* func_name, - int exact, - Py_ssize_t num_min, - Py_ssize_t num_max, - Py_ssize_t num_found) -{ - Py_ssize_t num_expected; - const char *more_or_less; - if (num_found < num_min) { - num_expected = num_min; - more_or_less = "at least"; - } else { - num_expected = num_max; - more_or_less = "at most"; - } - if (exact) { - more_or_less = "exactly"; - } - PyErr_Format(PyExc_TypeError, - "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)", - func_name, more_or_less, num_expected, - (num_expected == 1) ? "" : "s", num_found); -} - -static void __Pyx_RaiseDoubleKeywordsError( - const char* func_name, - PyObject* kw_name) -{ - PyErr_Format(PyExc_TypeError, - #if PY_MAJOR_VERSION >= 3 - "%s() got multiple values for keyword argument '%U'", func_name, kw_name); - #else - "%s() got multiple values for keyword argument '%s'", func_name, - PyString_AsString(kw_name)); - #endif -} - -static int __Pyx_ParseOptionalKeywords( - PyObject *kwds, - PyObject **argnames[], - PyObject *kwds2, - PyObject *values[], - Py_ssize_t num_pos_args, - const char* function_name) -{ - PyObject *key = 0, *value = 0; - Py_ssize_t pos = 0; - PyObject*** name; - PyObject*** first_kw_arg = argnames + num_pos_args; - while (PyDict_Next(kwds, &pos, &key, &value)) { - name = first_kw_arg; - while (*name && (**name != key)) name++; - if (*name) { - values[name-argnames] = value; - continue; - } - name = first_kw_arg; - #if PY_MAJOR_VERSION < 3 - if (likely(PyString_CheckExact(key)) || likely(PyString_Check(key))) { - while (*name) { - if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key)) - && _PyString_Eq(**name, key)) { - values[name-argnames] = value; - break; - } - name++; - } - if (*name) continue; - else { - PyObject*** argname = argnames; - while (argname != first_kw_arg) { - if ((**argname == key) || ( - (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key)) - && _PyString_Eq(**argname, key))) { - goto arg_passed_twice; - } - argname++; - } - } - } else - #endif - if (likely(PyUnicode_Check(key))) { - while (*name) { - int cmp = (**name == key) ? 0 : - #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 - (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : - #endif - PyUnicode_Compare(**name, key); - if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; - if (cmp == 0) { - values[name-argnames] = value; - break; - } - name++; - } - if (*name) continue; - else { - PyObject*** argname = argnames; - while (argname != first_kw_arg) { - int cmp = (**argname == key) ? 0 : - #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 - (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : - #endif - PyUnicode_Compare(**argname, key); - if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; - if (cmp == 0) goto arg_passed_twice; - argname++; - } - } - } else - goto invalid_keyword_type; - if (kwds2) { - if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad; - } else { - goto invalid_keyword; - } - } - return 0; -arg_passed_twice: - __Pyx_RaiseDoubleKeywordsError(function_name, key); - goto bad; -invalid_keyword_type: - PyErr_Format(PyExc_TypeError, - "%.200s() keywords must be strings", function_name); - goto bad; -invalid_keyword: - PyErr_Format(PyExc_TypeError, - #if PY_MAJOR_VERSION < 3 - "%.200s() got an unexpected keyword argument '%.200s'", - function_name, PyString_AsString(key)); - #else - "%s() got an unexpected keyword argument '%U'", - function_name, key); - #endif -bad: - return -1; -} - -static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) { - PyErr_Format(PyExc_TypeError, - "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)", - name, type->tp_name, Py_TYPE(obj)->tp_name); -} -static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, - const char *name, int exact) -{ - if (unlikely(!type)) { - PyErr_SetString(PyExc_SystemError, "Missing type object"); - return 0; - } - if (none_allowed && obj == Py_None) return 1; - else if (exact) { - if (likely(Py_TYPE(obj) == type)) return 1; - #if PY_MAJOR_VERSION == 2 - else if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1; - #endif - } - else { - if (likely(PyObject_TypeCheck(obj, type))) return 1; - } - __Pyx_RaiseArgumentTypeInvalid(name, obj, type); - return 0; -} - -static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) { - PyObject *result; -#if CYTHON_COMPILING_IN_CPYTHON - result = PyDict_GetItem(__pyx_d, name); - if (likely(result)) { - Py_INCREF(result); - } else { -#else - result = PyObject_GetItem(__pyx_d, name); - if (!result) { - PyErr_Clear(); -#endif - result = __Pyx_GetBuiltinName(name); - } - return result; -} - -#if CYTHON_COMPILING_IN_CPYTHON -static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) { - PyObject *result; - ternaryfunc call = func->ob_type->tp_call; - if (unlikely(!call)) - return PyObject_Call(func, arg, kw); - if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) - return NULL; - result = (*call)(func, arg, kw); - Py_LeaveRecursiveCall(); - if (unlikely(!result) && unlikely(!PyErr_Occurred())) { - PyErr_SetString( - PyExc_SystemError, - "NULL result without error in PyObject_Call"); - } - return result; -} -#endif - -static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { - if (unlikely(!type)) { - PyErr_SetString(PyExc_SystemError, "Missing type object"); - return 0; - } - if (likely(PyObject_TypeCheck(obj, type))) - return 1; - PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", - Py_TYPE(obj)->tp_name, type->tp_name); - return 0; -} - -static CYTHON_INLINE int __Pyx_IsLittleEndian(void) { - unsigned int n = 1; - return *(unsigned char*)(&n) != 0; -} -static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, - __Pyx_BufFmt_StackElem* stack, - __Pyx_TypeInfo* type) { - stack[0].field = &ctx->root; - stack[0].parent_offset = 0; - ctx->root.type = type; - ctx->root.name = "buffer dtype"; - ctx->root.offset = 0; - ctx->head = stack; - ctx->head->field = &ctx->root; - ctx->fmt_offset = 0; - ctx->head->parent_offset = 0; - ctx->new_packmode = '@'; - ctx->enc_packmode = '@'; - ctx->new_count = 1; - ctx->enc_count = 0; - ctx->enc_type = 0; - ctx->is_complex = 0; - ctx->is_valid_array = 0; - ctx->struct_alignment = 0; - while (type->typegroup == 'S') { - ++ctx->head; - ctx->head->field = type->fields; - ctx->head->parent_offset = 0; - type = type->fields->type; - } -} -static int __Pyx_BufFmt_ParseNumber(const char** ts) { - int count; - const char* t = *ts; - if (*t < '0' || *t > '9') { - return -1; - } else { - count = *t++ - '0'; - while (*t >= '0' && *t < '9') { - count *= 10; - count += *t++ - '0'; - } - } - *ts = t; - return count; -} -static int __Pyx_BufFmt_ExpectNumber(const char **ts) { - int number = __Pyx_BufFmt_ParseNumber(ts); - if (number == -1) - PyErr_Format(PyExc_ValueError,\ - "Does not understand character buffer dtype format string ('%c')", **ts); - return number; -} -static void __Pyx_BufFmt_RaiseUnexpectedChar(char ch) { - PyErr_Format(PyExc_ValueError, - "Unexpected format string character: '%c'", ch); -} -static const char* __Pyx_BufFmt_DescribeTypeChar(char ch, int is_complex) { - switch (ch) { - case 'c': return "'char'"; - case 'b': return "'signed char'"; - case 'B': return "'unsigned char'"; - case 'h': return "'short'"; - case 'H': return "'unsigned short'"; - case 'i': return "'int'"; - case 'I': return "'unsigned int'"; - case 'l': return "'long'"; - case 'L': return "'unsigned long'"; - case 'q': return "'long long'"; - case 'Q': return "'unsigned long long'"; - case 'f': return (is_complex ? "'complex float'" : "'float'"); - case 'd': return (is_complex ? "'complex double'" : "'double'"); - case 'g': return (is_complex ? "'complex long double'" : "'long double'"); - case 'T': return "a struct"; - case 'O': return "Python object"; - case 'P': return "a pointer"; - case 's': case 'p': return "a string"; - case 0: return "end"; - default: return "unparseable format string"; - } -} -static size_t __Pyx_BufFmt_TypeCharToStandardSize(char ch, int is_complex) { - switch (ch) { - case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; - case 'h': case 'H': return 2; - case 'i': case 'I': case 'l': case 'L': return 4; - case 'q': case 'Q': return 8; - case 'f': return (is_complex ? 8 : 4); - case 'd': return (is_complex ? 16 : 8); - case 'g': { - PyErr_SetString(PyExc_ValueError, "Python does not define a standard format string size for long double ('g').."); - return 0; - } - case 'O': case 'P': return sizeof(void*); - default: - __Pyx_BufFmt_RaiseUnexpectedChar(ch); - return 0; - } -} -static size_t __Pyx_BufFmt_TypeCharToNativeSize(char ch, int is_complex) { - switch (ch) { - case 'c': case 'b': case 'B': case 's': case 'p': return 1; - case 'h': case 'H': return sizeof(short); - case 'i': case 'I': return sizeof(int); - case 'l': case 'L': return sizeof(long); - #ifdef HAVE_LONG_LONG - case 'q': case 'Q': return sizeof(PY_LONG_LONG); - #endif - case 'f': return sizeof(float) * (is_complex ? 2 : 1); - case 'd': return sizeof(double) * (is_complex ? 2 : 1); - case 'g': return sizeof(long double) * (is_complex ? 2 : 1); - case 'O': case 'P': return sizeof(void*); - default: { - __Pyx_BufFmt_RaiseUnexpectedChar(ch); - return 0; - } - } -} -typedef struct { char c; short x; } __Pyx_st_short; -typedef struct { char c; int x; } __Pyx_st_int; -typedef struct { char c; long x; } __Pyx_st_long; -typedef struct { char c; float x; } __Pyx_st_float; -typedef struct { char c; double x; } __Pyx_st_double; -typedef struct { char c; long double x; } __Pyx_st_longdouble; -typedef struct { char c; void *x; } __Pyx_st_void_p; -#ifdef HAVE_LONG_LONG -typedef struct { char c; PY_LONG_LONG x; } __Pyx_st_longlong; -#endif -static size_t __Pyx_BufFmt_TypeCharToAlignment(char ch, CYTHON_UNUSED int is_complex) { - switch (ch) { - case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; - case 'h': case 'H': return sizeof(__Pyx_st_short) - sizeof(short); - case 'i': case 'I': return sizeof(__Pyx_st_int) - sizeof(int); - case 'l': case 'L': return sizeof(__Pyx_st_long) - sizeof(long); -#ifdef HAVE_LONG_LONG - case 'q': case 'Q': return sizeof(__Pyx_st_longlong) - sizeof(PY_LONG_LONG); -#endif - case 'f': return sizeof(__Pyx_st_float) - sizeof(float); - case 'd': return sizeof(__Pyx_st_double) - sizeof(double); - case 'g': return sizeof(__Pyx_st_longdouble) - sizeof(long double); - case 'P': case 'O': return sizeof(__Pyx_st_void_p) - sizeof(void*); - default: - __Pyx_BufFmt_RaiseUnexpectedChar(ch); - return 0; - } -} -/* These are for computing the padding at the end of the struct to align - on the first member of the struct. This will probably the same as above, - but we don't have any guarantees. - */ -typedef struct { short x; char c; } __Pyx_pad_short; -typedef struct { int x; char c; } __Pyx_pad_int; -typedef struct { long x; char c; } __Pyx_pad_long; -typedef struct { float x; char c; } __Pyx_pad_float; -typedef struct { double x; char c; } __Pyx_pad_double; -typedef struct { long double x; char c; } __Pyx_pad_longdouble; -typedef struct { void *x; char c; } __Pyx_pad_void_p; -#ifdef HAVE_LONG_LONG -typedef struct { PY_LONG_LONG x; char c; } __Pyx_pad_longlong; -#endif -static size_t __Pyx_BufFmt_TypeCharToPadding(char ch, CYTHON_UNUSED int is_complex) { - switch (ch) { - case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; - case 'h': case 'H': return sizeof(__Pyx_pad_short) - sizeof(short); - case 'i': case 'I': return sizeof(__Pyx_pad_int) - sizeof(int); - case 'l': case 'L': return sizeof(__Pyx_pad_long) - sizeof(long); -#ifdef HAVE_LONG_LONG - case 'q': case 'Q': return sizeof(__Pyx_pad_longlong) - sizeof(PY_LONG_LONG); -#endif - case 'f': return sizeof(__Pyx_pad_float) - sizeof(float); - case 'd': return sizeof(__Pyx_pad_double) - sizeof(double); - case 'g': return sizeof(__Pyx_pad_longdouble) - sizeof(long double); - case 'P': case 'O': return sizeof(__Pyx_pad_void_p) - sizeof(void*); - default: - __Pyx_BufFmt_RaiseUnexpectedChar(ch); - return 0; - } -} -static char __Pyx_BufFmt_TypeCharToGroup(char ch, int is_complex) { - switch (ch) { - case 'c': - return 'H'; - case 'b': case 'h': case 'i': - case 'l': case 'q': case 's': case 'p': - return 'I'; - case 'B': case 'H': case 'I': case 'L': case 'Q': - return 'U'; - case 'f': case 'd': case 'g': - return (is_complex ? 'C' : 'R'); - case 'O': - return 'O'; - case 'P': - return 'P'; - default: { - __Pyx_BufFmt_RaiseUnexpectedChar(ch); - return 0; - } - } -} -static void __Pyx_BufFmt_RaiseExpected(__Pyx_BufFmt_Context* ctx) { - if (ctx->head == NULL || ctx->head->field == &ctx->root) { - const char* expected; - const char* quote; - if (ctx->head == NULL) { - expected = "end"; - quote = ""; - } else { - expected = ctx->head->field->type->name; - quote = "'"; - } - PyErr_Format(PyExc_ValueError, - "Buffer dtype mismatch, expected %s%s%s but got %s", - quote, expected, quote, - __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex)); - } else { - __Pyx_StructField* field = ctx->head->field; - __Pyx_StructField* parent = (ctx->head - 1)->field; - PyErr_Format(PyExc_ValueError, - "Buffer dtype mismatch, expected '%s' but got %s in '%s.%s'", - field->type->name, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex), - parent->type->name, field->name); - } -} -static int __Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context* ctx) { - char group; - size_t size, offset, arraysize = 1; - if (ctx->enc_type == 0) return 0; - if (ctx->head->field->type->arraysize[0]) { - int i, ndim = 0; - if (ctx->enc_type == 's' || ctx->enc_type == 'p') { - ctx->is_valid_array = ctx->head->field->type->ndim == 1; - ndim = 1; - if (ctx->enc_count != ctx->head->field->type->arraysize[0]) { - PyErr_Format(PyExc_ValueError, - "Expected a dimension of size %zu, got %zu", - ctx->head->field->type->arraysize[0], ctx->enc_count); - return -1; - } - } - if (!ctx->is_valid_array) { - PyErr_Format(PyExc_ValueError, "Expected %d dimensions, got %d", - ctx->head->field->type->ndim, ndim); - return -1; - } - for (i = 0; i < ctx->head->field->type->ndim; i++) { - arraysize *= ctx->head->field->type->arraysize[i]; - } - ctx->is_valid_array = 0; - ctx->enc_count = 1; - } - group = __Pyx_BufFmt_TypeCharToGroup(ctx->enc_type, ctx->is_complex); - do { - __Pyx_StructField* field = ctx->head->field; - __Pyx_TypeInfo* type = field->type; - if (ctx->enc_packmode == '@' || ctx->enc_packmode == '^') { - size = __Pyx_BufFmt_TypeCharToNativeSize(ctx->enc_type, ctx->is_complex); - } else { - size = __Pyx_BufFmt_TypeCharToStandardSize(ctx->enc_type, ctx->is_complex); - } - if (ctx->enc_packmode == '@') { - size_t align_at = __Pyx_BufFmt_TypeCharToAlignment(ctx->enc_type, ctx->is_complex); - size_t align_mod_offset; - if (align_at == 0) return -1; - align_mod_offset = ctx->fmt_offset % align_at; - if (align_mod_offset > 0) ctx->fmt_offset += align_at - align_mod_offset; - if (ctx->struct_alignment == 0) - ctx->struct_alignment = __Pyx_BufFmt_TypeCharToPadding(ctx->enc_type, - ctx->is_complex); - } - if (type->size != size || type->typegroup != group) { - if (type->typegroup == 'C' && type->fields != NULL) { - size_t parent_offset = ctx->head->parent_offset + field->offset; - ++ctx->head; - ctx->head->field = type->fields; - ctx->head->parent_offset = parent_offset; - continue; - } - if ((type->typegroup == 'H' || group == 'H') && type->size == size) { - } else { - __Pyx_BufFmt_RaiseExpected(ctx); - return -1; - } - } - offset = ctx->head->parent_offset + field->offset; - if (ctx->fmt_offset != offset) { - PyErr_Format(PyExc_ValueError, - "Buffer dtype mismatch; next field is at offset %" CYTHON_FORMAT_SSIZE_T "d but %" CYTHON_FORMAT_SSIZE_T "d expected", - (Py_ssize_t)ctx->fmt_offset, (Py_ssize_t)offset); - return -1; - } - ctx->fmt_offset += size; - if (arraysize) - ctx->fmt_offset += (arraysize - 1) * size; - --ctx->enc_count; - while (1) { - if (field == &ctx->root) { - ctx->head = NULL; - if (ctx->enc_count != 0) { - __Pyx_BufFmt_RaiseExpected(ctx); - return -1; - } - break; - } - ctx->head->field = ++field; - if (field->type == NULL) { - --ctx->head; - field = ctx->head->field; - continue; - } else if (field->type->typegroup == 'S') { - size_t parent_offset = ctx->head->parent_offset + field->offset; - if (field->type->fields->type == NULL) continue; - field = field->type->fields; - ++ctx->head; - ctx->head->field = field; - ctx->head->parent_offset = parent_offset; - break; - } else { - break; - } - } - } while (ctx->enc_count); - ctx->enc_type = 0; - ctx->is_complex = 0; - return 0; -} -static CYTHON_INLINE PyObject * -__pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp) -{ - const char *ts = *tsp; - int i = 0, number; - int ndim = ctx->head->field->type->ndim; -; - ++ts; - if (ctx->new_count != 1) { - PyErr_SetString(PyExc_ValueError, - "Cannot handle repeated arrays in format string"); - return NULL; - } - if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; - while (*ts && *ts != ')') { - switch (*ts) { - case ' ': case '\f': case '\r': case '\n': case '\t': case '\v': continue; - default: break; - } - number = __Pyx_BufFmt_ExpectNumber(&ts); - if (number == -1) return NULL; - if (i < ndim && (size_t) number != ctx->head->field->type->arraysize[i]) - return PyErr_Format(PyExc_ValueError, - "Expected a dimension of size %zu, got %d", - ctx->head->field->type->arraysize[i], number); - if (*ts != ',' && *ts != ')') - return PyErr_Format(PyExc_ValueError, - "Expected a comma in format string, got '%c'", *ts); - if (*ts == ',') ts++; - i++; - } - if (i != ndim) - return PyErr_Format(PyExc_ValueError, "Expected %d dimension(s), got %d", - ctx->head->field->type->ndim, i); - if (!*ts) { - PyErr_SetString(PyExc_ValueError, - "Unexpected end of format string, expected ')'"); - return NULL; - } - ctx->is_valid_array = 1; - ctx->new_count = 1; - *tsp = ++ts; - return Py_None; -} -static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts) { - int got_Z = 0; - while (1) { - switch(*ts) { - case 0: - if (ctx->enc_type != 0 && ctx->head == NULL) { - __Pyx_BufFmt_RaiseExpected(ctx); - return NULL; - } - if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; - if (ctx->head != NULL) { - __Pyx_BufFmt_RaiseExpected(ctx); - return NULL; - } - return ts; - case ' ': - case '\r': - case '\n': - ++ts; - break; - case '<': - if (!__Pyx_IsLittleEndian()) { - PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler"); - return NULL; - } - ctx->new_packmode = '='; - ++ts; - break; - case '>': - case '!': - if (__Pyx_IsLittleEndian()) { - PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler"); - return NULL; - } - ctx->new_packmode = '='; - ++ts; - break; - case '=': - case '@': - case '^': - ctx->new_packmode = *ts++; - break; - case 'T': - { - const char* ts_after_sub; - size_t i, struct_count = ctx->new_count; - size_t struct_alignment = ctx->struct_alignment; - ctx->new_count = 1; - ++ts; - if (*ts != '{') { - PyErr_SetString(PyExc_ValueError, "Buffer acquisition: Expected '{' after 'T'"); - return NULL; - } - if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; - ctx->enc_type = 0; - ctx->enc_count = 0; - ctx->struct_alignment = 0; - ++ts; - ts_after_sub = ts; - for (i = 0; i != struct_count; ++i) { - ts_after_sub = __Pyx_BufFmt_CheckString(ctx, ts); - if (!ts_after_sub) return NULL; - } - ts = ts_after_sub; - if (struct_alignment) ctx->struct_alignment = struct_alignment; - } - break; - case '}': - { - size_t alignment = ctx->struct_alignment; - ++ts; - if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; - ctx->enc_type = 0; - if (alignment && ctx->fmt_offset % alignment) { - ctx->fmt_offset += alignment - (ctx->fmt_offset % alignment); - } - } - return ts; - case 'x': - if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; - ctx->fmt_offset += ctx->new_count; - ctx->new_count = 1; - ctx->enc_count = 0; - ctx->enc_type = 0; - ctx->enc_packmode = ctx->new_packmode; - ++ts; - break; - case 'Z': - got_Z = 1; - ++ts; - if (*ts != 'f' && *ts != 'd' && *ts != 'g') { - __Pyx_BufFmt_RaiseUnexpectedChar('Z'); - return NULL; - } - case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I': - case 'l': case 'L': case 'q': case 'Q': - case 'f': case 'd': case 'g': - case 'O': case 'p': - if (ctx->enc_type == *ts && got_Z == ctx->is_complex && - ctx->enc_packmode == ctx->new_packmode) { - ctx->enc_count += ctx->new_count; - ctx->new_count = 1; - got_Z = 0; - ++ts; - break; - } - case 's': - if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; - ctx->enc_count = ctx->new_count; - ctx->enc_packmode = ctx->new_packmode; - ctx->enc_type = *ts; - ctx->is_complex = got_Z; - ++ts; - ctx->new_count = 1; - got_Z = 0; - break; - case ':': - ++ts; - while(*ts != ':') ++ts; - ++ts; - break; - case '(': - if (!__pyx_buffmt_parse_array(ctx, &ts)) return NULL; - break; - default: - { - int number = __Pyx_BufFmt_ExpectNumber(&ts); - if (number == -1) return NULL; - ctx->new_count = (size_t)number; - } - } - } -} -static CYTHON_INLINE void __Pyx_ZeroBuffer(Py_buffer* buf) { - buf->buf = NULL; - buf->obj = NULL; - buf->strides = __Pyx_zeros; - buf->shape = __Pyx_zeros; - buf->suboffsets = __Pyx_minusones; -} -static CYTHON_INLINE int __Pyx_GetBufferAndValidate( - Py_buffer* buf, PyObject* obj, __Pyx_TypeInfo* dtype, int flags, - int nd, int cast, __Pyx_BufFmt_StackElem* stack) -{ - if (obj == Py_None || obj == NULL) { - __Pyx_ZeroBuffer(buf); - return 0; - } - buf->buf = NULL; - if (__Pyx_GetBuffer(obj, buf, flags) == -1) goto fail; - if (buf->ndim != nd) { - PyErr_Format(PyExc_ValueError, - "Buffer has wrong number of dimensions (expected %d, got %d)", - nd, buf->ndim); - goto fail; - } - if (!cast) { - __Pyx_BufFmt_Context ctx; - __Pyx_BufFmt_Init(&ctx, stack, dtype); - if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail; - } - if ((unsigned)buf->itemsize != dtype->size) { - PyErr_Format(PyExc_ValueError, - "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "d byte%s) does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "d byte%s)", - buf->itemsize, (buf->itemsize > 1) ? "s" : "", - dtype->name, (Py_ssize_t)dtype->size, (dtype->size > 1) ? "s" : ""); - goto fail; - } - if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones; - return 0; -fail:; - __Pyx_ZeroBuffer(buf); - return -1; -} -static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) { - if (info->buf == NULL) return; - if (info->suboffsets == __Pyx_minusones) info->suboffsets = NULL; - __Pyx_ReleaseBuffer(info); -} - -static CYTHON_INLINE int __Pyx_IterFinish(void) { -#if CYTHON_COMPILING_IN_CPYTHON - PyThreadState *tstate = PyThreadState_GET(); - PyObject* exc_type = tstate->curexc_type; - if (unlikely(exc_type)) { - if (likely(exc_type == PyExc_StopIteration) || PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration)) { - PyObject *exc_value, *exc_tb; - exc_value = tstate->curexc_value; - exc_tb = tstate->curexc_traceback; - tstate->curexc_type = 0; - tstate->curexc_value = 0; - tstate->curexc_traceback = 0; - Py_DECREF(exc_type); - Py_XDECREF(exc_value); - Py_XDECREF(exc_tb); - return 0; - } else { - return -1; - } - } - return 0; -#else - if (unlikely(PyErr_Occurred())) { - if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) { - PyErr_Clear(); - return 0; - } else { - return -1; - } - } - return 0; -#endif -} - -#if CYTHON_COMPILING_IN_CPYTHON -static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) { - PyObject *self, *result; - PyCFunction cfunc; - cfunc = PyCFunction_GET_FUNCTION(func); - self = PyCFunction_GET_SELF(func); - if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) - return NULL; - result = cfunc(self, arg); - Py_LeaveRecursiveCall(); - if (unlikely(!result) && unlikely(!PyErr_Occurred())) { - PyErr_SetString( - PyExc_SystemError, - "NULL result without error in PyObject_Call"); - } - return result; -} -#endif - -#if CYTHON_COMPILING_IN_CPYTHON -static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func) { -#ifdef __Pyx_CyFunction_USED - if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) { -#else - if (likely(PyCFunction_Check(func))) { -#endif - if (likely(PyCFunction_GET_FLAGS(func) & METH_NOARGS)) { - return __Pyx_PyObject_CallMethO(func, NULL); - } - } - return __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL); -} -#endif - -#if CYTHON_COMPILING_IN_CPYTHON -static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) { - PyObject *result; - PyObject *args = PyTuple_New(1); - if (unlikely(!args)) return NULL; - Py_INCREF(arg); - PyTuple_SET_ITEM(args, 0, arg); - result = __Pyx_PyObject_Call(func, args, NULL); - Py_DECREF(args); - return result; -} -static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { -#ifdef __Pyx_CyFunction_USED - if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) { -#else - if (likely(PyCFunction_Check(func))) { -#endif - if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) { - return __Pyx_PyObject_CallMethO(func, arg); - } - } - return __Pyx__PyObject_CallOneArg(func, arg); -} -#else -static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { - PyObject* args = PyTuple_Pack(1, arg); - return (likely(args)) ? __Pyx_PyObject_Call(func, args, NULL) : NULL; -} -#endif - -static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name) { - PyObject *method, *result = NULL; - method = __Pyx_PyObject_GetAttrStr(obj, method_name); - if (unlikely(!method)) goto bad; -#if CYTHON_COMPILING_IN_CPYTHON - if (likely(PyMethod_Check(method))) { - PyObject *self = PyMethod_GET_SELF(method); - if (likely(self)) { - PyObject *function = PyMethod_GET_FUNCTION(method); - result = __Pyx_PyObject_CallOneArg(function, self); - Py_DECREF(method); - return result; - } - } -#endif - result = __Pyx_PyObject_CallNoArg(method); - Py_DECREF(method); -bad: - return result; -} - -static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { - PyErr_Format(PyExc_ValueError, - "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", - index, (index == 1) ? "" : "s"); -} - -static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { - PyErr_Format(PyExc_ValueError, - "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); -} - -static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) { - if (unlikely(retval)) { - Py_DECREF(retval); - __Pyx_RaiseTooManyValuesError(expected); - return -1; - } else { - return __Pyx_IterFinish(); - } - return 0; -} - -static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { - PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); -} - -static void __Pyx_UnpackTupleError(PyObject *t, Py_ssize_t index) { - if (t == Py_None) { - __Pyx_RaiseNoneNotIterableError(); - } else if (PyTuple_GET_SIZE(t) < index) { - __Pyx_RaiseNeedMoreValuesError(PyTuple_GET_SIZE(t)); - } else { - __Pyx_RaiseTooManyValuesError(index); - } -} - -static CYTHON_INLINE int __Pyx_unpack_tuple2(PyObject* tuple, PyObject** pvalue1, PyObject** pvalue2, - int is_tuple, int has_known_size, int decref_tuple) { - Py_ssize_t index; - PyObject *value1 = NULL, *value2 = NULL, *iter = NULL; - if (!is_tuple && unlikely(!PyTuple_Check(tuple))) { - iternextfunc iternext; - iter = PyObject_GetIter(tuple); - if (unlikely(!iter)) goto bad; - if (decref_tuple) { Py_DECREF(tuple); tuple = NULL; } - iternext = Py_TYPE(iter)->tp_iternext; - value1 = iternext(iter); if (unlikely(!value1)) { index = 0; goto unpacking_failed; } - value2 = iternext(iter); if (unlikely(!value2)) { index = 1; goto unpacking_failed; } - if (!has_known_size && unlikely(__Pyx_IternextUnpackEndCheck(iternext(iter), 2))) goto bad; - Py_DECREF(iter); - } else { - if (!has_known_size && unlikely(PyTuple_GET_SIZE(tuple) != 2)) { - __Pyx_UnpackTupleError(tuple, 2); - goto bad; - } -#if CYTHON_COMPILING_IN_PYPY - value1 = PySequence_ITEM(tuple, 0); - if (unlikely(!value1)) goto bad; - value2 = PySequence_ITEM(tuple, 1); - if (unlikely(!value2)) goto bad; -#else - value1 = PyTuple_GET_ITEM(tuple, 0); - value2 = PyTuple_GET_ITEM(tuple, 1); - Py_INCREF(value1); - Py_INCREF(value2); -#endif - if (decref_tuple) { Py_DECREF(tuple); } - } - *pvalue1 = value1; - *pvalue2 = value2; - return 0; -unpacking_failed: - if (!has_known_size && __Pyx_IterFinish() == 0) - __Pyx_RaiseNeedMoreValuesError(index); -bad: - Py_XDECREF(iter); - Py_XDECREF(value1); - Py_XDECREF(value2); - if (decref_tuple) { Py_XDECREF(tuple); } - return -1; -} - -static CYTHON_INLINE PyObject* __Pyx_dict_iterator(PyObject* iterable, int is_dict, PyObject* method_name, - Py_ssize_t* p_orig_length, int* p_source_is_dict) { - is_dict = is_dict || likely(PyDict_CheckExact(iterable)); - *p_source_is_dict = is_dict; -#if !CYTHON_COMPILING_IN_PYPY - if (is_dict) { - *p_orig_length = PyDict_Size(iterable); - Py_INCREF(iterable); - return iterable; - } -#endif - *p_orig_length = 0; - if (method_name) { - PyObject* iter; - iterable = __Pyx_PyObject_CallMethod0(iterable, method_name); - if (!iterable) - return NULL; -#if !CYTHON_COMPILING_IN_PYPY - if (PyTuple_CheckExact(iterable) || PyList_CheckExact(iterable)) - return iterable; -#endif - iter = PyObject_GetIter(iterable); - Py_DECREF(iterable); - return iter; - } - return PyObject_GetIter(iterable); -} -static CYTHON_INLINE int __Pyx_dict_iter_next(PyObject* iter_obj, Py_ssize_t orig_length, Py_ssize_t* ppos, - PyObject** pkey, PyObject** pvalue, PyObject** pitem, int source_is_dict) { - PyObject* next_item; -#if !CYTHON_COMPILING_IN_PYPY - if (source_is_dict) { - PyObject *key, *value; - if (unlikely(orig_length != PyDict_Size(iter_obj))) { - PyErr_SetString(PyExc_RuntimeError, "dictionary changed size during iteration"); - return -1; - } - if (unlikely(!PyDict_Next(iter_obj, ppos, &key, &value))) { - return 0; - } - if (pitem) { - PyObject* tuple = PyTuple_New(2); - if (unlikely(!tuple)) { - return -1; - } - Py_INCREF(key); - Py_INCREF(value); - PyTuple_SET_ITEM(tuple, 0, key); - PyTuple_SET_ITEM(tuple, 1, value); - *pitem = tuple; - } else { - if (pkey) { - Py_INCREF(key); - *pkey = key; - } - if (pvalue) { - Py_INCREF(value); - *pvalue = value; - } - } - return 1; - } else if (PyTuple_CheckExact(iter_obj)) { - Py_ssize_t pos = *ppos; - if (unlikely(pos >= PyTuple_GET_SIZE(iter_obj))) return 0; - *ppos = pos + 1; - next_item = PyTuple_GET_ITEM(iter_obj, pos); - Py_INCREF(next_item); - } else if (PyList_CheckExact(iter_obj)) { - Py_ssize_t pos = *ppos; - if (unlikely(pos >= PyList_GET_SIZE(iter_obj))) return 0; - *ppos = pos + 1; - next_item = PyList_GET_ITEM(iter_obj, pos); - Py_INCREF(next_item); - } else -#endif - { - next_item = PyIter_Next(iter_obj); - if (unlikely(!next_item)) { - return __Pyx_IterFinish(); - } - } - if (pitem) { - *pitem = next_item; - } else if (pkey && pvalue) { - if (__Pyx_unpack_tuple2(next_item, pkey, pvalue, source_is_dict, source_is_dict, 1)) - return -1; - } else if (pkey) { - *pkey = next_item; - } else { - *pvalue = next_item; - } - return 1; -} - -static double __Pyx__PyObject_AsDouble(PyObject* obj) { - PyObject* float_value; -#if CYTHON_COMPILING_IN_PYPY - float_value = PyNumber_Float(obj); -#else - PyNumberMethods *nb = Py_TYPE(obj)->tp_as_number; - if (likely(nb) && likely(nb->nb_float)) { - float_value = nb->nb_float(obj); - if (likely(float_value) && unlikely(!PyFloat_Check(float_value))) { - PyErr_Format(PyExc_TypeError, - "__float__ returned non-float (type %.200s)", - Py_TYPE(float_value)->tp_name); - Py_DECREF(float_value); - goto bad; - } - } else if (PyUnicode_CheckExact(obj) || PyBytes_CheckExact(obj)) { -#if PY_MAJOR_VERSION >= 3 - float_value = PyFloat_FromString(obj); -#else - float_value = PyFloat_FromString(obj, 0); -#endif - } else { - PyObject* args = PyTuple_New(1); - if (unlikely(!args)) goto bad; - PyTuple_SET_ITEM(args, 0, obj); - float_value = PyObject_Call((PyObject*)&PyFloat_Type, args, 0); - PyTuple_SET_ITEM(args, 0, 0); - Py_DECREF(args); - } -#endif - if (likely(float_value)) { - double value = PyFloat_AS_DOUBLE(float_value); - Py_DECREF(float_value); - return value; - } -bad: - return (double)-1; -} - -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { - PyObject *r; - if (!j) return NULL; - r = PyObject_GetItem(o, j); - Py_DECREF(j); - return r; -} -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, - int wraparound, int boundscheck) { -#if CYTHON_COMPILING_IN_CPYTHON - if (wraparound & unlikely(i < 0)) i += PyList_GET_SIZE(o); - if ((!boundscheck) || likely((0 <= i) & (i < PyList_GET_SIZE(o)))) { - PyObject *r = PyList_GET_ITEM(o, i); - Py_INCREF(r); - return r; - } - return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); -#else - return PySequence_GetItem(o, i); -#endif -} -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, - int wraparound, int boundscheck) { -#if CYTHON_COMPILING_IN_CPYTHON - if (wraparound & unlikely(i < 0)) i += PyTuple_GET_SIZE(o); - if ((!boundscheck) || likely((0 <= i) & (i < PyTuple_GET_SIZE(o)))) { - PyObject *r = PyTuple_GET_ITEM(o, i); - Py_INCREF(r); - return r; - } - return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); -#else - return PySequence_GetItem(o, i); -#endif -} -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, - int is_list, int wraparound, int boundscheck) { -#if CYTHON_COMPILING_IN_CPYTHON - if (is_list || PyList_CheckExact(o)) { - Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o); - if ((!boundscheck) || (likely((n >= 0) & (n < PyList_GET_SIZE(o))))) { - PyObject *r = PyList_GET_ITEM(o, n); - Py_INCREF(r); - return r; - } - } - else if (PyTuple_CheckExact(o)) { - Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o); - if ((!boundscheck) || likely((n >= 0) & (n < PyTuple_GET_SIZE(o)))) { - PyObject *r = PyTuple_GET_ITEM(o, n); - Py_INCREF(r); - return r; - } - } else { - PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence; - if (likely(m && m->sq_item)) { - if (wraparound && unlikely(i < 0) && likely(m->sq_length)) { - Py_ssize_t l = m->sq_length(o); - if (likely(l >= 0)) { - i += l; - } else { - if (PyErr_ExceptionMatches(PyExc_OverflowError)) - PyErr_Clear(); - else - return NULL; - } - } - return m->sq_item(o, i); - } - } -#else - if (is_list || PySequence_Check(o)) { - return PySequence_GetItem(o, i); - } -#endif - return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); -} - -static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb) { -#if CYTHON_COMPILING_IN_CPYTHON - PyObject *tmp_type, *tmp_value, *tmp_tb; - PyThreadState *tstate = PyThreadState_GET(); - tmp_type = tstate->curexc_type; - tmp_value = tstate->curexc_value; - tmp_tb = tstate->curexc_traceback; - tstate->curexc_type = type; - tstate->curexc_value = value; - tstate->curexc_traceback = tb; - Py_XDECREF(tmp_type); - Py_XDECREF(tmp_value); - Py_XDECREF(tmp_tb); -#else - PyErr_Restore(type, value, tb); -#endif -} -static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb) { -#if CYTHON_COMPILING_IN_CPYTHON - PyThreadState *tstate = PyThreadState_GET(); - *type = tstate->curexc_type; - *value = tstate->curexc_value; - *tb = tstate->curexc_traceback; - tstate->curexc_type = 0; - tstate->curexc_value = 0; - tstate->curexc_traceback = 0; -#else - PyErr_Fetch(type, value, tb); -#endif -} - -#if PY_MAJOR_VERSION < 3 -static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, - CYTHON_UNUSED PyObject *cause) { - Py_XINCREF(type); - if (!value || value == Py_None) - value = NULL; - else - Py_INCREF(value); - if (!tb || tb == Py_None) - tb = NULL; - else { - Py_INCREF(tb); - if (!PyTraceBack_Check(tb)) { - PyErr_SetString(PyExc_TypeError, - "raise: arg 3 must be a traceback or None"); - goto raise_error; - } - } - if (PyType_Check(type)) { -#if CYTHON_COMPILING_IN_PYPY - if (!value) { - Py_INCREF(Py_None); - value = Py_None; - } -#endif - PyErr_NormalizeException(&type, &value, &tb); - } else { - if (value) { - PyErr_SetString(PyExc_TypeError, - "instance exception may not have a separate value"); - goto raise_error; - } - value = type; - type = (PyObject*) Py_TYPE(type); - Py_INCREF(type); - if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) { - PyErr_SetString(PyExc_TypeError, - "raise: exception class must be a subclass of BaseException"); - goto raise_error; - } - } - __Pyx_ErrRestore(type, value, tb); - return; -raise_error: - Py_XDECREF(value); - Py_XDECREF(type); - Py_XDECREF(tb); - return; -} -#else -static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { - PyObject* owned_instance = NULL; - if (tb == Py_None) { - tb = 0; - } else if (tb && !PyTraceBack_Check(tb)) { - PyErr_SetString(PyExc_TypeError, - "raise: arg 3 must be a traceback or None"); - goto bad; - } - if (value == Py_None) - value = 0; - if (PyExceptionInstance_Check(type)) { - if (value) { - PyErr_SetString(PyExc_TypeError, - "instance exception may not have a separate value"); - goto bad; - } - value = type; - type = (PyObject*) Py_TYPE(value); - } else if (PyExceptionClass_Check(type)) { - PyObject *instance_class = NULL; - if (value && PyExceptionInstance_Check(value)) { - instance_class = (PyObject*) Py_TYPE(value); - if (instance_class != type) { - if (PyObject_IsSubclass(instance_class, type)) { - type = instance_class; - } else { - instance_class = NULL; - } - } - } - if (!instance_class) { - PyObject *args; - if (!value) - args = PyTuple_New(0); - else if (PyTuple_Check(value)) { - Py_INCREF(value); - args = value; - } else - args = PyTuple_Pack(1, value); - if (!args) - goto bad; - owned_instance = PyObject_Call(type, args, NULL); - Py_DECREF(args); - if (!owned_instance) - goto bad; - value = owned_instance; - if (!PyExceptionInstance_Check(value)) { - PyErr_Format(PyExc_TypeError, - "calling %R should have returned an instance of " - "BaseException, not %R", - type, Py_TYPE(value)); - goto bad; - } - } - } else { - PyErr_SetString(PyExc_TypeError, - "raise: exception class must be a subclass of BaseException"); - goto bad; - } -#if PY_VERSION_HEX >= 0x03030000 - if (cause) { -#else - if (cause && cause != Py_None) { -#endif - PyObject *fixed_cause; - if (cause == Py_None) { - fixed_cause = NULL; - } else if (PyExceptionClass_Check(cause)) { - fixed_cause = PyObject_CallObject(cause, NULL); - if (fixed_cause == NULL) - goto bad; - } else if (PyExceptionInstance_Check(cause)) { - fixed_cause = cause; - Py_INCREF(fixed_cause); - } else { - PyErr_SetString(PyExc_TypeError, - "exception causes must derive from " - "BaseException"); - goto bad; - } - PyException_SetCause(value, fixed_cause); - } - PyErr_SetObject(type, value); - if (tb) { -#if CYTHON_COMPILING_IN_PYPY - PyObject *tmp_type, *tmp_value, *tmp_tb; - PyErr_Fetch(tmp_type, tmp_value, tmp_tb); - Py_INCREF(tb); - PyErr_Restore(tmp_type, tmp_value, tb); - Py_XDECREF(tmp_tb); -#else - PyThreadState *tstate = PyThreadState_GET(); - PyObject* tmp_tb = tstate->curexc_traceback; - if (tb != tmp_tb) { - Py_INCREF(tb); - tstate->curexc_traceback = tb; - Py_XDECREF(tmp_tb); - } -#endif - } -bad: - Py_XDECREF(owned_instance); - return; -} -#endif - -static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { - int start = 0, mid = 0, end = count - 1; - if (end >= 0 && code_line > entries[end].code_line) { - return count; - } - while (start < end) { - mid = (start + end) / 2; - if (code_line < entries[mid].code_line) { - end = mid; - } else if (code_line > entries[mid].code_line) { - start = mid + 1; - } else { - return mid; - } - } - if (code_line <= entries[mid].code_line) { - return mid; - } else { - return mid + 1; - } -} -static PyCodeObject *__pyx_find_code_object(int code_line) { - PyCodeObject* code_object; - int pos; - if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) { - return NULL; - } - pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); - if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) { - return NULL; - } - code_object = __pyx_code_cache.entries[pos].code_object; - Py_INCREF(code_object); - return code_object; -} -static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { - int pos, i; - __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries; - if (unlikely(!code_line)) { - return; - } - if (unlikely(!entries)) { - entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry)); - if (likely(entries)) { - __pyx_code_cache.entries = entries; - __pyx_code_cache.max_count = 64; - __pyx_code_cache.count = 1; - entries[0].code_line = code_line; - entries[0].code_object = code_object; - Py_INCREF(code_object); - } - return; - } - pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); - if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) { - PyCodeObject* tmp = entries[pos].code_object; - entries[pos].code_object = code_object; - Py_DECREF(tmp); - return; - } - if (__pyx_code_cache.count == __pyx_code_cache.max_count) { - int new_max = __pyx_code_cache.max_count + 64; - entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc( - __pyx_code_cache.entries, (size_t)new_max*sizeof(__Pyx_CodeObjectCacheEntry)); - if (unlikely(!entries)) { - return; - } - __pyx_code_cache.entries = entries; - __pyx_code_cache.max_count = new_max; - } - for (i=__pyx_code_cache.count; i>pos; i--) { - entries[i] = entries[i-1]; - } - entries[pos].code_line = code_line; - entries[pos].code_object = code_object; - __pyx_code_cache.count++; - Py_INCREF(code_object); -} - -#include "compile.h" -#include "frameobject.h" -#include "traceback.h" -static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( - const char *funcname, int c_line, - int py_line, const char *filename) { - PyCodeObject *py_code = 0; - PyObject *py_srcfile = 0; - PyObject *py_funcname = 0; - #if PY_MAJOR_VERSION < 3 - py_srcfile = PyString_FromString(filename); - #else - py_srcfile = PyUnicode_FromString(filename); - #endif - if (!py_srcfile) goto bad; - if (c_line) { - #if PY_MAJOR_VERSION < 3 - py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); - #else - py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); - #endif - } - else { - #if PY_MAJOR_VERSION < 3 - py_funcname = PyString_FromString(funcname); - #else - py_funcname = PyUnicode_FromString(funcname); - #endif - } - if (!py_funcname) goto bad; - py_code = __Pyx_PyCode_New( - 0, - 0, - 0, - 0, - 0, - __pyx_empty_bytes, /*PyObject *code,*/ - __pyx_empty_tuple, /*PyObject *consts,*/ - __pyx_empty_tuple, /*PyObject *names,*/ - __pyx_empty_tuple, /*PyObject *varnames,*/ - __pyx_empty_tuple, /*PyObject *freevars,*/ - __pyx_empty_tuple, /*PyObject *cellvars,*/ - py_srcfile, /*PyObject *filename,*/ - py_funcname, /*PyObject *name,*/ - py_line, - __pyx_empty_bytes /*PyObject *lnotab*/ - ); - Py_DECREF(py_srcfile); - Py_DECREF(py_funcname); - return py_code; -bad: - Py_XDECREF(py_srcfile); - Py_XDECREF(py_funcname); - return NULL; -} -static void __Pyx_AddTraceback(const char *funcname, int c_line, - int py_line, const char *filename) { - PyCodeObject *py_code = 0; - PyFrameObject *py_frame = 0; - py_code = __pyx_find_code_object(c_line ? c_line : py_line); - if (!py_code) { - py_code = __Pyx_CreateCodeObjectForTraceback( - funcname, c_line, py_line, filename); - if (!py_code) goto bad; - __pyx_insert_code_object(c_line ? c_line : py_line, py_code); - } - py_frame = PyFrame_New( - PyThreadState_GET(), /*PyThreadState *tstate,*/ - py_code, /*PyCodeObject *code,*/ - __pyx_d, /*PyObject *globals,*/ - 0 /*PyObject *locals*/ - ); - if (!py_frame) goto bad; - py_frame->f_lineno = py_line; - PyTraceBack_Here(py_frame); -bad: - Py_XDECREF(py_code); - Py_XDECREF(py_frame); -} - -#if PY_MAJOR_VERSION < 3 -static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags) { - if (PyObject_CheckBuffer(obj)) return PyObject_GetBuffer(obj, view, flags); - if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) return __pyx_pw_5numpy_7ndarray_1__getbuffer__(obj, view, flags); - PyErr_Format(PyExc_TypeError, "'%.200s' does not have the buffer interface", Py_TYPE(obj)->tp_name); - return -1; -} -static void __Pyx_ReleaseBuffer(Py_buffer *view) { - PyObject *obj = view->obj; - if (!obj) return; - if (PyObject_CheckBuffer(obj)) { - PyBuffer_Release(view); - return; - } - if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) { __pyx_pw_5numpy_7ndarray_3__releasebuffer__(obj, view); return; } - Py_DECREF(obj); - view->obj = NULL; -} -#endif - - - static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { - PyObject *empty_list = 0; - PyObject *module = 0; - PyObject *global_dict = 0; - PyObject *empty_dict = 0; - PyObject *list; - #if PY_VERSION_HEX < 0x03030000 - PyObject *py_import; - py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); - if (!py_import) - goto bad; - #endif - if (from_list) - list = from_list; - else { - empty_list = PyList_New(0); - if (!empty_list) - goto bad; - list = empty_list; - } - global_dict = PyModule_GetDict(__pyx_m); - if (!global_dict) - goto bad; - empty_dict = PyDict_New(); - if (!empty_dict) - goto bad; - { - #if PY_MAJOR_VERSION >= 3 - if (level == -1) { - if (strchr(__Pyx_MODULE_NAME, '.')) { - #if PY_VERSION_HEX < 0x03030000 - PyObject *py_level = PyInt_FromLong(1); - if (!py_level) - goto bad; - module = PyObject_CallFunctionObjArgs(py_import, - name, global_dict, empty_dict, list, py_level, NULL); - Py_DECREF(py_level); - #else - module = PyImport_ImportModuleLevelObject( - name, global_dict, empty_dict, list, 1); - #endif - if (!module) { - if (!PyErr_ExceptionMatches(PyExc_ImportError)) - goto bad; - PyErr_Clear(); - } - } - level = 0; - } - #endif - if (!module) { - #if PY_VERSION_HEX < 0x03030000 - PyObject *py_level = PyInt_FromLong(level); - if (!py_level) - goto bad; - module = PyObject_CallFunctionObjArgs(py_import, - name, global_dict, empty_dict, list, py_level, NULL); - Py_DECREF(py_level); - #else - module = PyImport_ImportModuleLevelObject( - name, global_dict, empty_dict, list, level); - #endif - } - } -bad: - #if PY_VERSION_HEX < 0x03030000 - Py_XDECREF(py_import); - #endif - Py_XDECREF(empty_list); - Py_XDECREF(empty_dict); - return module; -} - -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { - const int neg_one = (int) -1, const_zero = 0; - const int is_unsigned = neg_one > const_zero; - if (is_unsigned) { - if (sizeof(int) < sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(int) <= sizeof(unsigned long)) { - return PyLong_FromUnsignedLong((unsigned long) value); - } else if (sizeof(int) <= sizeof(unsigned long long)) { - return PyLong_FromUnsignedLongLong((unsigned long long) value); - } - } else { - if (sizeof(int) <= sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(int) <= sizeof(long long)) { - return PyLong_FromLongLong((long long) value); - } - } - { - int one = 1; int little = (int)*(unsigned char *)&one; - unsigned char *bytes = (unsigned char *)&value; - return _PyLong_FromByteArray(bytes, sizeof(int), - little, !is_unsigned); - } -} - -#define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value) \ - { \ - func_type value = func_value; \ - if (sizeof(target_type) < sizeof(func_type)) { \ - if (unlikely(value != (func_type) (target_type) value)) { \ - func_type zero = 0; \ - if (is_unsigned && unlikely(value < zero)) \ - goto raise_neg_overflow; \ - else \ - goto raise_overflow; \ - } \ - } \ - return (target_type) value; \ - } - -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - #include "longintrepr.h" - #endif -#endif - -static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { - const int neg_one = (int) -1, const_zero = 0; - const int is_unsigned = neg_one > const_zero; -#if PY_MAJOR_VERSION < 3 - if (likely(PyInt_Check(x))) { - if (sizeof(int) < sizeof(long)) { - __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x)) - } else { - long val = PyInt_AS_LONG(x); - if (is_unsigned && unlikely(val < 0)) { - goto raise_neg_overflow; - } - return (int) val; - } - } else -#endif - if (likely(PyLong_Check(x))) { - if (is_unsigned) { -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - switch (Py_SIZE(x)) { - case 0: return 0; - case 1: __PYX_VERIFY_RETURN_INT(int, digit, ((PyLongObject*)x)->ob_digit[0]); - } - #endif -#endif - if (unlikely(Py_SIZE(x) < 0)) { - goto raise_neg_overflow; - } - if (sizeof(int) <= sizeof(unsigned long)) { - __PYX_VERIFY_RETURN_INT(int, unsigned long, PyLong_AsUnsignedLong(x)) - } else if (sizeof(int) <= sizeof(unsigned long long)) { - __PYX_VERIFY_RETURN_INT(int, unsigned long long, PyLong_AsUnsignedLongLong(x)) - } - } else { -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - switch (Py_SIZE(x)) { - case 0: return 0; - case 1: __PYX_VERIFY_RETURN_INT(int, digit, +(((PyLongObject*)x)->ob_digit[0])); - case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, -(sdigit) ((PyLongObject*)x)->ob_digit[0]); - } - #endif -#endif - if (sizeof(int) <= sizeof(long)) { - __PYX_VERIFY_RETURN_INT(int, long, PyLong_AsLong(x)) - } else if (sizeof(int) <= sizeof(long long)) { - __PYX_VERIFY_RETURN_INT(int, long long, PyLong_AsLongLong(x)) - } - } - { -#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) - PyErr_SetString(PyExc_RuntimeError, - "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); -#else - int val; - PyObject *v = __Pyx_PyNumber_Int(x); - #if PY_MAJOR_VERSION < 3 - if (likely(v) && !PyLong_Check(v)) { - PyObject *tmp = v; - v = PyNumber_Long(tmp); - Py_DECREF(tmp); - } - #endif - if (likely(v)) { - int one = 1; int is_little = (int)*(unsigned char *)&one; - unsigned char *bytes = (unsigned char *)&val; - int ret = _PyLong_AsByteArray((PyLongObject *)v, - bytes, sizeof(val), - is_little, !is_unsigned); - Py_DECREF(v); - if (likely(!ret)) - return val; - } -#endif - return (int) -1; - } - } else { - int val; - PyObject *tmp = __Pyx_PyNumber_Int(x); - if (!tmp) return (int) -1; - val = __Pyx_PyInt_As_int(tmp); - Py_DECREF(tmp); - return val; - } -raise_overflow: - PyErr_SetString(PyExc_OverflowError, - "value too large to convert to int"); - return (int) -1; -raise_neg_overflow: - PyErr_SetString(PyExc_OverflowError, - "can't convert negative value to int"); - return (int) -1; -} - -#if CYTHON_CCOMPLEX - #ifdef __cplusplus - static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { - return ::std::complex< float >(x, y); - } - #else - static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { - return x + y*(__pyx_t_float_complex)_Complex_I; - } - #endif -#else - static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { - __pyx_t_float_complex z; - z.real = x; - z.imag = y; - return z; - } -#endif - -#if CYTHON_CCOMPLEX -#else - static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex a, __pyx_t_float_complex b) { - return (a.real == b.real) && (a.imag == b.imag); - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex a, __pyx_t_float_complex b) { - __pyx_t_float_complex z; - z.real = a.real + b.real; - z.imag = a.imag + b.imag; - return z; - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex a, __pyx_t_float_complex b) { - __pyx_t_float_complex z; - z.real = a.real - b.real; - z.imag = a.imag - b.imag; - return z; - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex a, __pyx_t_float_complex b) { - __pyx_t_float_complex z; - z.real = a.real * b.real - a.imag * b.imag; - z.imag = a.real * b.imag + a.imag * b.real; - return z; - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex a, __pyx_t_float_complex b) { - __pyx_t_float_complex z; - float denom = b.real * b.real + b.imag * b.imag; - z.real = (a.real * b.real + a.imag * b.imag) / denom; - z.imag = (a.imag * b.real - a.real * b.imag) / denom; - return z; - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex a) { - __pyx_t_float_complex z; - z.real = -a.real; - z.imag = -a.imag; - return z; - } - static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex a) { - return (a.real == 0) && (a.imag == 0); - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex a) { - __pyx_t_float_complex z; - z.real = a.real; - z.imag = -a.imag; - return z; - } - #if 1 - static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex z) { - #if !defined(HAVE_HYPOT) || defined(_MSC_VER) - return sqrtf(z.real*z.real + z.imag*z.imag); - #else - return hypotf(z.real, z.imag); - #endif - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex a, __pyx_t_float_complex b) { - __pyx_t_float_complex z; - float r, lnr, theta, z_r, z_theta; - if (b.imag == 0 && b.real == (int)b.real) { - if (b.real < 0) { - float denom = a.real * a.real + a.imag * a.imag; - a.real = a.real / denom; - a.imag = -a.imag / denom; - b.real = -b.real; - } - switch ((int)b.real) { - case 0: - z.real = 1; - z.imag = 0; - return z; - case 1: - return a; - case 2: - z = __Pyx_c_prodf(a, a); - return __Pyx_c_prodf(a, a); - case 3: - z = __Pyx_c_prodf(a, a); - return __Pyx_c_prodf(z, a); - case 4: - z = __Pyx_c_prodf(a, a); - return __Pyx_c_prodf(z, z); - } - } - if (a.imag == 0) { - if (a.real == 0) { - return a; - } - r = a.real; - theta = 0; - } else { - r = __Pyx_c_absf(a); - theta = atan2f(a.imag, a.real); - } - lnr = logf(r); - z_r = expf(lnr * b.real - theta * b.imag); - z_theta = theta * b.real + lnr * b.imag; - z.real = z_r * cosf(z_theta); - z.imag = z_r * sinf(z_theta); - return z; - } - #endif -#endif - -#if CYTHON_CCOMPLEX - #ifdef __cplusplus - static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { - return ::std::complex< double >(x, y); - } - #else - static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { - return x + y*(__pyx_t_double_complex)_Complex_I; - } - #endif -#else - static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { - __pyx_t_double_complex z; - z.real = x; - z.imag = y; - return z; - } -#endif - -#if CYTHON_CCOMPLEX -#else - static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex a, __pyx_t_double_complex b) { - return (a.real == b.real) && (a.imag == b.imag); - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - z.real = a.real + b.real; - z.imag = a.imag + b.imag; - return z; - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - z.real = a.real - b.real; - z.imag = a.imag - b.imag; - return z; - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - z.real = a.real * b.real - a.imag * b.imag; - z.imag = a.real * b.imag + a.imag * b.real; - return z; - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - double denom = b.real * b.real + b.imag * b.imag; - z.real = (a.real * b.real + a.imag * b.imag) / denom; - z.imag = (a.imag * b.real - a.real * b.imag) / denom; - return z; - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex a) { - __pyx_t_double_complex z; - z.real = -a.real; - z.imag = -a.imag; - return z; - } - static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex a) { - return (a.real == 0) && (a.imag == 0); - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex a) { - __pyx_t_double_complex z; - z.real = a.real; - z.imag = -a.imag; - return z; - } - #if 1 - static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex z) { - #if !defined(HAVE_HYPOT) || defined(_MSC_VER) - return sqrt(z.real*z.real + z.imag*z.imag); - #else - return hypot(z.real, z.imag); - #endif - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - double r, lnr, theta, z_r, z_theta; - if (b.imag == 0 && b.real == (int)b.real) { - if (b.real < 0) { - double denom = a.real * a.real + a.imag * a.imag; - a.real = a.real / denom; - a.imag = -a.imag / denom; - b.real = -b.real; - } - switch ((int)b.real) { - case 0: - z.real = 1; - z.imag = 0; - return z; - case 1: - return a; - case 2: - z = __Pyx_c_prod(a, a); - return __Pyx_c_prod(a, a); - case 3: - z = __Pyx_c_prod(a, a); - return __Pyx_c_prod(z, a); - case 4: - z = __Pyx_c_prod(a, a); - return __Pyx_c_prod(z, z); - } - } - if (a.imag == 0) { - if (a.real == 0) { - return a; - } - r = a.real; - theta = 0; - } else { - r = __Pyx_c_abs(a); - theta = atan2(a.imag, a.real); - } - lnr = log(r); - z_r = exp(lnr * b.real - theta * b.imag); - z_theta = theta * b.real + lnr * b.imag; - z.real = z_r * cos(z_theta); - z.imag = z_r * sin(z_theta); - return z; - } - #endif -#endif - -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { - const long neg_one = (long) -1, const_zero = 0; - const int is_unsigned = neg_one > const_zero; - if (is_unsigned) { - if (sizeof(long) < sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(long) <= sizeof(unsigned long)) { - return PyLong_FromUnsignedLong((unsigned long) value); - } else if (sizeof(long) <= sizeof(unsigned long long)) { - return PyLong_FromUnsignedLongLong((unsigned long long) value); - } - } else { - if (sizeof(long) <= sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(long) <= sizeof(long long)) { - return PyLong_FromLongLong((long long) value); - } - } - { - int one = 1; int little = (int)*(unsigned char *)&one; - unsigned char *bytes = (unsigned char *)&value; - return _PyLong_FromByteArray(bytes, sizeof(long), - little, !is_unsigned); - } -} - -static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { - const long neg_one = (long) -1, const_zero = 0; - const int is_unsigned = neg_one > const_zero; -#if PY_MAJOR_VERSION < 3 - if (likely(PyInt_Check(x))) { - if (sizeof(long) < sizeof(long)) { - __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x)) - } else { - long val = PyInt_AS_LONG(x); - if (is_unsigned && unlikely(val < 0)) { - goto raise_neg_overflow; - } - return (long) val; - } - } else -#endif - if (likely(PyLong_Check(x))) { - if (is_unsigned) { -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - switch (Py_SIZE(x)) { - case 0: return 0; - case 1: __PYX_VERIFY_RETURN_INT(long, digit, ((PyLongObject*)x)->ob_digit[0]); - } - #endif -#endif - if (unlikely(Py_SIZE(x) < 0)) { - goto raise_neg_overflow; - } - if (sizeof(long) <= sizeof(unsigned long)) { - __PYX_VERIFY_RETURN_INT(long, unsigned long, PyLong_AsUnsignedLong(x)) - } else if (sizeof(long) <= sizeof(unsigned long long)) { - __PYX_VERIFY_RETURN_INT(long, unsigned long long, PyLong_AsUnsignedLongLong(x)) - } - } else { -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - switch (Py_SIZE(x)) { - case 0: return 0; - case 1: __PYX_VERIFY_RETURN_INT(long, digit, +(((PyLongObject*)x)->ob_digit[0])); - case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, -(sdigit) ((PyLongObject*)x)->ob_digit[0]); - } - #endif -#endif - if (sizeof(long) <= sizeof(long)) { - __PYX_VERIFY_RETURN_INT(long, long, PyLong_AsLong(x)) - } else if (sizeof(long) <= sizeof(long long)) { - __PYX_VERIFY_RETURN_INT(long, long long, PyLong_AsLongLong(x)) - } - } - { -#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) - PyErr_SetString(PyExc_RuntimeError, - "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); -#else - long val; - PyObject *v = __Pyx_PyNumber_Int(x); - #if PY_MAJOR_VERSION < 3 - if (likely(v) && !PyLong_Check(v)) { - PyObject *tmp = v; - v = PyNumber_Long(tmp); - Py_DECREF(tmp); - } - #endif - if (likely(v)) { - int one = 1; int is_little = (int)*(unsigned char *)&one; - unsigned char *bytes = (unsigned char *)&val; - int ret = _PyLong_AsByteArray((PyLongObject *)v, - bytes, sizeof(val), - is_little, !is_unsigned); - Py_DECREF(v); - if (likely(!ret)) - return val; - } -#endif - return (long) -1; - } - } else { - long val; - PyObject *tmp = __Pyx_PyNumber_Int(x); - if (!tmp) return (long) -1; - val = __Pyx_PyInt_As_long(tmp); - Py_DECREF(tmp); - return val; - } -raise_overflow: - PyErr_SetString(PyExc_OverflowError, - "value too large to convert to long"); - return (long) -1; -raise_neg_overflow: - PyErr_SetString(PyExc_OverflowError, - "can't convert negative value to long"); - return (long) -1; -} - -static int __Pyx_check_binary_version(void) { - char ctversion[4], rtversion[4]; - PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); - PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); - if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) { - char message[200]; - PyOS_snprintf(message, sizeof(message), - "compiletime version %s of module '%.100s' " - "does not match runtime version %s", - ctversion, __Pyx_MODULE_NAME, rtversion); - return PyErr_WarnEx(NULL, message, 1); - } - return 0; -} - -#ifndef __PYX_HAVE_RT_ImportModule -#define __PYX_HAVE_RT_ImportModule -static PyObject *__Pyx_ImportModule(const char *name) { - PyObject *py_name = 0; - PyObject *py_module = 0; - py_name = __Pyx_PyIdentifier_FromString(name); - if (!py_name) - goto bad; - py_module = PyImport_Import(py_name); - Py_DECREF(py_name); - return py_module; -bad: - Py_XDECREF(py_name); - return 0; -} -#endif - -#ifndef __PYX_HAVE_RT_ImportType -#define __PYX_HAVE_RT_ImportType -static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, - size_t size, int strict) -{ - PyObject *py_module = 0; - PyObject *result = 0; - PyObject *py_name = 0; - char warning[200]; - Py_ssize_t basicsize; -#ifdef Py_LIMITED_API - PyObject *py_basicsize; -#endif - py_module = __Pyx_ImportModule(module_name); - if (!py_module) - goto bad; - py_name = __Pyx_PyIdentifier_FromString(class_name); - if (!py_name) - goto bad; - result = PyObject_GetAttr(py_module, py_name); - Py_DECREF(py_name); - py_name = 0; - Py_DECREF(py_module); - py_module = 0; - if (!result) - goto bad; - if (!PyType_Check(result)) { - PyErr_Format(PyExc_TypeError, - "%.200s.%.200s is not a type object", - module_name, class_name); - goto bad; - } -#ifndef Py_LIMITED_API - basicsize = ((PyTypeObject *)result)->tp_basicsize; -#else - py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); - if (!py_basicsize) - goto bad; - basicsize = PyLong_AsSsize_t(py_basicsize); - Py_DECREF(py_basicsize); - py_basicsize = 0; - if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) - goto bad; -#endif - if (!strict && (size_t)basicsize > size) { - PyOS_snprintf(warning, sizeof(warning), - "%s.%s size changed, may indicate binary incompatibility", - module_name, class_name); - if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad; - } - else if ((size_t)basicsize != size) { - PyErr_Format(PyExc_ValueError, - "%.200s.%.200s has the wrong size, try recompiling", - module_name, class_name); - goto bad; - } - return (PyTypeObject *)result; -bad: - Py_XDECREF(py_module); - Py_XDECREF(result); - return NULL; -} -#endif - -static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { - while (t->p) { - #if PY_MAJOR_VERSION < 3 - if (t->is_unicode) { - *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL); - } else if (t->intern) { - *t->p = PyString_InternFromString(t->s); - } else { - *t->p = PyString_FromStringAndSize(t->s, t->n - 1); - } - #else - if (t->is_unicode | t->is_str) { - if (t->intern) { - *t->p = PyUnicode_InternFromString(t->s); - } else if (t->encoding) { - *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL); - } else { - *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1); - } - } else { - *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1); - } - #endif - if (!*t->p) - return -1; - ++t; - } - return 0; -} - -static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { - return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str)); -} -static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) { - Py_ssize_t ignore; - return __Pyx_PyObject_AsStringAndSize(o, &ignore); -} -static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { -#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT - if ( -#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII - __Pyx_sys_getdefaultencoding_not_ascii && -#endif - PyUnicode_Check(o)) { -#if PY_VERSION_HEX < 0x03030000 - char* defenc_c; - PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL); - if (!defenc) return NULL; - defenc_c = PyBytes_AS_STRING(defenc); -#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII - { - char* end = defenc_c + PyBytes_GET_SIZE(defenc); - char* c; - for (c = defenc_c; c < end; c++) { - if ((unsigned char) (*c) >= 128) { - PyUnicode_AsASCIIString(o); - return NULL; - } - } - } -#endif - *length = PyBytes_GET_SIZE(defenc); - return defenc_c; -#else - if (__Pyx_PyUnicode_READY(o) == -1) return NULL; -#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII - if (PyUnicode_IS_ASCII(o)) { - *length = PyUnicode_GET_LENGTH(o); - return PyUnicode_AsUTF8(o); - } else { - PyUnicode_AsASCIIString(o); - return NULL; - } -#else - return PyUnicode_AsUTF8AndSize(o, length); -#endif -#endif - } else -#endif -#if !CYTHON_COMPILING_IN_PYPY - if (PyByteArray_Check(o)) { - *length = PyByteArray_GET_SIZE(o); - return PyByteArray_AS_STRING(o); - } else -#endif - { - char* result; - int r = PyBytes_AsStringAndSize(o, &result, length); - if (unlikely(r < 0)) { - return NULL; - } else { - return result; - } - } -} -static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { - int is_true = x == Py_True; - if (is_true | (x == Py_False) | (x == Py_None)) return is_true; - else return PyObject_IsTrue(x); -} -static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x) { - PyNumberMethods *m; - const char *name = NULL; - PyObject *res = NULL; -#if PY_MAJOR_VERSION < 3 - if (PyInt_Check(x) || PyLong_Check(x)) -#else - if (PyLong_Check(x)) -#endif - return Py_INCREF(x), x; - m = Py_TYPE(x)->tp_as_number; -#if PY_MAJOR_VERSION < 3 - if (m && m->nb_int) { - name = "int"; - res = PyNumber_Int(x); - } - else if (m && m->nb_long) { - name = "long"; - res = PyNumber_Long(x); - } -#else - if (m && m->nb_int) { - name = "int"; - res = PyNumber_Long(x); - } -#endif - if (res) { -#if PY_MAJOR_VERSION < 3 - if (!PyInt_Check(res) && !PyLong_Check(res)) { -#else - if (!PyLong_Check(res)) { -#endif - PyErr_Format(PyExc_TypeError, - "__%.4s__ returned non-%.4s (type %.200s)", - name, name, Py_TYPE(res)->tp_name); - Py_DECREF(res); - return NULL; - } - } - else if (!PyErr_Occurred()) { - PyErr_SetString(PyExc_TypeError, - "an integer is required"); - } - return res; -} -static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { - Py_ssize_t ival; - PyObject *x; -#if PY_MAJOR_VERSION < 3 - if (likely(PyInt_CheckExact(b))) - return PyInt_AS_LONG(b); -#endif - if (likely(PyLong_CheckExact(b))) { - #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - switch (Py_SIZE(b)) { - case -1: return -(sdigit)((PyLongObject*)b)->ob_digit[0]; - case 0: return 0; - case 1: return ((PyLongObject*)b)->ob_digit[0]; - } - #endif - #endif - return PyLong_AsSsize_t(b); - } - x = PyNumber_Index(b); - if (!x) return -1; - ival = PyInt_AsSsize_t(x); - Py_DECREF(x); - return ival; -} -static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { - return PyInt_FromSize_t(ival); -} - - -#endif /* Py_PYTHON_H */ |