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2015-07-01Got predict-victims running in parallel, drastically reducing the timeBen Green
for each test. Also changed how we get the rankings of infected individuals each day.
2015-06-28Worked on synthetic data recovery so we can tell how high the actualBen Green
infector is ranked among all potential parents. Cleaned up code for the predicting victims benchmarking test.
2015-06-25Worked on process to generate cascades in R, recover them in ml2, andBen Green
compare true/recovered. Results look good: ml2 finds close-to-actual parameters and gets ~60% of the infectors right. I will check how many recovery gets in the top 2 or 3 infectors.
2015-06-25Tried ml3 that allows for multiple parents to infect.Ben Green
2015-06-25playing around with ml3Ben Green
2015-06-23ran some experiments with ml3, still no good resultsBen Green
2015-06-23updated calculation of structural component with edge weights, and toBen Green
penalize less for longer distances
2015-06-22Added ml3, where we don’t consider edges from victims to non-victims.Ben Green
Also playing around with only allowing most likely parent to try and infect. Still working to see if some variant produces good results that allow us to determine seeds/non-seeds.
2015-06-20altered weight_success to show dist and dt between each parent and childBen Green
2015-06-20More tests with ml2 to find optimal resultsBen Green
2015-06-20added new model, ml2, which assumes all victims are infected by someoneBen Green
else (unless they are root victims)
2015-06-20tried generating cascades and recovering parameters, still got the sameBen Green
result where optimization minimizes alpha, delta as much as possible
2015-06-19Continuing to experiment. Identifying infections vs seeds might beBen Green
impossible :/. We may want to try a model where we just assume infections — can get parameters for the benchmark test.
2015-06-18testing new model, realizing we may be getting optimal beta wrongBen Green
2015-06-18altered spawning model and changed temporal probability onBen Green
weight_success
2015-06-16Changed model for spawning. Began fixing underflow error inBen Green
prob_success/failure
2015-06-15minor changes for testingBen Green
2015-06-11started adding weights into edge probabilitiesBen Green
2015-06-11cleaned up code with some minor changesBen Green
2015-06-08Ben’s first commit after getting code working!Ben Green
2015-06-07Project cleanup before handing it to BenThibaut Horel
2015-04-06Updated model, still getting weird results thoughThibaut Horel
2015-03-30New version of the modelThibaut Horel